ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16h15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1M4K3_HUMAN (Q8IVH8) Mitogen-activated protein kinase kinase kina... 30 4.2
2META_VIBCH (Q9KRM5) Homoserine O-succinyltransferase (EC 2.3.1.4... 29 9.3

>M4K3_HUMAN (Q8IVH8) Mitogen-activated protein kinase kinase kinase kinase 3|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 3) (MEK
           kinase kinase 3) (MEKKK 3) (Germinal center
           kinase-related protein kinase) (GLK)
          Length = 894

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
 Frame = -3

Query: 140 HIHLCSSL-----LLRWMCKLQFLTLLPHIDSIIKFPC----XLVTPEQE 18
           H +LC +L     LL W+  +Q   L+ HID  I  P      LV PEQE
Sbjct: 685 HKYLCGALQTSIVLLEWVEPMQKFMLIKHIDFPIPCPLRMFEMLVVPEQE 734



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>META_VIBCH (Q9KRM5) Homoserine O-succinyltransferase (EC 2.3.1.46) (Homoserine|
           O-transsuccinylase) (HTS)
          Length = 313

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 347 HPPHIGVVLHGETIHTLREAVGTRVPIHCWPS 442
           HP +    LHGE +  L E +   +P++ +P+
Sbjct: 235 HPEYDAYTLHGEYVRDLGEGLNPAIPVNYYPN 266


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,230,682
Number of Sequences: 219361
Number of extensions: 1446571
Number of successful extensions: 3721
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3721
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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