ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16k02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK065012.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
2ref|XM_471553.1| Oryza sativa (japonica cultivar-group), predic... 74 3e-10
3emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4,... 74 3e-10
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
5emb|AL158840.14| Human DNA sequence from clone RP11-181B18 on ch... 42 1.1
6emb|BX927153.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 4.5
7dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 4.5
8emb|CT010584.19| Mouse DNA sequence from clone RP23-383B20 on ch... 40 4.5

>dbj|AK065012.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F04, full
           insert sequence
          Length = 1109

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 101/120 (84%)
 Strand = Plus / Minus

                                                                       
Query: 212 tccatctnctttccggngctctcgtaatagtcgttcancgcccactggtatttgnattga 271
           ||||| | |||||||  |||||| || || ||||| |  ||||||||||| ||| |||||
Sbjct: 696 tccatatcctttccgttgctctcatagtactcgttgagagcccactggtacttggattga 637

                                                                       
Query: 272 tcgagcccgaaccaattcgaaatgtactnatccaagcttgngtgcgcttcttgcacgcgc 331
           || ||||||||||| ||||| |||||||  |||||||| | |||||||||||||||||||
Sbjct: 636 tccagcccgaaccagttcgagatgtactcgtccaagctggcgtgcgcttcttgcacgcgc 577



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>ref|XM_471553.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 546

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 83/100 (83%)
 Strand = Plus / Minus

                                                                       
Query: 220 ctttccggngctctcgtaatagtcgttcancgcccactggtatttgnattgatcgagccc 279
           |||||||  |||||| || || ||||| |  ||||||||||| ||| ||||||| |||||
Sbjct: 432 ctttccgttgctctcatagtactcgttgagagcccactggtacttggattgatccagccc 373

                                                   
Query: 280 gaaccaattcgaaatgtactnatccaagcttgngtgcgct 319
           |||||| ||||| |||||||  |||||||| | |||||||
Sbjct: 372 gaaccagttcgagatgtactcgtccaagctggcgtgcgct 333



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>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05,
             complete sequence
          Length = 185211

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 83/100 (83%)
 Strand = Plus / Plus

                                                                         
Query: 220   ctttccggngctctcgtaatagtcgttcancgcccactggtatttgnattgatcgagccc 279
             |||||||  |||||| || || ||||| |  ||||||||||| ||| ||||||| |||||
Sbjct: 93697 ctttccgttgctctcatagtactcgttgagagcccactggtacttggattgatccagccc 93756

                                                     
Query: 280   gaaccaattcgaaatgtactnatccaagcttgngtgcgct 319
             |||||| ||||| |||||||  |||||||| | |||||||
Sbjct: 93757 gaaccagttcgagatgtactcgtccaagctggcgtgcgct 93796



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 83/100 (83%)
 Strand = Plus / Plus

                                                                            
Query: 220      ctttccggngctctcgtaatagtcgttcancgcccactggtatttgnattgatcgagccc 279
                |||||||  |||||| || || ||||| |  ||||||||||| ||| ||||||| |||||
Sbjct: 12268816 ctttccgttgctctcatagtactcgttgagagcccactggtacttggattgatccagccc 12268875

                                                        
Query: 280      gaaccaattcgaaatgtactnatccaagcttgngtgcgct 319
                |||||| ||||| |||||||  |||||||| | |||||||
Sbjct: 12268876 gaaccagttcgagatgtactcgtccaagctggcgtgcgct 12268915



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>emb|AL158840.14| Human DNA sequence from clone RP11-181B18 on chromosome 1 Contains part
             of gene KIAA1365 and a novel gene, complete sequence
          Length = 87665

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 140   tgcataaatatatatcactac 160
             |||||||||||||||||||||
Sbjct: 72102 tgcataaatatatatcactac 72122



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>emb|BX927153.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 6/10
          Length = 349584

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    taccgacaagctgcataaat 148
              ||||||||||||||||||||
Sbjct: 208147 taccgacaagctgcataaat 208166



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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 129     taccgacaagctgcataaat 148
               ||||||||||||||||||||
Sbjct: 1952116 taccgacaagctgcataaat 1952135



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>emb|CT010584.19| Mouse DNA sequence from clone RP23-383B20 on chromosome 16, complete
             sequence
          Length = 199010

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    gttgtaggaaaagaggcaac 71
             ||||||||||||||||||||
Sbjct: 72221 gttgtaggaaaagaggcaac 72202


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,638,747
Number of Sequences: 3902068
Number of extensions: 1638747
Number of successful extensions: 22930
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22912
Number of HSP's gapped (non-prelim): 18
length of query: 343
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 321
effective length of database: 17,147,199,772
effective search space: 5504251126812
effective search space used: 5504251126812
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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