ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16h22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY110516.1| Zea mays CL4757_1 mRNA sequence Length = 955 Score = 192 bits (97), Expect = 1e-45 Identities = 223/265 (84%) Strand = Plus / Plus Query: 358 cttgatcgcctggtccagtgagaacaacgttgcaattggaagcaaatttccgagcgagca 417 |||| |||||||| |||| |||| | | |||||||| ||||| || || ||||| | || Sbjct: 334 cttggtcgcctgggccagcgagagcgatattgcaattcgaagcgaacttgcgagcaatca 393 Query: 418 taatcgcagcattcctatccctgtctgtctcgaaagctaaagtgtacgataggcctttcc 477 |||||||||||||||| ||||||||||| ||||| |||| |||||| || |||||||| Sbjct: 394 taatcgcagcattcctgtccctgtctgtttcgaaggctagagtgtaggacgagcctttcc 453 Query: 478 tagtttgccaaaagactgcacaggccgcagcattaccaccaccacggcttccacacagct 537 ||| ||||| || ||||| | || ||||||||||||||||||||||| || || | || Sbjct: 454 tagggtgccagaaaactgccctagctgcagcattaccaccaccacggctcccgcataact 513 Query: 538 tcatcgtggtggaatatgactcccttgcttttgtagaccttcctttccgaagctttactc 597 ||||||| |||||||| ||||| ||||||||||| |||| |||||| ||||| |||| || Sbjct: 514 tcatcgtagtggaatacgactctcttgcttttgtggaccatccttttcgaagttttattc 573 Query: 598 tcagctttccaatatgaaatacatg 622 ||||||||||||| ||||||||||| Sbjct: 574 tcagctttccaatgtgaaatacatg 598
>ref|NM_190984.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1482 Score = 172 bits (87), Expect = 9e-40 Identities = 201/239 (84%) Strand = Plus / Minus Query: 387 ttgcaattggaagcaaatttccgagcgagcataatcgcagcattcctatccctgtctgtc 446 |||||||| || |||||||| ||||| ||||| || || || |||||||||||||| || Sbjct: 1436 ttgcaatttgaggcaaatttacgagcaagcatgattgctgcgttcctatccctgtccgtt 1377 Query: 447 tcgaaagctaaagtgtacgataggcctttcctagtttgccaaaagactgcacaggccgca 506 || |||||||| ||||| || ||||||||||| | ||||| || ||||| || ||| Sbjct: 1376 tcaaaagctaaggtgtaggacaggcctttccttgcctgccagaaaactgccgtagctgca 1317 Query: 507 gcattaccaccaccacggcttccacacagcttcatcgtggtggaatatgactcccttgct 566 |||||||| ||||||||||| ||||||| |||||| ||||| || |||||||| |||||| Sbjct: 1316 gcattacccccaccacggctcccacacaacttcattgtggtcgagtatgactctcttgct 1257 Query: 567 tttgtagaccttcctttccgaagctttactctcagctttccaatatgaaatacatggac 625 |||||||||| |||||| |||||||||| ||||| ||||| ||||||||| ||||||| Sbjct: 1256 tttgtagaccatccttttcgaagctttattctcatttttccgatatgaaatgcatggac 1198
>dbj|AK101937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074F22, full insert sequence Length = 2151 Score = 172 bits (87), Expect = 9e-40 Identities = 201/239 (84%) Strand = Plus / Minus Query: 387 ttgcaattggaagcaaatttccgagcgagcataatcgcagcattcctatccctgtctgtc 446 |||||||| || |||||||| ||||| ||||| || || || |||||||||||||| || Sbjct: 1821 ttgcaatttgaggcaaatttacgagcaagcatgattgctgcgttcctatccctgtccgtt 1762 Query: 447 tcgaaagctaaagtgtacgataggcctttcctagtttgccaaaagactgcacaggccgca 506 || |||||||| ||||| || ||||||||||| | ||||| || ||||| || ||| Sbjct: 1761 tcaaaagctaaggtgtaggacaggcctttccttgcctgccagaaaactgccgtagctgca 1702 Query: 507 gcattaccaccaccacggcttccacacagcttcatcgtggtggaatatgactcccttgct 566 |||||||| ||||||||||| ||||||| |||||| ||||| || |||||||| |||||| Sbjct: 1701 gcattacccccaccacggctcccacacaacttcattgtggtcgagtatgactctcttgct 1642 Query: 567 tttgtagaccttcctttccgaagctttactctcagctttccaatatgaaatacatggac 625 |||||||||| |||||| |||||||||| ||||| ||||| ||||||||| ||||||| Sbjct: 1641 tttgtagaccatccttttcgaagctttattctcatttttccgatatgaaatgcatggac 1583 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 174 aacagctgcacgcaggcaaataaaaaga 201 ||||||||| ||||||||||||||||| Sbjct: 2028 aacagctgctggcaggcaaataaaaaga 2001
>dbj|AK069400.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011I15, full insert sequence Length = 2294 Score = 172 bits (87), Expect = 9e-40 Identities = 201/239 (84%) Strand = Plus / Minus Query: 387 ttgcaattggaagcaaatttccgagcgagcataatcgcagcattcctatccctgtctgtc 446 |||||||| || |||||||| ||||| ||||| || || || |||||||||||||| || Sbjct: 2001 ttgcaatttgaggcaaatttacgagcaagcatgattgctgcgttcctatccctgtccgtt 1942 Query: 447 tcgaaagctaaagtgtacgataggcctttcctagtttgccaaaagactgcacaggccgca 506 || |||||||| ||||| || ||||||||||| | ||||| || ||||| || ||| Sbjct: 1941 tcaaaagctaaggtgtaggacaggcctttccttgcctgccagaaaactgccgtagctgca 1882 Query: 507 gcattaccaccaccacggcttccacacagcttcatcgtggtggaatatgactcccttgct 566 |||||||| ||||||||||| ||||||| |||||| ||||| || |||||||| |||||| Sbjct: 1881 gcattacccccaccacggctcccacacaacttcattgtggtcgagtatgactctcttgct 1822 Query: 567 tttgtagaccttcctttccgaagctttactctcagctttccaatatgaaatacatggac 625 |||||||||| |||||| |||||||||| ||||| ||||| ||||||||| ||||||| Sbjct: 1821 tttgtagaccatccttttcgaagctttattctcatttttccgatatgaaatgcatggac 1763 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 174 aacagctgcacgcaggcaaataaaaaga 201 ||||||||| ||||||||||||||||| Sbjct: 2208 aacagctgctggcaggcaaataaaaaga 2181
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 536 cttcatcgtggtggaatatgactcccttgcttttgtagaccttcctttccgaagctttac 595 |||||| ||||| || |||||||| |||||||||||||||| |||||| |||||||||| Sbjct: 34147983 cttcattgtggtcgagtatgactctcttgcttttgtagaccatccttttcgaagctttat 34148042 Query: 596 tctcagctttccaatatgaaatacatggac 625 ||||| ||||| ||||||||| ||||||| Sbjct: 34148043 tctcatttttccgatatgaaatgcatggac 34148072 Score = 87.7 bits (44), Expect = 4e-14 Identities = 122/148 (82%) Strand = Plus / Plus Query: 387 ttgcaattggaagcaaatttccgagcgagcataatcgcagcattcctatccctgtctgtc 446 |||||||| || |||||||| ||||| ||||| || || || |||||||||||||| || Sbjct: 34147191 ttgcaatttgaggcaaatttacgagcaagcatgattgctgcgttcctatccctgtccgtt 34147250 Query: 447 tcgaaagctaaagtgtacgataggcctttcctagtttgccaaaagactgcacaggccgca 506 || |||||||| ||||| || ||||||||||| | ||||| || ||||| || ||| Sbjct: 34147251 tcaaaagctaaggtgtaggacaggcctttccttgcctgccagaaaactgccgtagctgca 34147310 Query: 507 gcattaccaccaccacggcttccacaca 534 |||||||| ||||||||||| ||||||| Sbjct: 34147311 gcattacccccaccacggctcccacaca 34147338 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 174 aacagctgcacgcaggcaaataaaaaga 201 ||||||||| ||||||||||||||||| Sbjct: 34146864 aacagctgctggcaggcaaataaaaaga 34146891
>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034E02 Length = 165497 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 536 cttcatcgtggtggaatatgactcccttgcttttgtagaccttcctttccgaagctttac 595 |||||| ||||| || |||||||| |||||||||||||||| |||||| |||||||||| Sbjct: 144461 cttcattgtggtcgagtatgactctcttgcttttgtagaccatccttttcgaagctttat 144520 Query: 596 tctcagctttccaatatgaaatacatggac 625 ||||| ||||| ||||||||| ||||||| Sbjct: 144521 tctcatttttccgatatgaaatgcatggac 144550 Score = 87.7 bits (44), Expect = 4e-14 Identities = 122/148 (82%) Strand = Plus / Plus Query: 387 ttgcaattggaagcaaatttccgagcgagcataatcgcagcattcctatccctgtctgtc 446 |||||||| || |||||||| ||||| ||||| || || || |||||||||||||| || Sbjct: 143669 ttgcaatttgaggcaaatttacgagcaagcatgattgctgcgttcctatccctgtccgtt 143728 Query: 447 tcgaaagctaaagtgtacgataggcctttcctagtttgccaaaagactgcacaggccgca 506 || |||||||| ||||| || ||||||||||| | ||||| || ||||| || ||| Sbjct: 143729 tcaaaagctaaggtgtaggacaggcctttccttgcctgccagaaaactgccgtagctgca 143788 Query: 507 gcattaccaccaccacggcttccacaca 534 |||||||| ||||||||||| ||||||| Sbjct: 143789 gcattacccccaccacggctcccacaca 143816 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 174 aacagctgcacgcaggcaaataaaaaga 201 ||||||||| ||||||||||||||||| Sbjct: 143342 aacagctgctggcaggcaaataaaaaga 143369
>gb|AC122831.2| Mus musculus BAC clone RP23-179B10 from 3, complete sequence Length = 204672 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 547 tggaatatgactcccttgctttt 569 ||||||||||||||||||||||| Sbjct: 71665 tggaatatgactcccttgctttt 71687
>gb|AC171110.2| Mus musculus BAC clone RP24-503L4 from chromosome 3, complete sequence Length = 207203 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 547 tggaatatgactcccttgctttt 569 ||||||||||||||||||||||| Sbjct: 180414 tggaatatgactcccttgctttt 180436
>gb|AC147375.3| Mus musculus BAC clone RP24-159O13 from chromosome 12, complete sequence Length = 176510 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 cctctttcctttttctctctca 107 |||||||||||||||||||||| Sbjct: 143318 cctctttcctttttctctctca 143339
>gb|AC126552.5| Mus musculus BAC clone RP23-342F3 from chromosome 15, complete sequence Length = 213862 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 81 aaaggcctctttcctttttctc 102 |||||||||||||||||||||| Sbjct: 178643 aaaggcctctttcctttttctc 178622
>gb|AC134826.4| Mus musculus BAC clone RP24-459P6 from chromosome 13, complete sequence Length = 168202 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 gcctctttcctttttctctct 105 ||||||||||||||||||||| Sbjct: 9916 gcctctttcctttttctctct 9896
>gb|AC126048.3| Mus musculus BAC clone RP23-207O12 from 3, complete sequence Length = 188665 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 600 agctttccaatatgaaatacatgga 624 |||| |||||||||||||||||||| Sbjct: 105522 agctctccaatatgaaatacatgga 105546
>emb|AL590434.16| Human DNA sequence from clone RP11-181E22 on chromosome 1 Contains the 3' end of the gene for a novel protein, a novel pseudogene, the SFPQ gene for splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated), the 5' end of the ZNF262 gene for zinc finger protein 262 and a CpG island, complete sequence Length = 185909 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 87 ctctttcctttttctctctcagctg 111 |||||||||||||||||||| |||| Sbjct: 33904 ctctttcctttttctctctctgctg 33928
>emb|AL591492.11| Zebrafish DNA sequence from clone BUSM1-261O22 in linkage group 20 Contains a novel gene similar to FKBP3 (FK506 binding protein 3), a novel gene for a protein similar to pre-mRNA processing proteins, a novel retrotransposon and two CpG islands, complete sequence Length = 92083 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 gcctctttcctttttctctct 105 ||||||||||||||||||||| Sbjct: 12041 gcctctttcctttttctctct 12021
>dbj|AB047519.1| Prunus persica PpExp3 mRNA for expansin, complete cds Length = 1340 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 ctctttcctttttctctctca 107 ||||||||||||||||||||| Sbjct: 48 ctctttcctttttctctctca 68
>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold Length = 1825024 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 tttcctttttctctctcagct 110 ||||||||||||||||||||| Sbjct: 1294065 tttcctttttctctctcagct 1294085
>gb|BC083774.1| Rattus norvegicus serologically defined colon cancer antigen 10, mRNA (cDNA clone MGC:94726 IMAGE:7193421), complete cds Length = 1852 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 ctttcctttttctctctcagc 109 ||||||||||||||||||||| Sbjct: 1460 ctttcctttttctctctcagc 1440
>gb|AC144688.3| Cercopithecus aethiops clone CH252-118C18, complete sequence Length = 128272 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 tttcctttttctctctcagct 110 ||||||||||||||||||||| Sbjct: 111735 tttcctttttctctctcagct 111755
>ref|NM_001013199.1| Rattus norvegicus serologically defined colon cancer antigen 10 (Sdccag10), mRNA Length = 1852 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 ctttcctttttctctctcagc 109 ||||||||||||||||||||| Sbjct: 1460 ctttcctttttctctctcagc 1440
>gb|AC129597.5| Mus musculus BAC clone RP23-262I17 from 13, complete sequence Length = 195537 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 gcctctttcctttttctctct 105 ||||||||||||||||||||| Sbjct: 170209 gcctctttcctttttctctct 170189
>emb|AL831794.6| Mouse DNA sequence from clone RP23-114B13 on chromosome 2, complete sequence Length = 223128 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 aaggcctctttcctttttctctctc 106 |||||||||| |||||||||||||| Sbjct: 87256 aaggcctcttccctttttctctctc 87280
>gb|AC123528.2| Oryza sativa chromosome 11 clone OSJNBa0078E03, complete sequence Length = 149493 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 caccacggcttccacacagc 536 |||||||||||||||||||| Sbjct: 71842 caccacggcttccacacagc 71861
>ref|XM_513713.1| PREDICTED: Pan troglodytes similar to FLJ00183 protein (LOC457195), mRNA Length = 1544 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 ctttttctctctcagctgtc 113 |||||||||||||||||||| Sbjct: 1107 ctttttctctctcagctgtc 1088
>gb|AC111033.11| Mus musculus chromosome 5, clone RP24-188E19, complete sequence Length = 175890 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ctctttcctttttctctctc 106 |||||||||||||||||||| Sbjct: 88125 ctctttcctttttctctctc 88106
>gb|AC162460.3| Mus musculus chromosome 5, clone RP24-247A21, complete sequence Length = 170006 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ctctttcctttttctctctc 106 |||||||||||||||||||| Sbjct: 129138 ctctttcctttttctctctc 129157
>gb|AC138376.11| Mus musculus chromosome 7, clone RP23-53O7, complete sequence Length = 247484 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ctctttcctttttctctctc 106 |||||||||||||||||||| Sbjct: 150887 ctctttcctttttctctctc 150906
>gb|AC024168.5| Homo sapiens chromosome 3 clone RP11-622P3 map 3p, complete sequence Length = 186276 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ctctttcctttttctctctc 106 |||||||||||||||||||| Sbjct: 82732 ctctttcctttttctctctc 82713
>gb|AC072063.5| Homo sapiens BAC clone RP11-697B15 from 7, complete sequence Length = 136286 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 79 taaaaggcctctttcctttttctc 102 ||||| |||||||||||||||||| Sbjct: 62673 taaaaagcctctttcctttttctc 62696
>gb|AC113299.14| Mus musculus chromosome 5, clone RP23-429P17, complete sequence Length = 214124 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tctctcagctgtcacgaata 120 |||||||||||||||||||| Sbjct: 144650 tctctcagctgtcacgaata 144631
>gb|AC034122.12| Mus musculus chromosome 1, clone RP23-169C19, complete sequence Length = 208469 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cctctttcctttttctctct 105 |||||||||||||||||||| Sbjct: 60039 cctctttcctttttctctct 60020
>emb|AL606465.21| Human DNA sequence from clone RP11-781D11 on chromosome 1 Contains a translation initiation factor SUI1 (SUI1) pseudogene, the gene for a novel protein (FLJ12666, FLJ44274), the NDUFS5 gene for 15kDA NADH dehydrogenase (ubiquinone) Fe-S protein 5 (NADH-coenzyme Q reductase) and a CpG island, complete sequence Length = 116103 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 596 tctcagctttccaatatgaa 615 |||||||||||||||||||| Sbjct: 52074 tctcagctttccaatatgaa 52093
>emb|AL137797.9| Human DNA sequence from clone RP5-1109J22 on chromosome 1 Contains three novel genes, the OTX3 gene for orthodenticle homolog 3 (Drosophila) and a CpG island, complete sequence Length = 105345 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 523 ggcttccacacagcttcatc 542 |||||||||||||||||||| Sbjct: 30243 ggcttccacacagcttcatc 30224
>emb|AL021393.1|HS747E2 Human DNA sequence from clone CTA-747E2 on chromosome 22q12.1, complete sequence Length = 109859 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ctctttcctttttctctctc 106 |||||||||||||||||||| Sbjct: 55160 ctctttcctttttctctctc 55179
>emb|BX470185.18| Zebrafish DNA sequence from clone CH211-222D3 in linkage group 3, complete sequence Length = 198900 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 tctttcctttttctctctca 107 |||||||||||||||||||| Sbjct: 25433 tctttcctttttctctctca 25452
>gb|AC002332.3| Arabidopsis thaliana chromosome 2 clone F4P9 map ve015, complete sequence Length = 152593 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 gtacaaacctcctaatctcacaaa 266 ||||| |||||||||||||||||| Sbjct: 83555 gtacacacctcctaatctcacaaa 83532
>ref|NM_015370.1| Homo sapiens hypothetical protein HS747E2A (HS747E2A), mRNA Length = 1070 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ctctttcctttttctctctc 106 |||||||||||||||||||| Sbjct: 67 ctctttcctttttctctctc 48
>gb|AF350939.1|AF350939 Prunus cerasus expansin (EXP4) mRNA, complete cds Length = 965 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 tctttcctttttctctctca 107 |||||||||||||||||||| Sbjct: 27 tctttcctttttctctctca 46
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 caccacggcttccacacagc 536 |||||||||||||||||||| Sbjct: 1716835 caccacggcttccacacagc 1716854
>gb|AC104698.2| Homo sapiens BAC clone RP11-517F1 from 2, complete sequence Length = 115170 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 gcctggtccagtgagaacaa 384 |||||||||||||||||||| Sbjct: 18608 gcctggtccagtgagaacaa 18627
>gb|AC012502.3|AC012502 Homo sapiens BAC clone RP11-461H6 from Y, complete sequence Length = 113799 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ctctttcctttttctctctc 106 |||||||||||||||||||| Sbjct: 67992 ctctttcctttttctctctc 67973
>gb|AC132808.2| Homo sapiens chromosome 3 clone RP11-794P9, complete sequence Length = 195741 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ctctttcctttttctctctc 106 |||||||||||||||||||| Sbjct: 102199 ctctttcctttttctctctc 102218
>emb|AL035364.1|HS747E2A H.sapiens novel gene from chromosome 22 Length = 1070 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ctctttcctttttctctctc 106 |||||||||||||||||||| Sbjct: 67 ctctttcctttttctctctc 48
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 485 ccaaaagactgcacaggccgcagc 508 ||||||||||||| |||||||||| Sbjct: 864072 ccaaaagactgcagaggccgcagc 864095
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 caccacggcttccacacagc 536 |||||||||||||||||||| Sbjct: 1714556 caccacggcttccacacagc 1714575
>ref|NG_000002.1| Homo sapiens immunoglobulin lambda locus (IGL@) on chromosome 22 Length = 909203 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cctctttcctttttctctct 105 |||||||||||||||||||| Sbjct: 797235 cctctttcctttttctctct 797216
>emb|AL663064.12| Mouse DNA sequence from clone RP23-12F1 on chromosome X, complete sequence Length = 220522 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 588 agctttactctcagctttcc 607 |||||||||||||||||||| Sbjct: 38435 agctttactctcagctttcc 38416
>gb|AC034198.7| Homo sapiens chromosome 3 clone RP11-767C1 map 3p, complete sequence Length = 169005 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cctctttcctttttctctct 105 |||||||||||||||||||| Sbjct: 148998 cctctttcctttttctctct 148979
>gb|AC079093.16| Homo sapiens chromosome 8, clone RP11-265H5, complete sequence Length = 141612 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ctctttcctttttctctctc 106 |||||||||||||||||||| Sbjct: 11334 ctctttcctttttctctctc 11353
>dbj|AP004195.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1434A12 Length = 151834 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ctctttcctttttctctctc 106 |||||||||||||||||||| Sbjct: 25603 ctctttcctttttctctctc 25622
>dbj|AP001205.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1083B1, complete sequence Length = 155731 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ctctttcctttttctctctc 106 |||||||||||||||||||| Sbjct: 138338 ctctttcctttttctctctc 138357
>dbj|D87021.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:84E4 Length = 36471 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cctctttcctttttctctct 105 |||||||||||||||||||| Sbjct: 31012 cctctttcctttttctctct 30993 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,767,847 Number of Sequences: 3902068 Number of extensions: 5767847 Number of successful extensions: 108302 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108068 Number of HSP's gapped (non-prelim): 229 length of query: 645 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 622 effective length of database: 17,143,297,704 effective search space: 10663131171888 effective search space used: 10663131171888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
