>RRPL_RVFVZ (P27316) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)|
          Length = 2149

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
 Frame = -2

Query: 554  GAVWRNATTADVRWWSDGD-----AVRLCAATSSTVLQPGKANNVWAPWYQRPLSEY--- 399
            G VW  AT+ D R W+ G      A+ LC  TS            W P   R  S +   
Sbjct: 981  GPVWTCATSDDARKWNQGHFVTKFALMLCEFTSPK----------WWPLIIRGCSMFTKK 1030

Query: 398  --VWSLHARQLLYGGDELDLSGDILFILHGATHEAVE 294
              + +L+  ++L G  ELD+  D +  L  A H   E
Sbjct: 1031 RMMMNLNYLKILDGHRELDIRDDFVMDLFKAYHGEAE 1067

>ZAN_MOUSE (O88799) Zonadhesin precursor|
          Length = 5376

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
 Frame = -1

Query: 636  QACSSLV--------CNHRRCPERSQA*CMRNKCRGRSLEECHNSRCTVVVGWRRSTVMC 481
            QAC  LV        C+    PE  +  CM + C G   +E    RC V+ G+    ++C
Sbjct: 5074 QACRVLVDPQGPFAACHQIIAPEPFEQRCMLDMCTGWKTKEEEELRCRVLSGY---AIIC 5130

Query: 480  SNK-QHSTTTREGQQCMGTLVPTASLRVCMVSPC 382
                 + T  R+   C  T       + CM +PC
Sbjct: 5131 QEAGANMTGWRDHTHCAMTCPANTVYQRCM-TPC 5163

>ITB5_MOUSE (O70309) Integrin beta-5 precursor|
          Length = 798

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 22/77 (28%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
 Frame = -1

Query: 645 CQCQACSSLVCNHRRCP----ERSQA*CMRNK---CRGRSLEECHNSRCTVVVGWRRSTV 487
           C C  CS       R      E     C RNK   C G    ECH   C    G+     
Sbjct: 528 CSCNQCSCFESEFGRIYGPFCECDSFSCARNKGVLCSGHG--ECHCGECKCHAGYIGDNC 585

Query: 486 MCSNKQHSTTTREGQQC 436
            CS    +   ++GQ C
Sbjct: 586 NCSTDVSTCKAKDGQIC 602

>ITB5_PAPCY (Q07441) Integrin beta-5 (Fragment)|
          Length = 655

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 22/77 (28%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
 Frame = -1

Query: 645 CQCQACSSLVCNHRRCP----ERSQA*CMRNK---CRGRSLEECHNSRCTVVVGWRRSTV 487
           C C  CS       +      E     C RNK   C G    ECH   C    G+     
Sbjct: 384 CSCNQCSCFESEFGKIYGPFCECDNFSCARNKGVLCSGHG--ECHCGECKCHAGYIGDNC 441

Query: 486 MCSNKQHSTTTREGQQC 436
            CS    +   R+GQ C
Sbjct: 442 NCSTDISTCRGRDGQIC 458

>ITB5_HUMAN (P18084) Integrin beta-5 precursor|
          Length = 799

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 22/77 (28%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
 Frame = -1

Query: 645 CQCQACSSLVCNHRRCP----ERSQA*CMRNK---CRGRSLEECHNSRCTVVVGWRRSTV 487
           C C  CS       +      E     C RNK   C G    ECH   C    G+     
Sbjct: 528 CSCNQCSCFESEFGKIYGPFCECDNFSCARNKGVLCSGHG--ECHCGECKCHAGYIGDNC 585

Query: 486 MCSNKQHSTTTREGQQC 436
            CS    +   R+GQ C
Sbjct: 586 NCSTDISTCRGRDGQIC 602


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,429,277
Number of Sequences: 219361
Number of extensions: 1629661
Number of successful extensions: 5126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5109
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)