ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16i23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469858.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1641 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Minus Query: 289 cggagctggaggaggagttgtcgacgggggcgttggtgcagttgctgctcgagtc 343 ||||| |||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 1203 cggagttggaggagtagatgtcgacgggggcgttggtgcagttgctgctcgagtc 1149
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Plus Query: 289 cggagctggaggaggagttgtcgacgggggcgttggtgcagttgctgctcgagtc 343 ||||| |||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 31168631 cggagttggaggagtagatgtcgacgggggcgttggtgcagttgctgctcgagtc 31168685 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 307 tgtcgacgggggcgttggtgcagttgctgctcgagtc 343 ||||||||||| | |||||||||||| |||| ||||| Sbjct: 255396 tgtcgacggggccattggtgcagttgatgcttgagtc 255432
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Plus Query: 289 cggagctggaggaggagttgtcgacgggggcgttggtgcagttgctgctcgagtc 343 ||||| |||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 89272 cggagttggaggagtagatgtcgacgggggcgttggtgcagttgctgctcgagtc 89326
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Plus Query: 289 cggagctggaggaggagttgtcgacgggggcgttggtgcagttgctgctcgagtc 343 ||||| |||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 31259154 cggagttggaggagtagatgtcgacgggggcgttggtgcagttgctgctcgagtc 31259208 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 307 tgtcgacgggggcgttggtgcagttgctgctcgagtc 343 ||||||||||| | |||||||||||| |||| ||||| Sbjct: 255396 tgtcgacggggccattggtgcagttgatgcttgagtc 255432
>dbj|AK105764.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D12, full insert sequence Length = 1635 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Minus Query: 289 cggagctggaggaggagttgtcgacgggggcgttggtgcagttgctgctcgagtc 343 ||||| |||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 1257 cggagttggaggagtagatgtcgacgggggcgttggtgcagttgctgctcgagtc 1203
>dbj|AK102620.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099H11, full insert sequence Length = 1532 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Minus Query: 289 cggagctggaggaggagttgtcgacgggggcgttggtgcagttgctgctcgagtc 343 ||||| |||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 1154 cggagttggaggagtagatgtcgacgggggcgttggtgcagttgctgctcgagtc 1100
>dbj|AK066083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050O18, full insert sequence Length = 1776 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Minus Query: 289 cggagctggaggaggagttgtcgacgggggcgttggtgcagttgctgctcgagtc 343 ||||| |||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 1340 cggagttggaggagtagatgtcgacgggggcgttggtgcagttgctgctcgagtc 1286
>gb|AY831391.1| Oryza sativa (indica cultivar-group) BTH-induced protein phosphatase 2C 2 K3 form (BIPP2C2) mRNA, complete cds, alternatively spliced Length = 1326 Score = 77.8 bits (39), Expect = 4e-11 Identities = 51/55 (92%) Strand = Plus / Minus Query: 289 cggagctggaggaggagttgtcgacgggggcgttggtgcagttgctgctcgagtc 343 ||||| |||||||| || |||||||||||||||||||||||||||| |||||||| Sbjct: 1030 cggagttggaggagtagatgtcgacgggggcgttggtgcagttgctactcgagtc 976
>gb|AY831390.1| Oryza sativa (indica cultivar-group) BTH-induced protein phosphatase 2C 2 K2 form (BIPP2C2) mRNA, complete cds, alternatively spliced Length = 1526 Score = 77.8 bits (39), Expect = 4e-11 Identities = 51/55 (92%) Strand = Plus / Minus Query: 289 cggagctggaggaggagttgtcgacgggggcgttggtgcagttgctgctcgagtc 343 ||||| |||||||| || |||||||||||||||||||||||||||| |||||||| Sbjct: 1132 cggagttggaggagtagatgtcgacgggggcgttggtgcagttgctactcgagtc 1078
>gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece Length = 120562 Score = 73.8 bits (37), Expect = 6e-10 Identities = 44/45 (97%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 544 ttgacctagctctaataccatgttaggaaatatgcaacttgtatt 588 ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 54002 ttgacctagctctaataccatgttagg-aatatgcaacttgtatt 53959
>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13, complete sequence Length = 102842 Score = 50.1 bits (25), Expect = 0.008 Identities = 35/37 (94%), Gaps = 1/37 (2%) Strand = Plus / Plus Query: 552 gctctaataccatgttaggaaatatgcaacttgtatt 588 ||||||||||||||||||| |||| |||||||||||| Sbjct: 47078 gctctaataccatgttagg-aataagcaacttgtatt 47113
>gb|AC130219.3| Mus musculus BAC clone RP23-126O16 from chromosome 15, complete sequence Length = 224179 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 174 ctgcagcagcagcagtgagatccg 197 |||||||||||||||||||||||| Sbjct: 134708 ctgcagcagcagcagtgagatccg 134685
>emb|CR931742.1| Medicago truncatula chromosome 5 clone mth2-28i20, COMPLETE SEQUENCE Length = 115743 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 550 tagctctaataccatgttaggaaa 573 |||||||||||||||||||||||| Sbjct: 57048 tagctctaataccatgttaggaaa 57025
>gb|DQ469712.1| Hordeum vulgare subsp. vulgare serine/threonine kinase-like protein ABC1036 gene, complete cds Length = 29663 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 551 agctctaataccatgttaggaaa 573 ||||||||||||||||||||||| Sbjct: 11162 agctctaataccatgttaggaaa 11140
>gb|AC146789.30| Medicago truncatula clone mth2-71h24, complete sequence Length = 127922 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 552 gctctaataccatgttaggaaatatg 577 |||||||||||||||||| ||||||| Sbjct: 108921 gctctaataccatgttagaaaatatg 108896
>ref|XM_361653.1| Magnaporthe grisea 70-15 hypothetical protein (MG04127.4) partial mRNA Length = 1281 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 aagcctgtcgtggctgcgccg 282 ||||||||||||||||||||| Sbjct: 1180 aagcctgtcgtggctgcgccg 1200
>ref|XM_427737.1| PREDICTED: Gallus gallus similar to KIAA1317 protein (LOC430182), partial mRNA Length = 452 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cggagtgctgcagcagcagca 187 ||||||||||||||||||||| Sbjct: 240 cggagtgctgcagcagcagca 220
>emb|AL162754.2|NMA3Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 3/7 Length = 311321 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 atgcgggcctgggggcggcgg 247 ||||||||||||||||||||| Sbjct: 241655 atgcgggcctgggggcggcgg 241675
>gb|AY722688.1| Arachis hypogaea conarachin mRNA, complete cds Length = 2230 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 gacgatcgacggccacggagg 491 ||||||||||||||||||||| Sbjct: 1174 gacgatcgacggccacggagg 1194
>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0080O10, from chromosome 3, complete sequence Length = 127917 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 307 tgtcgacgggggcgttggtgcagttgctgctcgagtc 343 ||||||||||| | |||||||||||| |||| ||||| Sbjct: 92463 tgtcgacggggccattggtgcagttgatgcttgagtc 92499
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 atgcgggcctgggggcggcgg 247 ||||||||||||||||||||| Sbjct: 783671 atgcgggcctgggggcggcgg 783691
>gb|AF298585.1|AF298585 TT virus Polish isolate P/1C1, complete genome Length = 3756 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 cggagctggaggaggagttgt 309 ||||||||||||||||||||| Sbjct: 2681 cggagctggaggaggagttgt 2661
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence Length = 162241 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 307 tgtcgacgggggcgttggtgcagttgctgctcgagtc 343 ||||||||||| | |||||||||||| |||| ||||| Sbjct: 7220 tgtcgacggggccattggtgcagttgatgcttgagtc 7184
>dbj|AK099959.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126F07, full insert sequence Length = 1984 Score = 42.1 bits (21), Expect = 2.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 307 tgtcgacgggggcgttggtgcagttgctgctcgagtc 343 ||||||||||| | |||||||||||| |||| ||||| Sbjct: 1741 tgtcgacggggccattggtgcagttgatgcttgagtc 1705
>emb|AJ440949.1|SSC440949 Sus scrofa chromosome 7q13-q11 genomic sequence, clone B5_T7 Length = 22811 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 141 tggaaccacctggcctggagggacg 165 ||||||||||||||||||| ||||| Sbjct: 16327 tggaaccacctggcctggaaggacg 16351
>emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chromosome X, complete sequence Length = 195413 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 ctggacggagctggaggagga 304 ||||||||||||||||||||| Sbjct: 125110 ctggacggagctggaggagga 125090
>ref|NM_202770.1| Arabidopsis thaliana unknown protein AT4G01985 mRNA, complete cds Length = 1891 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cggagctggaggaggagttg 308 |||||||||||||||||||| Sbjct: 342 cggagctggaggaggagttg 361
>gb|DQ058455.1| Rhizobium etli strain IE 954 plasmid clone REI02, partial sequence Length = 4742 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ctgctcgtgcgggcagggcg 43 |||||||||||||||||||| Sbjct: 4168 ctgctcgtgcgggcagggcg 4187
>gb|DQ058425.1| Rhizobium etli strain KIM 5 plasmid clone RED02, partial sequence Length = 4748 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ctgctcgtgcgggcagggcg 43 |||||||||||||||||||| Sbjct: 4174 ctgctcgtgcgggcagggcg 4193
>ref|NM_183733.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 435 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gggcggcggaggaccggcga 258 |||||||||||||||||||| Sbjct: 101 gggcggcggaggaccggcga 120
>gb|AC007138.1| Arabidopsis thaliana BAC T7B11 from chromosome IV near 10 cM, complete sequence Length = 120185 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 cggagctggaggaggagttg 308 |||||||||||||||||||| Sbjct: 111301 cggagctggaggaggagttg 111282
>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence Length = 355714 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 gcagcagcagcagtgagatc 195 |||||||||||||||||||| Sbjct: 211038 gcagcagcagcagtgagatc 211019
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 312 acgggggcgttggtgcagttgctgctcg 339 ||||| ||| |||||||||||||||||| Sbjct: 971698 acgggcgcgatggtgcagttgctgctcg 971671
>gb|BC008073.2| Homo sapiens family with sequence similarity 38, member A, mRNA (cDNA clone IMAGE:3029644), complete cds Length = 1655 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ggagctggaggaggagttgt 309 |||||||||||||||||||| Sbjct: 1286 ggagctggaggaggagttgt 1305
>gb|BC016983.1| Homo sapiens family with sequence similarity 38, member A, mRNA (cDNA clone IMAGE:4186028), with apparent retained intron Length = 2904 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ggagctggaggaggagttgt 309 |||||||||||||||||||| Sbjct: 2538 ggagctggaggaggagttgt 2557
>ref|NM_014745.1| Homo sapiens family with sequence similarity 38, member A (FAM38A), mRNA Length = 6368 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ggagctggaggaggagttgt 309 |||||||||||||||||||| Sbjct: 6023 ggagctggaggaggagttgt 6042
>gb|AC163668.5| Mus musculus BAC clone RP23-32P22 from chromosome 1, complete sequence Length = 222156 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ctgctgtgtgggaatccaga 83 |||||||||||||||||||| Sbjct: 161755 ctgctgtgtgggaatccaga 161774
>ref|XM_817152.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0132) partial mRNA Length = 9468 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gcagcagcagcagtgagatc 195 |||||||||||||||||||| Sbjct: 5534 gcagcagcagcagtgagatc 5553
>gb|AC137081.30| Medicago truncatula clone mth2-10j6, complete sequence Length = 132253 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 550 tagctctaataccatgttaggaaa 573 ||||||| |||||||||||||||| Sbjct: 82403 tagctctgataccatgttaggaaa 82380
>gb|AC141107.5| Medicago truncatula clone mth2-34a12, complete sequence Length = 142659 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 550 tagctctaataccatgttaggaaa 573 ||||||| |||||||||||||||| Sbjct: 136445 tagctctgataccatgttaggaaa 136422
>emb|BX842648.2| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 3/11 Length = 346416 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 cggagctggaggaggagttg 308 |||||||||||||||||||| Sbjct: 297826 cggagctggaggaggagttg 297807
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 312 acgggggcgttggtgcagttgctgctcg 339 ||||| ||| |||||||||||||||||| Sbjct: 2290400 acgggcgcgatggtgcagttgctgctcg 2290373
>emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 5 Length = 198220 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 cggagctggaggaggagttg 308 |||||||||||||||||||| Sbjct: 96654 cggagctggaggaggagttg 96635
>gb|AC175028.7| Medicago truncatula clone mth2-7e22, complete sequence Length = 131012 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 550 tagctctaataccatgttaggaaa 573 ||||||| |||||||||||||||| Sbjct: 5931 tagctctgataccatgttaggaaa 5954
>emb|CR608234.1| full-length cDNA clone CS0DC003YG24 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1343 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ggagctggaggaggagttgt 309 |||||||||||||||||||| Sbjct: 1010 ggagctggaggaggagttgt 1029
>dbj|AK092007.1| Homo sapiens cDNA FLJ34688 fis, clone MESAN2000711 Length = 2535 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ggagctggaggaggagttgt 309 |||||||||||||||||||| Sbjct: 2188 ggagctggaggaggagttgt 2207
>emb|CR605984.1| full-length cDNA clone CS0DL010YN05 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1651 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ggagctggaggaggagttgt 309 |||||||||||||||||||| Sbjct: 1317 ggagctggaggaggagttgt 1336
>dbj|D87071.1| Homo sapiens mRNA for KIAA0233 gene, complete cds Length = 6368 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ggagctggaggaggagttgt 309 |||||||||||||||||||| Sbjct: 6023 ggagctggaggaggagttgt 6042
>gb|AC149050.2| Medicago truncatula chromosome 7 BAC clone mth2-6j14, complete sequence Length = 119126 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 550 tagctctaataccatgttaggaaa 573 ||||||| |||||||||||||||| Sbjct: 15346 tagctctgataccatgttaggaaa 15323
>gb|BC113121.1| Homo sapiens cDNA clone MGC:133036 IMAGE:40008160, complete cds Length = 3174 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 ggagctggaggaggagttgt 309 |||||||||||||||||||| Sbjct: 113 ggagctggaggaggagttgt 94
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 312 acgggggcgttggtgcagttgctgctcg 339 ||||| ||| |||||||||||||||||| Sbjct: 1838069 acgggcgcgatggtgcagttgctgctcg 1838042
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gggcggcggaggaccggcga 258 |||||||||||||||||||| Sbjct: 11896245 gggcggcggaggaccggcga 11896264
>gb|AC138028.1| Homo sapiens chromosome 16 clone RP5-1142A6, complete sequence Length = 127698 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ggagctggaggaggagttgt 309 |||||||||||||||||||| Sbjct: 62987 ggagctggaggaggagttgt 63006
>dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1012D10 Length = 168267 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gggcggcggaggaccggcga 258 |||||||||||||||||||| Sbjct: 108530 gggcggcggaggaccggcga 108549
>gb|BC111689.1| Homo sapiens cDNA clone MGC:133024 IMAGE:40005472, complete cds Length = 3415 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 ggagctggaggaggagttgt 309 |||||||||||||||||||| Sbjct: 302 ggagctggaggaggagttgt 283
>gb|AC134435.3| Mus musculus BAC clone RP24-423J19 from 1, complete sequence Length = 225687 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ctgctgtgtgggaatccaga 83 |||||||||||||||||||| Sbjct: 3859 ctgctgtgtgggaatccaga 3878
>gb|AC131685.4| Mus musculus BAC clone RP23-372G24 from 1, complete sequence Length = 163474 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ctgctgtgtgggaatccaga 83 |||||||||||||||||||| Sbjct: 16269 ctgctgtgtgggaatccaga 16288
>gb|AY765604.1|AH014722S3 Rhododendron crassifolium RPB2I gene, exons 4 through 6 and partial cds Length = 1164 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 546 gacctagctctaataccatgttag 569 ||||||||||| |||||||||||| Sbjct: 298 gacctagctctgataccatgttag 275
>gb|AY765598.1|AH014721S3 Rhododendron konori RPB2I gene, exons 4 through 6 and partial cds Length = 1051 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 546 gacctagctctaataccatgttag 569 ||||||||||| |||||||||||| Sbjct: 298 gacctagctctgataccatgttag 275
>gb|AY765592.1|AH014720S3 Rhododendron herzogii RPB2I gene, exons 4 through 6 and partial cds Length = 1110 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 546 gacctagctctaataccatgttag 569 ||||||||||| |||||||||||| Sbjct: 298 gacctagctctgataccatgttag 275
>gb|AY765586.1|AH014719S3 Rhododendron radians RPB2I gene, exons 4 through 6 and partial cds Length = 1131 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 546 gacctagctctaataccatgttag 569 ||||||||||| |||||||||||| Sbjct: 298 gacctagctctgataccatgttag 275
>gb|AY765580.1|AH014718S3 Rhododendron dielsianum RPB2I gene, exons 4 through 6 and partial cds Length = 1123 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 546 gacctagctctaataccatgttag 569 ||||||||||| |||||||||||| Sbjct: 298 gacctagctctgataccatgttag 275 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,791,848 Number of Sequences: 3902068 Number of extensions: 4791848 Number of successful extensions: 124778 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124176 Number of HSP's gapped (non-prelim): 601 length of query: 592 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 569 effective length of database: 17,143,297,704 effective search space: 9754536393576 effective search space used: 9754536393576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
