ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16i22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FNDC3_HUMAN (Q9Y2H6) Fibronectin type-III domain-containing prot... 32 1.3
2PYRG_CHLTR (Q59321) CTP synthase (EC 6.3.4.2) (CTP synthase) (UT... 30 6.6

>FNDC3_HUMAN (Q9Y2H6) Fibronectin type-III domain-containing protein 3a|
          Length = 1134

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
 Frame = -2

Query: 422  VPTQAVDLREIRFDEIDDEYIVTGAVPSMSTPGRMASFHYRDTRYGR*SAHYLIEPADKE 243
            VP     L+EI  DEI++        P  S    +A    +   +G     Y I+  DK+
Sbjct: 788  VPGIVTCLQEISDDEIEN--------PHYSPSTCLAISWEKPCDHGSEILAYSIDFGDKQ 839

Query: 242  RDLQPRFDAAAIRKLYPLLVF-VSFPARSLLGAAPAPDFLCIKSSNRNPPPPSLVCNRFS 66
                 +  +  I  L P   + +   A + LGA P    + +K+    P PP L C  FS
Sbjct: 840  SLTVGKVTSYIINNLQPDTTYRIRIQALNSLGAGPFSHMIKLKTKPLPPDPPRLECVAFS 899



to top

>PYRG_CHLTR (Q59321) CTP synthase (EC 6.3.4.2) (CTP synthase) (UTP--ammonia|
           ligase)
          Length = 539

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
 Frame = -2

Query: 449 AHLENFNLEVPTQAVDLREIRFDEIDDEYIVTGAVPSMSTPGRMASFHYR-DTRYGR*SA 273
           A+    N E P   V + E +   +    +  GA P    PG +AS  Y+ D    R   
Sbjct: 400 ANSMEINPETPDPVVCMMEGQDSVVKGGTMRLGAYPCRIAPGSLASAAYKTDLVQERHRH 459

Query: 272 HYLIEPADKERDLQPRFDAAAIRKLYPLLVFVSFP-ARSLLGAAPAPDFL 126
            Y + P+  ER  +     A +  L  L   V  P  R +LG    P+FL
Sbjct: 460 RYEVNPSYIERLEEHGLKIAGVCPLGELCEIVEIPNHRWMLGVQFHPEFL 509


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,299,361
Number of Sequences: 219361
Number of extensions: 1749321
Number of successful extensions: 4386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4365
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top