ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16k03 |
|---|---|
| Clone Library Name | barley_pub |
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 32.0 bits (71), Expect = 1.9 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = -1 Query: 698 DCSCSVHTYSLCLPLHDVPVRTWIIDRTEYCISNKK*SWCYH 573 DC S HTY L PL VP W + ++C+ WC H Sbjct: 1027 DCDISYHTYCLDPPLQTVPKGGW---KCKWCV------WCRH 1059
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 32.0 bits (71), Expect = 1.9 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = -1 Query: 698 DCSCSVHTYSLCLPLHDVPVRTWIIDRTEYCISNKK*SWCYH 573 DC S HTY L PL VP W + ++C+ WC H Sbjct: 1020 DCDISYHTYCLDPPLQTVPKGGW---KCKWCV------WCRH 1052
>VACHT_BRARE (P59845) Probable vesicular acetylcholine transporter (VAChT)| Length = 493 Score = 31.6 bits (70), Expect = 2.5 Identities = 23/81 (28%), Positives = 36/81 (44%) Frame = -2 Query: 667 FAYPYMTYLSGPGLSIVLNIASVIKNNLGVTIITGTFILQNNAVPQNQRGAANGLAMTGM 488 FA Y T + L + S + G+ +I F + +R A G+A+ + Sbjct: 132 FAENYGTLFAARSLQ---GLGSAFADTSGIAMIADKF------TEEAERSRALGIALAFI 182 Query: 487 SFFKAVAPAGAGIVFSWAQKR 425 SF VAP GI++ +A KR Sbjct: 183 SFGSLVAPPFGGILYEFAGKR 203
>PPME1_BOVIN (Q58DN4) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)| Length = 379 Score = 31.6 bits (70), Expect = 2.5 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = +2 Query: 329 QEGSECEDKSKELDDVQQKEHHLVTWKEE 415 +EGSE +K K+ DD++ K+ H TW+ E Sbjct: 261 EEGSESVNKRKKEDDMETKKDHPYTWRIE 289
>PPME1_MOUSE (Q8BVQ5) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)| Length = 385 Score = 31.6 bits (70), Expect = 2.5 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = +2 Query: 329 QEGSECEDKSKELDDVQQKEHHLVTWKEE 415 +EGSE +K K+ DD++ K+ H TW+ E Sbjct: 261 EEGSESVNKRKKEDDMETKKDHPYTWRIE 289
>PPME1_PONPY (Q5R4F9) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)| Length = 385 Score = 30.8 bits (68), Expect = 4.2 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +2 Query: 329 QEGSECEDKSKELDDVQQKEHHLVTWKEE 415 +EGSE K K+ DD++ K+ H TW+ E Sbjct: 261 EEGSESISKRKKEDDMETKKDHPYTWRIE 289
>PPME1_HUMAN (Q9Y570) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)| Length = 385 Score = 30.8 bits (68), Expect = 4.2 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +2 Query: 329 QEGSECEDKSKELDDVQQKEHHLVTWKEE 415 +EGSE K K+ DD++ K+ H TW+ E Sbjct: 261 EEGSESISKRKKEDDMETKKDHPYTWRIE 289
>VACHT_TOROC (Q91514) Vesicular acetylcholine transporter (VAChT)| (Vesamicol-binding protein) Length = 511 Score = 30.4 bits (67), Expect = 5.5 Identities = 20/90 (22%), Positives = 44/90 (48%) Frame = -2 Query: 697 IAAVLCIPILFAYPYMTYLSGPGLSIVLNIASVIKNNLGVTIITGTFILQNNAVPQNQRG 518 I ++ + I+F + +T+ G +I+ S+ +G ++ + +++R Sbjct: 136 IPLLIGLTIMF-FSTITFAFGESYAILFAARSLQGLGSAFADTSGIAMIADKYTEESERT 194 Query: 517 AANGLAMTGMSFFKAVAPAGAGIVFSWAQK 428 A G+A+ +SF VAP G+++ +A K Sbjct: 195 QALGIALAFISFGSLVAPPFGGVLYQFAGK 224
>VACHT_TORMA (Q91498) Vesicular acetylcholine transporter (VAChT)| (Vesamicol-binding protein) Length = 511 Score = 30.4 bits (67), Expect = 5.5 Identities = 20/90 (22%), Positives = 44/90 (48%) Frame = -2 Query: 697 IAAVLCIPILFAYPYMTYLSGPGLSIVLNIASVIKNNLGVTIITGTFILQNNAVPQNQRG 518 I ++ + I+F + +T+ G +I+ S+ +G ++ + +++R Sbjct: 136 IPLLIGLTIMF-FSTITFAFGESYAILFAARSLQGLGSAFADTSGIAMIADKYTEESERT 194 Query: 517 AANGLAMTGMSFFKAVAPAGAGIVFSWAQK 428 A G+A+ +SF VAP G+++ +A K Sbjct: 195 QALGIALAFISFGSLVAPPFGGVLYQFAGK 224
>VACHT_TORCA (P81721) Vesicular acetylcholine transporter (VAChT) (TorVAChT)| Length = 515 Score = 30.0 bits (66), Expect = 7.2 Identities = 19/90 (21%), Positives = 44/90 (48%) Frame = -2 Query: 697 IAAVLCIPILFAYPYMTYLSGPGLSIVLNIASVIKNNLGVTIITGTFILQNNAVPQNQRG 518 I ++ + I+F + +T+ G +++ S+ +G ++ + +++R Sbjct: 140 IPLLIGLTIMF-FSTITFAFGESYAVLFAARSLQGLGSAFADTSGIAMIADKYTEESERT 198 Query: 517 AANGLAMTGMSFFKAVAPAGAGIVFSWAQK 428 A G+A+ +SF VAP G+++ +A K Sbjct: 199 QALGIALAFISFGSLVAPPFGGVLYQFAGK 228
>UNC17_CAEEL (P34711) Vesicular acetylcholine transporter unc-17 (Uncoordinated| protein 17) Length = 532 Score = 30.0 bits (66), Expect = 7.2 Identities = 15/47 (31%), Positives = 27/47 (57%) Frame = -2 Query: 568 TGTFILQNNAVPQNQRGAANGLAMTGMSFFKAVAPAGAGIVFSWAQK 428 +G ++ + +N+R AA G+A+ +SF VAP +++S A K Sbjct: 173 SGLAMIADRFTEENERSAALGIALAFISFGCLVAPPFGSVLYSLAGK 219
>PC_DROME (P26017) Polycomb group protein Pc (Protein polycomb)| Length = 390 Score = 27.7 bits (60), Expect(2) = 7.2 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = -1 Query: 578 YHHHRHFHPSKQCRAPEPKRSSKWISHD 495 +HHH H H SK+ R S+ +H+ Sbjct: 160 HHHHHHHHESKRQRIDHSSSSNSSFTHN 187 Score = 20.8 bits (42), Expect(2) = 7.2 Identities = 7/16 (43%), Positives = 9/16 (56%) Frame = -1 Query: 602 SNKK*SWCYHHHRHFH 555 S K+ +HHH H H Sbjct: 128 SKKEKKHHHHHHHHHH 143
>KDSA_SYNPX (Q7U9S3) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)| (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) Length = 283 Score = 29.6 bits (65), Expect = 9.4 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%) Frame = -2 Query: 700 QIAAVLCIPILFAYPY-------MTYLSGPGLSIVLNIASVIKNNLGVTIIT 566 Q+ L IP++F Y + GPGL L I +K+ LG+ +IT Sbjct: 43 QVCERLGIPLVFKASYDKANRSSIHSFRGPGLEAGLQILQAVKDTLGIPVIT 94
>YEEJ_ECOLI (P76347) Hypothetical protein yeeJ| Length = 2358 Score = 29.6 bits (65), Expect = 9.4 Identities = 9/35 (25%), Positives = 23/35 (65%), Gaps = 3/35 (8%) Frame = -3 Query: 147 VVAAPQNGGGAYIYML---XWYINGGQLSWLFAIS 52 + A P++GG +Y+Y + W++N G+ +++++ Sbjct: 2237 ITATPKSGGPSYVYEIRVKSWWVNAGEAFMIYSLA 2271 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,004,708 Number of Sequences: 219361 Number of extensions: 2348197 Number of successful extensions: 6711 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 6130 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6620 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7082949625 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
