ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16i24 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK110919.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-C12, full insert sequence Length = 1481 Score = 555 bits (280), Expect = e-155 Identities = 502/576 (87%) Strand = Plus / Minus Query: 71 ttcctctgctctagcttgtatctcttttatatattcgacaagtacccgttgctgataaga 130 |||||| |||||||| ||||||||||||| |||||| || |||| || ||||||||||| Sbjct: 1039 ttcctccgctctagcctgtatctcttttagatattcaacgagtatgcgctgctgataaga 980 Query: 131 acctccttccgtgcgaatcaagattctctcaattctcttcttggtaacagcgtaaaattc 190 ||||||||| |||||||| |||| |||||||||||||||||| ||||||| |||||||| Sbjct: 979 acctccttctgtgcgaattaagactctctcaattctcttctttataacagcataaaattc 920 Query: 191 ttcaggtgaaacatctccctttccaactgtaagtccatcaagcaacagcctattccagtc 250 ||| |||||||||| ||| || || ||||| | ||||||||||||||| | ||||| || Sbjct: 919 ttctggtgaaacatttcctttccccactgttaacccatcaagcaacagcttgttccactc 860 Query: 251 attttcaggagcctctattatcgattcaagaaacttttcaggcactacaacctctccccc 310 ||||| ||||||| ||||| ||||||||||| |||||||||||| || |||||||| Sbjct: 859 gttttccggagcctttattacagattcaagaaaactttcaggcactattacttctccccc 800 Query: 311 tttataagcgtaactacgcttttggagaaagttggaagcatatagttgcaacaccttctg 370 ||| |||||||||||||||||||||||||| ||||| ||||| || |||||||||||||| Sbjct: 799 tttgtaagcgtaactacgcttttggagaaaattggacgcatacagctgcaacaccttctg 740 Query: 371 cagcattacttgaagccctggcttatctacatcttctttagcttgcctcagctgagcatt 430 |||||| ||||||| ||||| |||||| |||||| |||||| ||||||| ||||||||| Sbjct: 739 cagcatagcttgaagtcctggtttatctccatcttgtttagcctgcctcaactgagcatt 680 Query: 431 aacttctgacagaaaactctcatctagctgtccttctttttctctgtttgatatttcttt 490 ||| ||||||||||| | || ||||||||||||||||||||||| ||||| |||||||| Sbjct: 679 aacctctgacagaaatccttcgtctagctgtccttctttttctctatttgaaatttcttt 620 Query: 491 ttccatcaatttaagagcctccggatttcttggcggccacatcgcatcttctccttcatt 550 ||||||||||| ||||||||||||| ||| || |||||| | || | ||| ||||| | Sbjct: 619 ctccatcaatttgagagcctccggatctctcggtggccacgtggcgttttcaccttcgtg 560 Query: 551 cataacaggactaataattgccttcagaacatcagtcgactgttcaatcttctcatcagt 610 ||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 559 catcacaggactaataattgccttcagcacatcagttgactgttcaatcttttcatcagt 500 Query: 611 cttgtggacgacacggtcaactatgttcatgacatt 646 ||| ||||| | |||||||||||||||||||||||| Sbjct: 499 cttatggacaagacggtcaactatgttcatgacatt 464
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 119 bits (60), Expect = 1e-23 Identities = 93/104 (89%) Strand = Plus / Plus Query: 309 cctttataagcgtaactacgcttttggagaaagttggaagcatatagttgcaacaccttc 368 ||||| |||||||||||||||||||||||||| ||||| ||||| || |||||||||||| Sbjct: 20498831 cctttgtaagcgtaactacgcttttggagaaaattggacgcatacagctgcaacaccttc 20498890 Query: 369 tgcagcattacttgaagccctggcttatctacatcttctttagc 412 |||||||| ||||||| ||||| |||||| |||||| |||||| Sbjct: 20498891 tgcagcatagcttgaagtcctggtttatctccatcttgtttagc 20498934 Score = 109 bits (55), Expect = 1e-20 Identities = 100/115 (86%) Strand = Plus / Plus Query: 487 ctttttccatcaatttaagagcctccggatttcttggcggccacatcgcatcttctcctt 546 |||| ||||||||||| ||||||||||||| ||| || |||||| | || | ||| |||| Sbjct: 20499361 ctttctccatcaatttgagagcctccggatctctcggtggccacgtggcgttttcacctt 20499420 Query: 547 cattcataacaggactaataattgccttcagaacatcagtcgactgttcaatctt 601 | | ||| ||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 20499421 cgtgcatcacaggactaataattgccttcagcacatcagttgactgttcaatctt 20499475 Score = 99.6 bits (50), Expect = 1e-17 Identities = 104/122 (85%) Strand = Plus / Plus Query: 141 gtgcgaatcaagattctctcaattctcttcttggtaacagcgtaaaattcttcaggtgaa 200 |||||||| |||| |||||||||||||||||| ||||||| ||||||||||| |||||| Sbjct: 20498492 gtgcgaattaagactctctcaattctcttctttataacagcataaaattcttctggtgaa 20498551 Query: 201 acatctccctttccaactgtaagtccatcaagcaacagcctattccagtcattttcagga 260 |||| ||| || || ||||| | ||||||||||||||| | ||||| || ||||| ||| Sbjct: 20498552 acatttcctttccccactgttaacccatcaagcaacagcttgttccactcgttttccgga 20498611 Query: 261 gc 262 || Sbjct: 20498612 gc 20498613 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 414 tgcctcagctgagcattaacttctgacagaaaactctcatctagctgtccttctttttct 473 ||||||| |||||||||||| ||||||||||| | || ||||||||||||||||||||| Sbjct: 20499039 tgcctcaactgagcattaacctctgacagaaatccttcgtctagctgtccttctttttct 20499098 Query: 474 ctgtttgatatttc 487 || ||||| ||||| Sbjct: 20499099 ctatttgaaatttc 20499112 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 71 ttcctctgctctagcttgtatctcttttatatattcgacaagtacccgttgctgataaga 130 |||||| |||||||| ||||||||||||| |||||| || |||| || ||||||||||| Sbjct: 20498294 ttcctccgctctagcctgtatctcttttagatattcaacgagtatgcgctgctgataaga 20498353 Query: 131 acctccttcc 140 |||||||||| Sbjct: 20498354 acctccttcc 20498363 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 604 catcagtcttgtggacgacacggtcaactatgttcatgacatt 646 |||||||||| ||||| | |||||||||||||||||||||||| Sbjct: 20499590 catcagtcttatggacaagacggtcaactatgttcatgacatt 20499632
>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1254_E07 Length = 124028 Score = 119 bits (60), Expect = 1e-23 Identities = 93/104 (89%) Strand = Plus / Plus Query: 309 cctttataagcgtaactacgcttttggagaaagttggaagcatatagttgcaacaccttc 368 ||||| |||||||||||||||||||||||||| ||||| ||||| || |||||||||||| Sbjct: 16478 cctttgtaagcgtaactacgcttttggagaaaattggacgcatacagctgcaacaccttc 16537 Query: 369 tgcagcattacttgaagccctggcttatctacatcttctttagc 412 |||||||| ||||||| ||||| |||||| |||||| |||||| Sbjct: 16538 tgcagcatagcttgaagtcctggtttatctccatcttgtttagc 16581 Score = 109 bits (55), Expect = 1e-20 Identities = 100/115 (86%) Strand = Plus / Plus Query: 487 ctttttccatcaatttaagagcctccggatttcttggcggccacatcgcatcttctcctt 546 |||| ||||||||||| ||||||||||||| ||| || |||||| | || | ||| |||| Sbjct: 17008 ctttctccatcaatttgagagcctccggatctctcggtggccacgtggcgttttcacctt 17067 Query: 547 cattcataacaggactaataattgccttcagaacatcagtcgactgttcaatctt 601 | | ||| ||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 17068 cgtgcatcacaggactaataattgccttcagcacatcagttgactgttcaatctt 17122 Score = 99.6 bits (50), Expect = 1e-17 Identities = 104/122 (85%) Strand = Plus / Plus Query: 141 gtgcgaatcaagattctctcaattctcttcttggtaacagcgtaaaattcttcaggtgaa 200 |||||||| |||| |||||||||||||||||| ||||||| ||||||||||| |||||| Sbjct: 16139 gtgcgaattaagactctctcaattctcttctttataacagcataaaattcttctggtgaa 16198 Query: 201 acatctccctttccaactgtaagtccatcaagcaacagcctattccagtcattttcagga 260 |||| ||| || || ||||| | ||||||||||||||| | ||||| || ||||| ||| Sbjct: 16199 acatttcctttccccactgttaacccatcaagcaacagcttgttccactcgttttccgga 16258 Query: 261 gc 262 || Sbjct: 16259 gc 16260 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 414 tgcctcagctgagcattaacttctgacagaaaactctcatctagctgtccttctttttct 473 ||||||| |||||||||||| ||||||||||| | || ||||||||||||||||||||| Sbjct: 16686 tgcctcaactgagcattaacctctgacagaaatccttcgtctagctgtccttctttttct 16745 Query: 474 ctgtttgatatttc 487 || ||||| ||||| Sbjct: 16746 ctatttgaaatttc 16759 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 71 ttcctctgctctagcttgtatctcttttatatattcgacaagtacccgttgctgataaga 130 |||||| |||||||| ||||||||||||| |||||| || |||| || ||||||||||| Sbjct: 15941 ttcctccgctctagcctgtatctcttttagatattcaacgagtatgcgctgctgataaga 16000 Query: 131 acctccttcc 140 |||||||||| Sbjct: 16001 acctccttcc 16010 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 604 catcagtcttgtggacgacacggtcaactatgttcatgacatt 646 |||||||||| ||||| | |||||||||||||||||||||||| Sbjct: 17237 catcagtcttatggacaagacggtcaactatgttcatgacatt 17279
>gb|AC155346.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH081N08, complete sequence Length = 56991 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 420 agctgagcattaacttctgacagaaaactctcatctagctgtccttctttttc 472 ||||||||| |||||||||| ||||||| ||||||| |||||||||||||| Sbjct: 48703 agctgagcactaacttctgaaagaaaaccttcatctaattgtccttctttttc 48651
>ref|NM_127710.2| Arabidopsis thaliana unknown protein AT2G21385 mRNA, complete cds Length = 1178 Score = 56.0 bits (28), Expect = 2e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 401 atcttctttagcttgcctcagctgagcattaacttctgacagaaaactctcatctagctg 460 ||||||||| || |||| |||||||||||||||||||| ||||| | ||||||| || Sbjct: 722 atcttcttttgcctgccggagctgagcattaacttctgaaagaaatccttcatctaattg 663 Query: 461 tccttctttttc 472 ||||||||||| Sbjct: 662 cccttctttttc 651
>gb|AY142675.1| Arabidopsis thaliana unknown protein (At2g21385) mRNA, complete cds Length = 1024 Score = 56.0 bits (28), Expect = 2e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 401 atcttctttagcttgcctcagctgagcattaacttctgacagaaaactctcatctagctg 460 ||||||||| || |||| |||||||||||||||||||| ||||| | ||||||| || Sbjct: 639 atcttcttttgcctgccggagctgagcattaacttctgaaagaaatccttcatctaattg 580 Query: 461 tccttctttttc 472 ||||||||||| Sbjct: 579 cccttctttttc 568
>gb|AY045792.1| Arabidopsis thaliana unknown protein (At2g21385) mRNA, complete cds Length = 1199 Score = 56.0 bits (28), Expect = 2e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 401 atcttctttagcttgcctcagctgagcattaacttctgacagaaaactctcatctagctg 460 ||||||||| || |||| |||||||||||||||||||| ||||| | ||||||| || Sbjct: 722 atcttcttttgcctgccggagctgagcattaacttctgaaagaaatccttcatctaattg 663 Query: 461 tccttctttttc 472 ||||||||||| Sbjct: 662 cccttctttttc 651
>dbj|AK118747.1| Arabidopsis thaliana At2g21385 mRNA for unknown protein, complete cds, clone: RAFL21-09-L06 Length = 1142 Score = 56.0 bits (28), Expect = 2e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 401 atcttctttagcttgcctcagctgagcattaacttctgacagaaaactctcatctagctg 460 ||||||||| || |||| |||||||||||||||||||| ||||| | ||||||| || Sbjct: 710 atcttcttttgcctgccggagctgagcattaacttctgaaagaaatccttcatctaattg 651 Query: 461 tccttctttttc 472 ||||||||||| Sbjct: 650 cccttctttttc 639
>gb|AC006841.7| Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete sequence Length = 125045 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 420 agctgagcattaacttctgacagaaaactctcatctagctgtccttctttttc 472 |||||||||||||||||||| ||||| | ||||||| || ||||||||||| Sbjct: 48006 agctgagcattaacttctgaaagaaatccttcatctaattgcccttctttttc 47954
>gb|AC134826.4| Mus musculus BAC clone RP24-459P6 from chromosome 13, complete sequence Length = 168202 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 ttccagtcattttcaggagcct 264 |||||||||||||||||||||| Sbjct: 52319 ttccagtcattttcaggagcct 52340
>gb|AC122379.4| Mus musculus BAC clone RP23-476A7 from chromosome 13, complete sequence Length = 171737 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 243 ttccagtcattttcaggagcct 264 |||||||||||||||||||||| Sbjct: 10096 ttccagtcattttcaggagcct 10117
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 214 caactgtaagtccatcaagcaa 235 |||||||||||||||||||||| Sbjct: 28388539 caactgtaagtccatcaagcaa 28388560
>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0661G04 Length = 157292 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 214 caactgtaagtccatcaagcaa 235 |||||||||||||||||||||| Sbjct: 101117 caactgtaagtccatcaagcaa 101138
>gb|AC124744.3| Mus musculus BAC clone RP23-223E16 from 13, complete sequence Length = 199767 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 243 ttccagtcattttcaggagcct 264 |||||||||||||||||||||| Sbjct: 29636 ttccagtcattttcaggagcct 29615
>emb|BX908399.33| Zebrafish DNA sequence from clone DKEY-11K4 in linkage group 18, complete sequence Length = 106712 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 559 gactaataattgccttcagaacatca 584 ||||||||||| |||||||||||||| Sbjct: 92551 gactaataatttccttcagaacatca 92526
>gb|AC119857.10| Mus musculus chromosome 3, clone RP23-257A18, complete sequence Length = 152106 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 446 actctcatctagctgtccttc 466 ||||||||||||||||||||| Sbjct: 127326 actctcatctagctgtccttc 127346
>gb|AC103380.13| Mus musculus chromosome 1, clone RP24-263A16, complete sequence Length = 173136 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ttccagtcattttcaggagcc 263 ||||||||||||||||||||| Sbjct: 122483 ttccagtcattttcaggagcc 122503
>gb|AC026478.5| Mus musculus strain C57BL6/J chromosome 5 clone RP23-135F23, complete sequence Length = 188103 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 ttccagtcattttcaggagcc 263 ||||||||||||||||||||| Sbjct: 70682 ttccagtcattttcaggagcc 70662
>gb|AC164002.4| Mus musculus chromosome 3, clone RP24-114A9, complete sequence Length = 198340 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 actctcatctagctgtccttc 466 ||||||||||||||||||||| Sbjct: 137736 actctcatctagctgtccttc 137716
>emb|BX842590.1| Rhesus DNA sequence from clone bRH-178N19, complete sequence Length = 114431 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 gttgctgataagaacctcctt 138 ||||||||||||||||||||| Sbjct: 27210 gttgctgataagaacctcctt 27230
>gb|AC134322.25| Medicago truncatula clone mth2-17i21, complete sequence Length = 136954 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 tttctttttccatcaatttaa 504 ||||||||||||||||||||| Sbjct: 118945 tttctttttccatcaatttaa 118965
>emb|AL355879.22| Human DNA sequence from clone RP11-520F9 on chromosome 13 Contains a nuclear transcription factor Y alpha (NFYA) pseudogene and the 3' end of a novel gene (FLJ32909), complete sequence Length = 73811 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 ccctttccaactgtaagtcca 227 ||||||||||||||||||||| Sbjct: 42346 ccctttccaactgtaagtcca 42366
>gb|AC090642.11| Homo sapiens 12 BAC RP11-463N10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177607 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 tctcaattctcttcttggtaa 177 ||||||||||||||||||||| Sbjct: 148783 tctcaattctcttcttggtaa 148803
>gb|AC069282.6| Homo sapiens BAC clone RP11-61L9 from 7, complete sequence Length = 175938 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 488 tttttccatcaatttaagagc 508 ||||||||||||||||||||| Sbjct: 125582 tttttccatcaatttaagagc 125602
>gb|AC159283.2| Mus musculus BAC clone RP23-317B21 from chromosome 12, complete sequence Length = 245361 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 ttccagtcattttcaggagcc 263 ||||||||||||||||||||| Sbjct: 159996 ttccagtcattttcaggagcc 159976
>gb|AC027239.5|AC027239 Homo sapiens chromosome 11, clone RP11-528L6, complete sequence Length = 196857 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 461 tccttctttttctctgtttgatatttctttttc 493 ||||||||||||| |||||| | |||||||||| Sbjct: 160471 tccttctttttctttgtttgttttttctttttc 160503
>dbj|AP006437.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-674C21, complete sequence Length = 171400 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 461 tccttctttttctctgtttgatatttctttttc 493 ||||||||||||| |||||| | |||||||||| Sbjct: 135032 tccttctttttctttgtttgttttttctttttc 135064
>gb|M77697.5| Caenorhabditis elegans cosmid B0303, complete sequence Length = 41073 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 459 tgtccttctttttctctgttt 479 ||||||||||||||||||||| Sbjct: 4532 tgtccttctttttctctgttt 4552
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 aactgtaagtccatcaagca 234 |||||||||||||||||||| Sbjct: 3741734 aactgtaagtccatcaagca 3741715
>gb|AC118676.6| Mus musculus chromosome 7, clone RP24-178N18, complete sequence Length = 149930 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 ccagtcattttcaggagcct 264 |||||||||||||||||||| Sbjct: 63518 ccagtcattttcaggagcct 63537
>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10, complete sequence Length = 149870 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 ggcactacaacctctccccc 310 |||||||||||||||||||| Sbjct: 25943 ggcactacaacctctccccc 25924
>gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668F02, complete sequence Length = 178061 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 ggcactacaacctctccccc 310 |||||||||||||||||||| Sbjct: 168780 ggcactacaacctctccccc 168761
>gb|AC140196.3| Mus musculus BAC clone RP24-267C3 from chromosome 7, complete sequence Length = 183537 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 542 tccttcattcataacaggac 561 |||||||||||||||||||| Sbjct: 41614 tccttcattcataacaggac 41595
>ref|XM_445944.1| Candida glabrata CBS138, CAGL0E05874g partial mRNA Length = 3513 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 gttgcaacaccttctgcagc 374 |||||||||||||||||||| Sbjct: 3095 gttgcaacaccttctgcagc 3076
>gb|AC125790.2| Homo sapiens chromosome 5 clone CTD-2263N8, complete sequence Length = 106412 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 tgatatttctttttccatca 498 |||||||||||||||||||| Sbjct: 59106 tgatatttctttttccatca 59125
>emb|AL121891.22|HS1187M17 Human DNA sequence from clone RP5-1187M17 on chromosome 20 Contains the 5' end of the AVP gene for arginine vasopressin (neurophysin II), the gene KIAA0860 for a likely ortholog of mouse ubiquitin conjugating enzyme a novel gene 7 interacting protein 5, a novel gene (FLJ3149), a novel gene (KIAA0552), the C20orf116 gene, the 5' end of the ITPA gene for inosine triphosphatase (nucleoside triphosphate pyrophosphatase), a novel transcript and nine CpG islands, complete sequence Length = 125856 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 gacaagtacccgttgctgat 126 |||||||||||||||||||| Sbjct: 104620 gacaagtacccgttgctgat 104639
>gb|AC125787.2| Homo sapiens chromosome 5 clone CTD-2137I20, complete sequence Length = 117180 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tgatatttctttttccatca 498 |||||||||||||||||||| Sbjct: 102820 tgatatttctttttccatca 102801
>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence Length = 687501 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 gttgcaacaccttctgcagc 374 |||||||||||||||||||| Sbjct: 583614 gttgcaacaccttctgcagc 583595
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 cgtaaaattcttcaggtgaaacat 204 ||||||| |||||||||||||||| Sbjct: 279672 cgtaaaagtcttcaggtgaaacat 279649
>gb|AC122705.2| Homo sapiens chromosome 5 clone RP11-113N15, complete sequence Length = 68035 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 tggagaaagttggaagcata 352 |||||||||||||||||||| Sbjct: 46348 tggagaaagttggaagcata 46329
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 cgtaaaattcttcaggtgaaacat 204 ||||||| |||||||||||||||| Sbjct: 302347 cgtaaaagtcttcaggtgaaacat 302324
>gb|AC104779.4| Homo sapiens BAC clone RP11-26P13 from 4, complete sequence Length = 152861 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 tgtatctcttttatatattc 106 |||||||||||||||||||| Sbjct: 72085 tgtatctcttttatatattc 72066
>gb|AC016868.8| Homo sapiens chromosome 8, clone RP11-15G16, complete sequence Length = 155691 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 tatttctttttccatcaatt 501 |||||||||||||||||||| Sbjct: 40235 tatttctttttccatcaatt 40216
>gb|AC091900.3| Homo sapiens chromosome 5 clone RP11-158K14, complete sequence Length = 180679 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 tggagaaagttggaagcata 352 |||||||||||||||||||| Sbjct: 167026 tggagaaagttggaagcata 167045
>gb|AC010269.6| Homo sapiens chromosome 5 clone CTC-485I21, complete sequence Length = 187084 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ttgtatctcttttatatatt 105 |||||||||||||||||||| Sbjct: 134338 ttgtatctcttttatatatt 134319
>gb|AC122353.5| Mus musculus BAC clone RP23-391E17 from chromosome 16, complete sequence Length = 200401 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 tccttctttttctctgtttg 480 |||||||||||||||||||| Sbjct: 30860 tccttctttttctctgtttg 30879
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 ggcactacaacctctccccc 310 |||||||||||||||||||| Sbjct: 20027618 ggcactacaacctctccccc 20027599
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 tctcaattctcttcttggta 176 |||||||||||||||||||| Sbjct: 978022 tctcaattctcttcttggta 978041
>gb|AC079676.4|AC079676 Arabidopsis thaliana chromosome 1 BAC F6D5 genomic sequence, complete sequence Length = 29508 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 482 tatttctttttccatcaatttaag 505 ||||||| |||||||||||||||| Sbjct: 24593 tatttctatttccatcaatttaag 24570
>gb|AC012396.7|AC012396 Arabidopsis thaliana chromosome 1 BAC T9L24 genomic sequence, complete sequence Length = 90459 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 482 tatttctttttccatcaatttaag 505 ||||||| |||||||||||||||| Sbjct: 172 tatttctatttccatcaatttaag 149
>gb|AC091978.3| Homo sapiens chromosome 5 clone RP11-531A21, complete sequence Length = 192708 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ttgtatctcttttatatatt 105 |||||||||||||||||||| Sbjct: 4215 ttgtatctcttttatatatt 4196
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 cgtaaaattcttcaggtgaaacat 204 ||||||| |||||||||||||||| Sbjct: 280972 cgtaaaagtcttcaggtgaaacat 280949
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome Length = 2814816 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 cgtaaaattcttcaggtgaaacat 204 ||||||| |||||||||||||||| Sbjct: 302387 cgtaaaagtcttcaggtgaaacat 302364
>dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698G03 Length = 147857 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 tctcaattctcttcttggta 176 |||||||||||||||||||| Sbjct: 113467 tctcaattctcttcttggta 113486
>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0494A10 Length = 145576 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 tctcaattctcttcttggta 176 |||||||||||||||||||| Sbjct: 15690 tctcaattctcttcttggta 15709
>emb|BX000349.7| Zebrafish DNA sequence from clone DKEY-63L3 in linkage group 7, complete sequence Length = 173706 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ttgtatctcttttatatatt 105 |||||||||||||||||||| Sbjct: 16838 ttgtatctcttttatatatt 16857
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome Length = 2902619 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 cgtaaaattcttcaggtgaaacat 204 ||||||| |||||||||||||||| Sbjct: 297305 cgtaaaagtcttcaggtgaaacat 297282
>dbj|AP002348.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2528N2, complete sequences Length = 208600 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 468 ttttctctgtttgatatttctttt 491 ||||| |||||||||||||||||| Sbjct: 171224 ttttccctgtttgatatttctttt 171247
>emb|AL772280.10| Mouse DNA sequence from clone RP23-97P11 on chromosome 4, complete sequence Length = 152145 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 tttgatatttctttttccat 496 |||||||||||||||||||| Sbjct: 104662 tttgatatttctttttccat 104681
>gb|AC107371.17| Mus musculus chromosome 7, clone RP24-66D2, complete sequence Length = 214373 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 ccagtcattttcaggagcct 264 |||||||||||||||||||| Sbjct: 4903 ccagtcattttcaggagcct 4922
>gb|AC108818.11| Mus musculus chromosome 7, clone RP23-474B17, complete sequence Length = 180498 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 tccttcattcataacaggac 561 |||||||||||||||||||| Sbjct: 63933 tccttcattcataacaggac 63952
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 cgtaaaattcttcaggtgaaacat 204 ||||||| |||||||||||||||| Sbjct: 246750 cgtaaaagtcttcaggtgaaacat 246727
>gb|AC008601.7| Homo sapiens chromosome 5 clone CTB-105L4, complete sequence Length = 106641 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 tgtatctcttttatatattc 106 |||||||||||||||||||| Sbjct: 99467 tgtatctcttttatatattc 99486 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,763,956 Number of Sequences: 3902068 Number of extensions: 6763956 Number of successful extensions: 138632 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 138088 Number of HSP's gapped (non-prelim): 544 length of query: 656 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 633 effective length of database: 17,143,297,704 effective search space: 10851707446632 effective search space used: 10851707446632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
