ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16i08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PCSK9_HUMAN (Q8NBP7) Proprotein convertase subtilisin/kexin type... 30 4.4
2HTR4_HALSA (Q9HP84) Halobacterial transducer protein IV 30 7.6
3ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hyp... 29 9.9

>PCSK9_HUMAN (Q8NBP7) Proprotein convertase subtilisin/kexin type 9 precursor|
           (EC 3.4.21.-) (Proprotein convertase PC9)
           (Subtilisin/kexin-like protease PC9) (Neural
           apoptosis-regulated convertase 1) (NARC-1)
          Length = 692

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 406 SLHSGSGTCGEVVAQTLMQEALASLRSTTMSRKRRGVRMES 284
           S HSG       +A+    E L S  S + S KRRG RME+
Sbjct: 462 SAHSGPTRMATAIARCAPDEELLSCSSFSRSGKRRGERMEA 502



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>HTR4_HALSA (Q9HP84) Halobacterial transducer protein IV|
          Length = 810

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +1

Query: 391 NLSGGTGGESQTLSAARELPAASESHAGKTIDHL 492
           +LS  T GE+Q++SAA E  AAS S    +++ L
Sbjct: 749 DLSDSTAGEAQSVSAAAEEQAASMSEISDSVESL 782



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>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
 Frame = -3

Query: 491 RWSMVFPAWDSDAAGSSRAAESVWDSPPV-------PPLRFR 387
           +W  +   WD  AAG   +  SVWD  PV       PP  FR
Sbjct: 330 QWRNLQIGWDESAAGDRPSRVSVWDIEPVLTPFYICPPPFFR 371


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,164,793
Number of Sequences: 219361
Number of extensions: 1384214
Number of successful extensions: 3728
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3728
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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