>JHD3_CAEEL (Q9U297) JmjC domain-containing histone demethylation protein 3 (EC|
           1.14.11.-) (ceJMJD2)
          Length = 894

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 141 QLVGSQAGAM--CKVGFGSAWKHEGCCLFS 58
           QL   + GA+  C++G  S W H  C LF+
Sbjct: 643 QLCELRGGALIPCQIGTDSTWAHVACALFN 672


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,734,086
Number of Sequences: 219361
Number of extensions: 506580
Number of successful extensions: 838
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)