ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GP116_RAT (Q9WVT0) Probable G-protein coupled receptor 116 precu... 29 5.9
2GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 pre... 29 5.9

>GP116_RAT (Q9WVT0) Probable G-protein coupled receptor 116 precursor (G-protein|
            coupled hepta-helical receptor Ig-hepta)
          Length = 1349

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 449  RRSSLGSATPELSTPKSYSSRYNRYFGDSRRLSVS 345
            + +SLGS+TP  S     S R+N  FG +   +VS
Sbjct: 1295 KSTSLGSSTPVFSMSSPISRRFNNLFGKTGTYNVS 1329



to top

>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 449  RRSSLGSATPELSTPKSYSSRYNRYFGDSRRLSVS 345
            + +SLGS+TP  S     S R+N  FG +   +VS
Sbjct: 1292 KSTSLGSSTPVFSMSSPISRRFNNLFGKTGTYNVS 1326


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,714,752
Number of Sequences: 219361
Number of extensions: 1061023
Number of successful extensions: 3551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3500
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top