ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16i09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRK6_BRAOE (Q09092) Putative serine/threonine-protein kinase rec... 50 4e-06
2CLV1_ARATH (Q9SYQ8) Receptor protein kinase CLAVATA1 precursor (... 32 1.2
3BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated rec... 30 4.7
4BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 ... 30 4.7

>SRK6_BRAOE (Q09092) Putative serine/threonine-protein kinase receptor|
           precursor (EC 2.7.11.1) (S-receptor kinase) (SRK)
          Length = 849

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = -3

Query: 591 IHIALMCVQEHADDRPTMSNVVAMLNSENVILPEPKHPAYFNLRVSKE-DESGSVLCSYN 415
           I I L+CVQE A+ RP MS+VV M  SE   +P+PK P Y   R   E D S S  C  N
Sbjct: 782 IQIGLLCVQELAEHRPAMSSVVWMFGSEATEIPQPKPPGYCVRRSPYELDPSSSWQCDEN 841

Query: 414 D 412
           +
Sbjct: 842 E 842



to top

>CLV1_ARATH (Q9SYQ8) Receptor protein kinase CLAVATA1 precursor (EC 2.7.11.1)|
          Length = 980

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = -3

Query: 585  IALMCVQEHADDRPTMSNVVAMLNS 511
            IA+MCV+E A  RPTM  VV ML +
Sbjct: 945  IAMMCVEEEAAARPTMREVVHMLTN 969



to top

>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1|
           precursor (EC 2.7.11.1) (BRI1-associated receptor kinase
           1) (Somatic embryogenesis receptor-like kinase 3)
          Length = 615

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 591 IHIALMCVQEHADDRPTMSNVVAMLNSENV 502
           I +AL+C Q    +RP MS VV ML  + +
Sbjct: 539 IQVALLCTQSSPMERPKMSEVVRMLEGDGL 568



to top

>BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 precursor (EC|
            2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2)
            (Protein VASCULAR HIGHWAY 1)
          Length = 1143

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 597  RYIHIALMCVQEHADDRPTMSNVVAML 517
            RY+ IAL CV +    RP M  VVA L
Sbjct: 1100 RYLEIALRCVDDFPSKRPNMLQVVASL 1126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,335,362
Number of Sequences: 219361
Number of extensions: 1587862
Number of successful extensions: 3737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3733
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top