ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16h24 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK122146.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138B10, full insert sequence Length = 534 Score = 123 bits (62), Expect = 5e-25 Identities = 137/162 (84%) Strand = Plus / Minus Query: 184 ttcactcctttttcccgatcccgttagacatgttgtagatcccacgaccaatcatgaaca 243 |||||||||||||||||| || | |||||||||||| | |||||| || ||||| |||| Sbjct: 341 ttcactcctttttcccgactccatgagacatgttgtacaccccacggcctatcataaaca 282 Query: 244 agctggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcgtaacggcctt 303 |||||||| | ||||| || |||||||||||||||||| ||||| |||| ||||| |||| Sbjct: 281 agctggaggcggcaagagcgaggggaatggcaacggaggtgaccacatcataacgccctt 222 Query: 304 taaggtggatatgcttgctcaagttctggaaatactgctgct 345 | || | | |||||| |||||||||| ||||||||||||| Sbjct: 221 tcagatacgtgtgcttggtcaagttctgaaaatactgctgct 180
>dbj|AK063787.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-E01, full insert sequence Length = 622 Score = 123 bits (62), Expect = 5e-25 Identities = 137/162 (84%) Strand = Plus / Minus Query: 184 ttcactcctttttcccgatcccgttagacatgttgtagatcccacgaccaatcatgaaca 243 |||||||||||||||||| || | |||||||||||| | |||||| || ||||| |||| Sbjct: 257 ttcactcctttttcccgactccatgagacatgttgtacaccccacggcctatcataaaca 198 Query: 244 agctggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcgtaacggcctt 303 |||||||| | ||||| || |||||||||||||||||| ||||| |||| ||||| |||| Sbjct: 197 agctggaggcggcaagagcgaggggaatggcaacggaggtgaccacatcataacgccctt 138 Query: 304 taaggtggatatgcttgctcaagttctggaaatactgctgct 345 | || | | |||||| |||||||||| ||||||||||||| Sbjct: 137 tcagatacgtgtgcttggtcaagttctgaaaatactgctgct 96
>gb|BT016940.1| Zea mays clone E04912704F04.c mRNA sequence Length = 462 Score = 111 bits (56), Expect = 2e-21 Identities = 128/152 (84%) Strand = Plus / Plus Query: 185 tcactcctttttcccgatcccgttagacatgttgtagatcccacgaccaatcatgaacaa 244 ||||||||||||||| || || | |||||||||||| | ||||| ||||||||||||| Sbjct: 165 tcactcctttttcccaattccatgagacatgttgtaaactccacgcccaatcatgaacat 224 Query: 245 gctggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcgtaacggccttt 304 ||||||| ||||||| ||||| || |||||||||||| ||| | ||||||| || ||||| Sbjct: 225 gctggaggcagcaagtgcaagagggatggcaacggaggtgatcacatcgtagcgcccttt 284 Query: 305 aaggtggatatgcttgctcaagttctggaaat 336 |||| | | |||||| ||| ||||||||||| Sbjct: 285 caggtaggtgtgcttggtcatgttctggaaat 316
>ref|XM_479340.1| Oryza sativa (japonica cultivar-group), mRNA Length = 483 Score = 107 bits (54), Expect = 3e-20 Identities = 161/197 (81%) Strand = Plus / Minus Query: 187 actcctttttcccgatcccgttagacatgttgtagatcccacgaccaatcatgaacaagc 246 |||| |||||||| || |||| ||||||||||| | ||||| |||||||||||||||| Sbjct: 294 actcttttttcccaataccgtgggacatgttgtaaactccacggccaatcatgaacaagc 235 Query: 247 tggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcgtaacggcctttaa 306 ||| |||||| |||||||||||||||||||| || ||| | |||||||||| || || | Sbjct: 234 tggtgccagccagcgcaaggggaatggcaacagatgtgatcacatcgtaacgccccttca 175 Query: 307 ggtggatatgcttgctcaagttctggaaatactgctgcttctgaacaagcttctcacgtg 366 ||| | | |||||| | || ||||| ||||| ||||| | || || ||||||||||||| Sbjct: 174 ggtaggtgtgcttggttaaattctgaaaatattgctgttgcttaaacagcttctcacgtg 115 Query: 367 ggtaaaatggngcctct 383 | |||||| |||||| Sbjct: 114 gcacaaatggtgcctct 98
>dbj|AK058954.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-B01, full insert sequence Length = 483 Score = 105 bits (53), Expect = 1e-19 Identities = 149/181 (82%) Strand = Plus / Minus Query: 187 actcctttttcccgatcccgttagacatgttgtagatcccacgaccaatcatgaacaagc 246 |||| |||||||| || |||| ||||||||||| | ||||| |||||||||||||||| Sbjct: 294 actcttttttcccaataccgtgggacatgttgtaaactccacggccaatcatgaacaagc 235 Query: 247 tggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcgtaacggcctttaa 306 ||| |||||| |||||||||||||||||||| || ||| | |||||||||| || || | Sbjct: 234 tggtgccagccagcgcaaggggaatggcaacagatgtgatcacatcgtaacgccccttca 175 Query: 307 ggtggatatgcttgctcaagttctggaaatactgctgcttctgaacaagcttctcacgtg 366 ||| | | |||||| | || ||||| ||||| ||||| | || || ||||||||||||| Sbjct: 174 ggtaggtgtgcttggttaaattctgaaaatattgctgttgcttaaacagcttctcacgtg 115 Query: 367 g 367 | Sbjct: 114 g 114
>gb|AY111015.1| Zea mays CL4951_1 mRNA sequence Length = 656 Score = 103 bits (52), Expect = 5e-19 Identities = 127/152 (83%) Strand = Plus / Minus Query: 185 tcactcctttttcccgatcccgttagacatgttgtagatcccacgaccaatcatgaacaa 244 ||||||||| ||||| || || | |||||||||||| | ||||| ||||||||||||| Sbjct: 284 tcactccttcttcccaattccatgagacatgttgtaaactccacgcccaatcatgaacat 225 Query: 245 gctggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcgtaacggccttt 304 ||||||| ||||||| ||||| || |||||||||||| ||| | ||||||| || ||||| Sbjct: 224 gctggaggcagcaagtgcaagagggatggcaacggaggtgatcacatcgtagcgcccttt 165 Query: 305 aaggtggatatgcttgctcaagttctggaaat 336 |||| | | |||||| ||| ||||||||||| Sbjct: 164 caggtaggtgtgcttggtcatgttctggaaat 133
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 89.7 bits (45), Expect = 7e-15 Identities = 125/152 (82%) Strand = Plus / Minus Query: 232 caatcatgaacaagctggagccagcaagcgcaaggggaatggcaacggagatgaccgcat 291 |||||||||||||||||| |||||| |||||||||||||||||||| || ||| | ||| Sbjct: 26987914 caatcatgaacaagctggtgccagccagcgcaaggggaatggcaacagatgtgatcacat 26987855 Query: 292 cgtaacggcctttaaggtggatatgcttgctcaagttctggaaatactgctgcttctgaa 351 ||||||| || || |||| | | |||||| | || ||||| ||||| ||||| | || || Sbjct: 26987854 cgtaacgccccttcaggtaggtgtgcttggttaaattctgaaaatattgctgttgcttaa 26987795 Query: 352 caagcttctcacgtgggtaaaatggngcctct 383 |||||||||||||| |||||| |||||| Sbjct: 26987794 acagcttctcacgtggcacaaatggtgcctct 26987763
>dbj|AP003822.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1316_A04 Length = 87144 Score = 89.7 bits (45), Expect = 7e-15 Identities = 125/152 (82%) Strand = Plus / Minus Query: 232 caatcatgaacaagctggagccagcaagcgcaaggggaatggcaacggagatgaccgcat 291 |||||||||||||||||| |||||| |||||||||||||||||||| || ||| | ||| Sbjct: 52392 caatcatgaacaagctggtgccagccagcgcaaggggaatggcaacagatgtgatcacat 52333 Query: 292 cgtaacggcctttaaggtggatatgcttgctcaagttctggaaatactgctgcttctgaa 351 ||||||| || || |||| | | |||||| | || ||||| ||||| ||||| | || || Sbjct: 52332 cgtaacgccccttcaggtaggtgtgcttggttaaattctgaaaatattgctgttgcttaa 52273 Query: 352 caagcttctcacgtgggtaaaatggngcctct 383 |||||||||||||| |||||| |||||| Sbjct: 52272 acagcttctcacgtggcacaaatggtgcctct 52241
>dbj|AP005455.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0503D09 Length = 144443 Score = 89.7 bits (45), Expect = 7e-15 Identities = 125/152 (82%) Strand = Plus / Minus Query: 232 caatcatgaacaagctggagccagcaagcgcaaggggaatggcaacggagatgaccgcat 291 |||||||||||||||||| |||||| |||||||||||||||||||| || ||| | ||| Sbjct: 136505 caatcatgaacaagctggtgccagccagcgcaaggggaatggcaacagatgtgatcacat 136446 Query: 292 cgtaacggcctttaaggtggatatgcttgctcaagttctggaaatactgctgcttctgaa 351 ||||||| || || |||| | | |||||| | || ||||| ||||| ||||| | || || Sbjct: 136445 cgtaacgccccttcaggtaggtgtgcttggttaaattctgaaaatattgctgttgcttaa 136386 Query: 352 caagcttctcacgtgggtaaaatggngcctct 383 |||||||||||||| |||||| |||||| Sbjct: 136385 acagcttctcacgtggcacaaatggtgcctct 136354
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 87.7 bits (44), Expect = 3e-14 Identities = 95/112 (84%) Strand = Plus / Plus Query: 234 atcatgaacaagctggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcg 293 ||||| |||||||||||| | ||||| || |||||||||||||||||| ||||| |||| Sbjct: 3345296 atcataaacaagctggaggcggcaagagcgaggggaatggcaacggaggtgaccacatca 3345355 Query: 294 taacggcctttaaggtggatatgcttgctcaagttctggaaatactgctgct 345 ||||| ||||| || | | |||||| |||||||||| ||||||||||||| Sbjct: 3345356 taacgccctttcagatacgtgtgcttggtcaagttctgaaaatactgctgct 3345407 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Plus Query: 184 ttcactcctttttcccgatcccgttagacatgttgtagatcccacg 229 |||||||||||||||||| || | |||||||||||| | |||||| Sbjct: 3345150 ttcactcctttttcccgactccatgagacatgttgtacaccccacg 3345195
>dbj|AP004126.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ9003_G05 Length = 141860 Score = 87.7 bits (44), Expect = 3e-14 Identities = 95/112 (84%) Strand = Plus / Plus Query: 234 atcatgaacaagctggagccagcaagcgcaaggggaatggcaacggagatgaccgcatcg 293 ||||| |||||||||||| | ||||| || |||||||||||||||||| ||||| |||| Sbjct: 94156 atcataaacaagctggaggcggcaagagcgaggggaatggcaacggaggtgaccacatca 94215 Query: 294 taacggcctttaaggtggatatgcttgctcaagttctggaaatactgctgct 345 ||||| ||||| || | | |||||| |||||||||| ||||||||||||| Sbjct: 94216 taacgccctttcagatacgtgtgcttggtcaagttctgaaaatactgctgct 94267 Score = 44.1 bits (22), Expect = 0.37 Identities = 40/46 (86%) Strand = Plus / Plus Query: 184 ttcactcctttttcccgatcccgttagacatgttgtagatcccacg 229 |||||||||||||||||| || | |||||||||||| | |||||| Sbjct: 94010 ttcactcctttttcccgactccatgagacatgttgtacaccccacg 94055
>gb|AC140206.2| Mus musculus BAC clone RP24-446O8 from chromosome 16, complete sequence Length = 195790 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 caacaaaacagcaactggcaa 72 ||||||||||||||||||||| Sbjct: 80714 caacaaaacagcaactggcaa 80734
>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome Length = 2572079 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 caaataccaacaaaacagca 64 |||||||||||||||||||| Sbjct: 1971042 caaataccaacaaaacagca 1971023
>gb|BC059331.1| Xenopus laevis hypothetical protein MGC69076, mRNA (cDNA clone MGC:69076 IMAGE:4968838), complete cds Length = 2626 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 acagcaactggcaaatgaac 78 |||||||||||||||||||| Sbjct: 1867 acagcaactggcaaatgaac 1886
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 aatattccacaaataccaacaaaa 59 ||||||| |||||||||||||||| Sbjct: 665393 aatattcgacaaataccaacaaaa 665416
>gb|J05100.1|SRAAFPG Sea raven (H.americanus) antifreeze protein type II gene, complete cds Length = 2420 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 cagaaattcactcctttttc 197 |||||||||||||||||||| Sbjct: 7 cagaaattcactcctttttc 26 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,189,476 Number of Sequences: 3902068 Number of extensions: 3189476 Number of successful extensions: 62403 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62297 Number of HSP's gapped (non-prelim): 102 length of query: 431 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 409 effective length of database: 17,147,199,772 effective search space: 7013204706748 effective search space used: 7013204706748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
