Clone Name | rbasd16j17 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197930.1| Oryza sativa (japonica cultivar-group) putative Clp protease (OSJNBa0056G17.6), mRNA Length = 897 Score = 624 bits (315), Expect = e-176 Identities = 516/583 (88%) Strand = Plus / Minus Query: 65 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 124 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 881 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 822 Query: 125 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 184 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 821 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 762 Query: 185 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 244 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 761 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 702 Query: 245 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 304 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 701 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 642 Query: 305 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 364 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 641 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 582 Query: 365 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 424 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 581 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 522 Query: 425 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 484 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 521 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 462 Query: 485 attccaatagtggatacatctgccctcaccagctgcattacatcgtagatagccattgtc 544 | |||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 461 aatccaatagtggaaacatctgccctcacgagctgcattacatcatagatggccattgtt 402 Query: 545 gcactgagtgatccaccgggggagttgacgaagagccggatgtcagattcggagtccatg 604 || ||||||||||| || ||||||||||||||||| ||||||||||| | || ||| | | Sbjct: 401 gcgctgagtgatcccccaggggagttgacgaagaggcggatgtcagagttggggtcgacg 342 Query: 605 gcgtcgaggaggaggagctggctgacgacggcgtcggcgagga 647 ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 341 gcgtcgaggaggaggagctggctgacgactgcgtcggcgagga 299
>dbj|AK104823.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F03, full insert sequence Length = 1125 Score = 624 bits (315), Expect = e-176 Identities = 516/583 (88%) Strand = Plus / Minus Query: 65 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 124 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 894 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 835 Query: 125 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 184 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 834 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 775 Query: 185 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 244 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 774 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 715 Query: 245 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 304 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 714 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 655 Query: 305 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 364 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 654 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 595 Query: 365 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 424 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 594 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 535 Query: 425 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 484 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 534 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 475 Query: 485 attccaatagtggatacatctgccctcaccagctgcattacatcgtagatagccattgtc 544 | |||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 474 aatccaatagtggaaacatctgccctcacgagctgcattacatcatagatggccattgtt 415 Query: 545 gcactgagtgatccaccgggggagttgacgaagagccggatgtcagattcggagtccatg 604 || ||||||||||| || ||||||||||||||||| ||||||||||| | || ||| | | Sbjct: 414 gcgctgagtgatcccccaggggagttgacgaagaggcggatgtcagagttggggtcgacg 355 Query: 605 gcgtcgaggaggaggagctggctgacgacggcgtcggcgagga 647 ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 354 gcgtcgaggaggaggagctggctgacgactgcgtcggcgagga 312
>dbj|AK104589.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H06, full insert sequence Length = 1045 Score = 624 bits (315), Expect = e-176 Identities = 516/583 (88%) Strand = Plus / Minus Query: 65 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 124 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 888 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 829 Query: 125 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 184 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 828 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 769 Query: 185 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 244 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 768 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 709 Query: 245 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 304 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 708 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 649 Query: 305 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 364 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 648 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 589 Query: 365 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 424 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 588 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 529 Query: 425 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 484 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 528 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 469 Query: 485 attccaatagtggatacatctgccctcaccagctgcattacatcgtagatagccattgtc 544 | |||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 468 aatccaatagtggaaacatctgccctcacgagctgcattacatcatagatggccattgtt 409 Query: 545 gcactgagtgatccaccgggggagttgacgaagagccggatgtcagattcggagtccatg 604 || ||||||||||| || ||||||||||||||||| ||||||||||| | || ||| | | Sbjct: 408 gcgctgagtgatcccccaggggagttgacgaagaggcggatgtcagagttggggtcgacg 349 Query: 605 gcgtcgaggaggaggagctggctgacgacggcgtcggcgagga 647 ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 348 gcgtcgaggaggaggagctggctgacgactgcgtcggcgagga 306
>dbj|AK104666.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A06, full insert sequence Length = 1069 Score = 624 bits (315), Expect = e-176 Identities = 516/583 (88%) Strand = Plus / Minus Query: 65 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 124 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 892 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 833 Query: 125 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 184 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 832 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 773 Query: 185 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 244 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 772 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 713 Query: 245 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 304 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 712 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 653 Query: 305 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 364 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 652 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 593 Query: 365 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 424 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 592 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 533 Query: 425 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 484 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 532 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 473 Query: 485 attccaatagtggatacatctgccctcaccagctgcattacatcgtagatagccattgtc 544 | |||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 472 aatccaatagtggaaacatctgccctcacgagctgcattacatcatagatggccattgtt 413 Query: 545 gcactgagtgatccaccgggggagttgacgaagagccggatgtcagattcggagtccatg 604 || ||||||||||| || ||||||||||||||||| ||||||||||| | || ||| | | Sbjct: 412 gcgctgagtgatcccccaggggagttgacgaagaggcggatgtcagagttggggtcgacg 353 Query: 605 gcgtcgaggaggaggagctggctgacgacggcgtcggcgagga 647 ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 352 gcgtcgaggaggaggagctggctgacgactgcgtcggcgagga 310
>dbj|AK104396.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C09, full insert sequence Length = 1106 Score = 624 bits (315), Expect = e-176 Identities = 516/583 (88%) Strand = Plus / Minus Query: 65 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 124 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 892 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 833 Query: 125 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 184 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 832 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 773 Query: 185 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 244 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 772 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 713 Query: 245 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 304 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 712 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 653 Query: 305 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 364 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 652 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 593 Query: 365 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 424 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 592 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 533 Query: 425 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 484 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 532 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 473 Query: 485 attccaatagtggatacatctgccctcaccagctgcattacatcgtagatagccattgtc 544 | |||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 472 aatccaatagtggaaacatctgccctcacgagctgcattacatcatagatggccattgtt 413 Query: 545 gcactgagtgatccaccgggggagttgacgaagagccggatgtcagattcggagtccatg 604 || ||||||||||| || ||||||||||||||||| ||||||||||| | || ||| | | Sbjct: 412 gcgctgagtgatcccccaggggagttgacgaagaggcggatgtcagagttggggtcgacg 353 Query: 605 gcgtcgaggaggaggagctggctgacgacggcgtcggcgagga 647 ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 352 gcgtcgaggaggaggagctggctgacgactgcgtcggcgagga 310
>dbj|AK065306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O07, full insert sequence Length = 1113 Score = 624 bits (315), Expect = e-176 Identities = 516/583 (88%) Strand = Plus / Minus Query: 65 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 124 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 895 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 836 Query: 125 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 184 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 835 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 776 Query: 185 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 244 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 775 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 716 Query: 245 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 304 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 715 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 656 Query: 305 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 364 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 655 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 596 Query: 365 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 424 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 595 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 536 Query: 425 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 484 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 535 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 476 Query: 485 attccaatagtggatacatctgccctcaccagctgcattacatcgtagatagccattgtc 544 | |||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 475 aatccaatagtggaaacatctgccctcacgagctgcattacatcatagatggccattgtt 416 Query: 545 gcactgagtgatccaccgggggagttgacgaagagccggatgtcagattcggagtccatg 604 || ||||||||||| || ||||||||||||||||| ||||||||||| | || ||| | | Sbjct: 415 gcgctgagtgatcccccaggggagttgacgaagaggcggatgtcagagttggggtcgacg 356 Query: 605 gcgtcgaggaggaggagctggctgacgacggcgtcggcgagga 647 ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 355 gcgtcgaggaggaggagctggctgacgactgcgtcggcgagga 313
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 507 bits (256), Expect = e-140 Identities = 430/488 (88%) Strand = Plus / Minus Query: 65 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 124 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 126257 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 126198 Query: 125 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 184 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 126197 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 126138 Query: 185 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 244 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 126137 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 126078 Query: 245 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 304 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 126077 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 126018 Query: 305 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 364 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 126017 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 125958 Query: 365 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 424 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 125957 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 125898 Query: 425 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 484 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 125897 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 125838 Query: 485 attccaatagtggatacatctgccctcaccagctgcattacatcgtagatagccattgtc 544 | |||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 125837 aatccaatagtggaaacatctgccctcacgagctgcattacatcatagatggccattgtt 125778 Query: 545 gcactgag 552 || ||||| Sbjct: 125777 gcgctgag 125770 Score = 127 bits (64), Expect = 5e-26 Identities = 91/100 (91%) Strand = Plus / Minus Query: 548 ctgagtgatccaccgggggagttgacgaagagccggatgtcagattcggagtccatggcg 607 ||||||||||| || ||||||||||||||||| ||||||||||| | || ||| | |||| Sbjct: 124859 ctgagtgatcccccaggggagttgacgaagaggcggatgtcagagttggggtcgacggcg 124800 Query: 608 tcgaggaggaggagctggctgacgacggcgtcggcgagga 647 |||||||||||||||||||||||||| ||||||||||||| Sbjct: 124799 tcgaggaggaggagctggctgacgactgcgtcggcgagga 124760
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 507 bits (256), Expect = e-140 Identities = 430/488 (88%) Strand = Plus / Minus Query: 65 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 124 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 22671588 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 22671529 Query: 125 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 184 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 22671528 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 22671469 Query: 185 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 244 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 22671468 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 22671409 Query: 245 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 304 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 22671408 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 22671349 Query: 305 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 364 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 22671348 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 22671289 Query: 365 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 424 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 22671288 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 22671229 Query: 425 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 484 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 22671228 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 22671169 Query: 485 attccaatagtggatacatctgccctcaccagctgcattacatcgtagatagccattgtc 544 | |||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 22671168 aatccaatagtggaaacatctgccctcacgagctgcattacatcatagatggccattgtt 22671109 Query: 545 gcactgag 552 || ||||| Sbjct: 22671108 gcgctgag 22671101 Score = 127 bits (64), Expect = 5e-26 Identities = 91/100 (91%) Strand = Plus / Minus Query: 548 ctgagtgatccaccgggggagttgacgaagagccggatgtcagattcggagtccatggcg 607 ||||||||||| || ||||||||||||||||| ||||||||||| | || ||| | |||| Sbjct: 22670190 ctgagtgatcccccaggggagttgacgaagaggcggatgtcagagttggggtcgacggcg 22670131 Query: 608 tcgaggaggaggagctggctgacgacggcgtcggcgagga 647 |||||||||||||||||||||||||| ||||||||||||| Sbjct: 22670130 tcgaggaggaggagctggctgacgactgcgtcggcgagga 22670091
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 507 bits (256), Expect = e-140 Identities = 430/488 (88%) Strand = Plus / Minus Query: 65 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 124 |||||||||||||||||||||||||| || ||||| |||||||| || |||||||||| | Sbjct: 22684056 tagtatatctcatcatctgggacatcaggtgtaaggaacttctgtggatccttgtacagt 22683997 Query: 125 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 184 ||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| ||| Sbjct: 22683996 tcctcgtagttgtatttcggcttcaccctctccgggacaggctcaagtgggatgatactg 22683937 Query: 185 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 244 ||| |||| || |||| || |||| ||||||||| || ||||||||||||||||| ||| Sbjct: 22683936 tctccgtcgattacactgtcgatgagcccgtaatcaacagcctcaagaggacccatatat 22683877 Query: 245 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 304 | ||| ||||| ||||||||||| ||||||||| | |||||||| || || |||||||| Sbjct: 22683876 ctgtctctatcaatgtctttctcaacctgctccggagtgcgtcctgtgaaacctgatata 22683817 Query: 305 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 364 ||||||||||||||||||||| ||| || || |||||||| |||||||| ||||||||| Sbjct: 22683816 agccggatgacattcctcttgttagtcaatatctccttggcctggacctcgacatccaag 22683757 Query: 365 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 424 ||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| Sbjct: 22683756 gcctgcccacttgcgcctccaacgggctgatggatcattatcctggtgttgggcatggcg 22683697 Query: 425 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 484 || || |||||||||| |||||||||||||| ||||||||| ||||| |||||||||||| Sbjct: 22683696 aatcgcttgccctttgtgccaccaccaaggattatagaagcagtggaaccagctatgccc 22683637 Query: 485 attccaatagtggatacatctgccctcaccagctgcattacatcgtagatagccattgtc 544 | |||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 22683636 aatccaatagtggaaacatctgccctcacgagctgcattacatcatagatggccattgtt 22683577 Query: 545 gcactgag 552 || ||||| Sbjct: 22683576 gcgctgag 22683569 Score = 127 bits (64), Expect = 5e-26 Identities = 91/100 (91%) Strand = Plus / Minus Query: 548 ctgagtgatccaccgggggagttgacgaagagccggatgtcagattcggagtccatggcg 607 ||||||||||| || ||||||||||||||||| ||||||||||| | || ||| | |||| Sbjct: 22682658 ctgagtgatcccccaggggagttgacgaagaggcggatgtcagagttggggtcgacggcg 22682599 Query: 608 tcgaggaggaggagctggctgacgacggcgtcggcgagga 647 |||||||||||||||||||||||||| ||||||||||||| Sbjct: 22682598 tcgaggaggaggagctggctgacgactgcgtcggcgagga 22682559
>gb|BT019171.1| Zea mays clone Contig840.F mRNA sequence Length = 1218 Score = 505 bits (255), Expect = e-140 Identities = 501/583 (85%) Strand = Plus / Plus Query: 65 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 124 |||||||||||||||||||||||||| || |||||||||||||| || |||||||||| Sbjct: 237 tagtatatctcatcatctgggacatctggtgtaagaaacttctgtggatccttgtacagc 296 Query: 125 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 184 || || |||||||| ||||| ||||||||||| || || |||||||||||||| || ||| Sbjct: 297 tcttcgtagttgtacttaggcttcaccctctccgggacaggctcaagtgggataatactg 356 Query: 185 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 244 ||| | || ||||| |||||||||| || ||||| || ||||| ||||| |||||||| Sbjct: 357 tctccatcgatcacgccatcaatgagtccataatcgacagcctcgagagggcccatgtaa 416 Query: 245 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 304 || || || || |||||||||||||||||||| | ||||| || || |||||||||| Sbjct: 417 cgatctctgtcaatgtctttctctacctgctcaggagtgcgacctgtgaagcctgatacg 476 Query: 305 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 364 | ||| ||||||||||||||| | | || || ||||| ||||||||||||||||| | | Sbjct: 477 atccgaatgacattcctcttgttggtcaatatctccttcgcttggacctctacatctagg 536 Query: 365 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 424 ||||| ||||| || ||||| || |||||||| |||||||||||||||||||||||||| Sbjct: 537 gcctgcccacttgcacctccgacaggctgatggatcataatcctggtgttgggcatggca 596 Query: 425 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 484 || || |||||||| | |||||||||||||| |||||||||||| ||||||||||||||| Sbjct: 597 aatcgcttgcccttcgtgccaccaccaaggattatagaagctgttgatccagctatgccc 656 Query: 485 attccaatagtggatacatctgccctcaccagctgcattacatcgtagatagccattgtc 544 |||||||||||||| || ||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 657 attccaatagtggacacgtctgccctcacaagctgcattacatcatagatggccattgtt 716 Query: 545 gcactgagtgatccaccgggggagttgacgaagagccggatgtcagattcggagtccatg 604 || || || ||||| || || |||||||||||||| ||||||||||| || | ||| ||| Sbjct: 717 gcgctaagggatccccctggtgagttgacgaagaggcggatgtcagagtccgggtcgatg 776 Query: 605 gcgtcgaggaggaggagctggctgacgacggcgtcggcgagga 647 ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 777 gcgtcaaggaggaggagctggctgacgacggcgtccgcgagga 819
>gb|AY108536.1| Zea mays PCO126310 mRNA sequence Length = 1320 Score = 498 bits (251), Expect = e-137 Identities = 500/583 (85%) Strand = Plus / Minus Query: 65 tagtatatctcatcatctgggacatccggcgtaagaaacttctgagggtccttgtacatt 124 |||||||||||||||||||||||||| || |||||||||||||| || |||||||||| Sbjct: 990 tagtatatctcatcatctgggacatctggtgtaagaaacttctgtggatccttgtacagc 931 Query: 125 tcctcatagttgtatttaggtttcaccctctctggaaccggctcaagtgggatgatgctg 184 || || |||||||| ||||| ||||||||||| || || |||||||||||||| || ||| Sbjct: 930 tcttcgtagttgtacttaggcttcaccctctccgggacaggctcaagtgggataatactg 871 Query: 185 tcttcgtcaatcacaccatcaatgatcccgtaatccacggcctcaagaggacccatgtat 244 ||| | || ||||| |||||||||| || ||||| || ||||| ||||| |||||||| Sbjct: 870 tctccatcgatcacgccatcaatgagtccataatcgacagcctcgagagggcccatgtaa 811 Query: 245 cggtccctatcgatgtctttctctacctgctccagtgtgcgtcccgtaaagcctgatatc 304 || || || || |||||||||||||||||||| | ||||| || || |||||||||| Sbjct: 810 cgatctctgtcaatgtctttctctacctgctcaggagtgcggcctgtgaagcctgatacg 751 Query: 305 agccggatgacattcctcttgctagccagaatttccttggcttggacctctacatccaag 364 | ||| ||||||||||||||| | | || || ||||| ||||||||||||||||| | | Sbjct: 750 atccgaatgacattcctcttgttggtcaatatctccttcgcttggacctctacatctagg 691 Query: 365 gcctggccactcgcgcctcccacgggctgatgcatcataatcctggtgttgggcatggcg 424 ||||| || || || ||||| || |||||||| |||||||||||||||||||||||||| Sbjct: 690 gcctgcccgcttgcacctccgacaggctgatggatcataatcctggtgttgggcatggca 631 Query: 425 aaccgtttgccctttgcgccaccaccaaggagtatagaagctgtggatccagctatgccc 484 || || |||||||| | |||||||||||||| |||||||||||| ||||||||||||||| Sbjct: 630 aatcgcttgcccttcgtgccaccaccaaggattatagaagctgttgatccagctatgccc 571 Query: 485 attccaatagtggatacatctgccctcaccagctgcattacatcgtagatagccattgtc 544 |||||||||||||| || ||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 570 attccaatagtggacacgtctgccctcacaagctgcattacatcatagatggccattgtt 511 Query: 545 gcactgagtgatccaccgggggagttgacgaagagccggatgtcagattcggagtccatg 604 || || || ||||| || || |||||||||||||| ||||||||||| || | ||| ||| Sbjct: 510 gcgctaagggatccccctggtgagttgacgaagaggcggatgtcagagtccgggtcgatg 451 Query: 605 gcgtcgaggaggaggagctggctgacgacggcgtcggcgagga 647 ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 450 gcgtcaaggaggaggagctggctgacgacggcgtccgcgagga 408
>ref|XM_784666.1| PREDICTED: Strongylocentrotus purpuratus similar to Centromeric protein E (CENP-E protein) (LOC584818), mRNA Length = 1306 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 334 aatttccttggcttggacctct 355 |||||||||||||||||||||| Sbjct: 255 aatttccttggcttggacctct 234
>gb|BC031925.1| Mus musculus phosphodiesterase 6A, cGMP-specific, rod, alpha, mRNA (cDNA clone MGC:25111 IMAGE:4501123), complete cds Length = 3278 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 609 cgaggaggaggagctggctga 629 ||||||||||||||||||||| Sbjct: 1552 cgaggaggaggagctggctga 1572
>ref|NM_146086.2| Mus musculus phosphodiesterase 6A, cGMP-specific, rod, alpha (Pde6a), mRNA Length = 4230 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 609 cgaggaggaggagctggctga 629 ||||||||||||||||||||| Sbjct: 1552 cgaggaggaggagctggctga 1572
>ref|XM_994360.1| PREDICTED: Mus musculus similar to phosphodiesterase 6A, cGMP-specific, rod, alpha (LOC672557), mRNA Length = 2477 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 609 cgaggaggaggagctggctga 629 ||||||||||||||||||||| Sbjct: 1568 cgaggaggaggagctggctga 1588
>gb|AC121903.2| Mus musculus BAC clone RP24-174G24 from 18, complete sequence Length = 172114 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 609 cgaggaggaggagctggctga 629 ||||||||||||||||||||| Sbjct: 99909 cgaggaggaggagctggctga 99889
>ref|XM_736534.1| Plasmodium chabaudi chabaudi hypothetical protein (PC105982.00.0) partial mRNA Length = 222 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 tcttcgtcaatcacaccatca 205 ||||||||||||||||||||| Sbjct: 50 tcttcgtcaatcacaccatca 30
>gb|BC044892.1| Mus musculus phosphodiesterase 6A, cGMP-specific, rod, alpha, mRNA (cDNA clone MGC:25410 IMAGE:4527430), complete cds Length = 4230 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 609 cgaggaggaggagctggctga 629 ||||||||||||||||||||| Sbjct: 1552 cgaggaggaggagctggctga 1572
>ref|XM_225895.3| PREDICTED: Rattus norvegicus phosphodiesterase 6A, cGMP-specific, rod, alpha (predicted) (Pde6a_predicted), mRNA Length = 2587 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 609 cgaggaggaggagctggctga 629 ||||||||||||||||||||| Sbjct: 1450 cgaggaggaggagctggctga 1470
>emb|X60664.1|MMPA Murine MPA gene for rod phosphodiesterase alpha-subunit Length = 3221 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 609 cgaggaggaggagctggctga 629 ||||||||||||||||||||| Sbjct: 1560 cgaggaggaggagctggctga 1580
>ref|XM_363163.1| Magnaporthe grisea 70-15 hypothetical protein (MG08747.4) partial cds Length = 672 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 612 ggaggaggagctggctgacgacggcgtcggcg 643 |||||||||| |||||||||||||| ||||| Sbjct: 109 ggaggaggaggcggctgacgacggcggcggcg 78
>ref|XM_367220.1| Magnaporthe grisea 70-15 hypothetical protein (MG07145.4) partial mRNA Length = 2301 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 606 cgtcgaggaggaggagctgg 625 |||||||||||||||||||| Sbjct: 1293 cgtcgaggaggaggagctgg 1312
>gb|AF039043.1| Caenorhabditis elegans cosmid F39C12, complete sequence Length = 40233 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 ttgctagccagaatttcctt 342 |||||||||||||||||||| Sbjct: 18305 ttgctagccagaatttcctt 18286
>emb|AL732602.5| Human DNA sequence from clone RP11-517D11 on chromosome X Contains the 3' end of a aldo-keto reductase family 1 member B1 (aldose reductase) (AKR1B1) pseudogene, a apoptosis inhibitor 5 (API5) pseudogene and the AGTR2 gene for type 2 angiotensin II receptor, complete sequence Length = 145388 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tcgatgtctttctctacctg 273 |||||||||||||||||||| Sbjct: 90484 tcgatgtctttctctacctg 90503
>emb|AL353147.10| Human DNA sequence from clone RP11-188P8 on chromosome 10 Contains the 3' end of a novel gene, a NADH dehydrogenase 2 (MTND2) pseudogene, the 5' end of the gene for tumor endothelial marker 7-related precursor (TEM7R) (FLJ14623) and a CpG island, complete sequence Length = 98002 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 gctagcttagtatatgactg 53 |||||||||||||||||||| Sbjct: 95817 gctagcttagtatatgactg 95798
>emb|X57144.1|HHRNAPOP H. halobium RNA polymerase subunit operon Length = 11208 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 604 ggcgtcgaggaggaggagct 623 |||||||||||||||||||| Sbjct: 3563 ggcgtcgaggaggaggagct 3582
>gb|AC154574.2| Mus musculus BAC clone RP23-399K3 from chromosome 14, complete sequence Length = 180263 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ttagtatatgactgacaggc 59 |||||||||||||||||||| Sbjct: 90836 ttagtatatgactgacaggc 90855
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 595 ggagtccatggcgtcgagga 614 |||||||||||||||||||| Sbjct: 1349663 ggagtccatggcgtcgagga 1349644
>gb|AE005138.1| Halobacterium sp. NRC-1 section 169 of 170 of the complete genome Length = 10529 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 604 ggcgtcgaggaggaggagct 623 |||||||||||||||||||| Sbjct: 8270 ggcgtcgaggaggaggagct 8251
>gb|AY832046.1| Amborella trichopoda cytochrome c biogenesis ccmC (ccmC) gene, partial cds; mitochondrial Length = 628 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 ctatgcccattccaatagtg 496 |||||||||||||||||||| Sbjct: 487 ctatgcccattccaatagtg 506 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,177,650 Number of Sequences: 3902068 Number of extensions: 5177650 Number of successful extensions: 91294 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91159 Number of HSP's gapped (non-prelim): 133 length of query: 647 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 624 effective length of database: 17,143,297,704 effective search space: 10697417767296 effective search space used: 10697417767296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)