ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_188597.1| Oryza sativa (japonica cultivar-group), predic... 88 4e-14
2dbj|AK061937.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 4e-14
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
4dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
5dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
6dbj|AK106136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 4e-14
7dbj|AK071900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 4e-14
8dbj|AK066024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 4e-14
9gb|AY109727.1| Zea mays CL6736_1 mRNA sequence 72 3e-09
10ref|XM_676362.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 2.2
11gb|AC114574.8| Mus musculus chromosome 6, clone RP23-151F20, com... 42 2.2
12gb|AC073905.3| Homo sapiens BAC clone RP11-745H15 from 2, comple... 42 2.2
13gb|AC015916.13| Homo sapiens chromosome 17, clone CTD-2339F15, c... 42 2.2
14gb|AC154019.3| Mus musculus 6 BAC RP24-374A6 (Roswell Park Cance... 42 2.2
15ref|NM_121224.2| Arabidopsis thaliana unknown protein AT5G11860 ... 40 8.8
16ref|NM_180478.1| Arabidopsis thaliana unknown protein AT5G11860 ... 40 8.8
17ref|NM_203038.1| Arabidopsis thaliana unknown protein AT5G11860 ... 40 8.8
18gb|BT020406.1| Arabidopsis thaliana At5g11860 mRNA, complete cds 40 8.8
19gb|AC164646.3| Mus musculus BAC clone RP24-262I1 from chromosome... 40 8.8
20gb|AC118194.8| Mus musculus chromosome 3, clone RP23-464I9, comp... 40 8.8
21gb|BT011819.1| Arabidopsis thaliana At5g11860 mRNA sequence 40 8.8
22ref|XM_622964.3| PREDICTED: Mus musculus retinoic acid induced 2... 40 8.8
23ref|XM_386060.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 8.8
24gb|AC093447.17| Mus musculus strain 129/Sv clone ct7-25g12 map X... 40 8.8
25emb|AL163812.1|ATF14F18 Arabidopsis thaliana DNA chromosome 5, B... 40 8.8
26gb|AC093446.12| Mus musculus strain 129Sv/CJ7 clone ct7-201l18, ... 40 8.8
27emb|BX829896.1|CNS0A1JP Arabidopsis thaliana Full-length cDNA Co... 40 8.8
28gb|BT004237.1| Arabidopsis thaliana clone RAFL14-89-L14 (R20431) 40 8.8
29gb|AY085441.1| Arabidopsis thaliana clone 151766 mRNA, complete ... 40 8.8
30emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 8.8
31emb|AL732391.7| Mouse DNA sequence from clone RP23-364H13 on chr... 40 8.8

>ref|NM_188597.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 510

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                       
Query: 565 gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624
           ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | ||
Sbjct: 181 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 122

                           
Query: 625 actgcatgcctggcat 640
           | ||||| ||||||||
Sbjct: 121 attgcattcctggcat 106



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 376 tgtcttgcatggagagaccatacatactctgagagagg 413
           |||||||||||||||| ||||||||  |||| ||||||
Sbjct: 370 tgtcttgcatggagaggccatacattttctgggagagg 333



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 238 tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297
           |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || ||||
Sbjct: 502 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 443

            
Query: 298 a 298
           |
Sbjct: 442 a 442



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>dbj|AK061937.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-D06, full
            insert sequence
          Length = 1972

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                        
Query: 565  gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624
            ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | ||
Sbjct: 1500 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 1441

                            
Query: 625  actgcatgcctggcat 640
            | ||||| ||||||||
Sbjct: 1440 attgcattcctggcat 1425



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 376  tgtcttgcatggagagaccatacatactctgagagagg 413
            |||||||||||||||| ||||||||  |||| ||||||
Sbjct: 1689 tgtcttgcatggagaggccatacattttctgggagagg 1652



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 238  tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297
            |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || ||||
Sbjct: 1821 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 1762

             
Query: 298  a 298
            |
Sbjct: 1761 a 1761



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                           
Query: 565     gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624
               ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | ||
Sbjct: 7135698 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 7135639

                               
Query: 625     actgcatgcctggcat 640
               | ||||| ||||||||
Sbjct: 7135638 attgcattcctggcat 7135623



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 376     tgtcttgcatggagagaccatacatactctgagagagg 413
               |||||||||||||||| ||||||||  |||| ||||||
Sbjct: 7135887 tgtcttgcatggagaggccatacattttctgggagagg 7135850



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                           
Query: 238     tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297
               |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || ||||
Sbjct: 7136019 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 7135960

                
Query: 298     a 298
               |
Sbjct: 7135959 a 7135959



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>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485D09
          Length = 150594

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                         
Query: 565   gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624
             ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | ||
Sbjct: 30346 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 30287

                             
Query: 625   actgcatgcctggcat 640
             | ||||| ||||||||
Sbjct: 30286 attgcattcctggcat 30271



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 376   tgtcttgcatggagagaccatacatactctgagagagg 413
             |||||||||||||||| ||||||||  |||| ||||||
Sbjct: 30535 tgtcttgcatggagaggccatacattttctgggagagg 30498



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                         
Query: 238   tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297
             |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || ||||
Sbjct: 30667 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 30608

              
Query: 298   a 298
             |
Sbjct: 30607 a 30607



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>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0452F10
          Length = 145120

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                          
Query: 565    gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624
              ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | ||
Sbjct: 123278 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 123219

                              
Query: 625    actgcatgcctggcat 640
              | ||||| ||||||||
Sbjct: 123218 attgcattcctggcat 123203



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 376    tgtcttgcatggagagaccatacatactctgagagagg 413
              |||||||||||||||| ||||||||  |||| ||||||
Sbjct: 123467 tgtcttgcatggagaggccatacattttctgggagagg 123430



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                          
Query: 238    tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297
              |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || ||||
Sbjct: 123599 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 123540

               
Query: 298    a 298
              |
Sbjct: 123539 a 123539



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>dbj|AK106136.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G04, full
           insert sequence
          Length = 1173

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                       
Query: 565 gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624
           ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | ||
Sbjct: 676 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 617

                           
Query: 625 actgcatgcctggcat 640
           | ||||| ||||||||
Sbjct: 616 attgcattcctggcat 601



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 376 tgtcttgcatggagagaccatacatactctgagagagg 413
           |||||||||||||||| ||||||||  |||| ||||||
Sbjct: 865 tgtcttgcatggagaggccatacattttctgggagagg 828



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 238 tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297
           |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || ||||
Sbjct: 997 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 938

            
Query: 298 a 298
           |
Sbjct: 937 a 937



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>dbj|AK071900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057N07, full
           insert sequence
          Length = 1589

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                       
Query: 565 gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624
           ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | ||
Sbjct: 979 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 920

                           
Query: 625 actgcatgcctggcat 640
           | ||||| ||||||||
Sbjct: 919 attgcattcctggcat 904



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 376  tgtcttgcatggagagaccatacatactctgagagagg 413
            |||||||||||||||| ||||||||  |||| ||||||
Sbjct: 1168 tgtcttgcatggagaggccatacattttctgggagagg 1131



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 238  tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297
            |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || ||||
Sbjct: 1300 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 1241

             
Query: 298  a 298
            |
Sbjct: 1240 a 1240



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>dbj|AK066024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047G02, full
            insert sequence
          Length = 2599

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                        
Query: 565  gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624
            ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | ||
Sbjct: 1969 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 1910

                            
Query: 625  actgcatgcctggcat 640
            | ||||| ||||||||
Sbjct: 1909 attgcattcctggcat 1894



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 376  tgtcttgcatggagagaccatacatactctgagagagg 413
            |||||||||||||||| ||||||||  |||| ||||||
Sbjct: 2158 tgtcttgcatggagaggccatacattttctgggagagg 2121



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 238  tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297
            |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || ||||
Sbjct: 2290 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 2231

             
Query: 298  a 298
            |
Sbjct: 2230 a 2230



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>gb|AY109727.1| Zea mays CL6736_1 mRNA sequence
          Length = 961

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                       
Query: 245 cttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcgacggcct 304
           |||||||||||| ||||| || ||||||||||| |||||||| ||||| |||| |||| |
Sbjct: 687 cttcgtcttggcaatgctcaggaggtcaccgaaaagcttgtcttcgggcttcgtcggctt 628

                               
Query: 305 catgggttgcgccatggagg 324
           ||| |||||| || ||||||
Sbjct: 627 cataggttgccccgtggagg 608



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 534 ggcattcctccaaactgcgcccccggcatttgttgcgcatacatcatgcctggctgcgct 593
           |||||| ||||| |||| ||| | | |||||||||||  ||||||||| ||||||||| |
Sbjct: 407 ggcattgctccatactgggccactgccatttgttgcgggtacatcatgactggctgcgat 348

              
Query: 594 ccg 596
           |||
Sbjct: 347 ccg 345



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>ref|XM_676362.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8185.2), mRNA
          Length = 5100

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 323  ggatgaagaggatgtcgcctg 343
            |||||||||||||||||||||
Sbjct: 4711 ggatgaagaggatgtcgcctg 4691



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>gb|AC114574.8| Mus musculus chromosome 6, clone RP23-151F20, complete sequence
          Length = 252723

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 562    tttgttgcgcatacatcatgcctggctgc 590
              |||||||| ||||||||||| ||||||||
Sbjct: 208851 tttgttgctcatacatcatgactggctgc 208879



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 562    tttgttgcgcatacatcatgcctggctgc 590
              |||||||| ||||||||||| ||||||||
Sbjct: 206851 tttgttgctcatacatcatgactggctgc 206823



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>gb|AC073905.3| Homo sapiens BAC clone RP11-745H15 from 2, complete sequence
          Length = 111560

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 530  ttgtggcattcctccaaactg 550
            |||||||||||||||||||||
Sbjct: 9062 ttgtggcattcctccaaactg 9082



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>gb|AC015916.13| Homo sapiens chromosome 17, clone CTD-2339F15, complete sequence
          Length = 102564

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 451   cctggttgtagtactgtgctg 471
             |||||||||||||||||||||
Sbjct: 24282 cctggttgtagtactgtgctg 24262



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>gb|AC154019.3| Mus musculus 6 BAC RP24-374A6 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 169229

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 562    tttgttgcgcatacatcatgcctggctgc 590
              |||||||| ||||||||||| ||||||||
Sbjct: 165376 tttgttgctcatacatcatgactggctgc 165404



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 562    tttgttgcgcatacatcatgcctggctgc 590
              |||||||| ||||||||||| ||||||||
Sbjct: 163376 tttgttgctcatacatcatgactggctgc 163348



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>ref|NM_121224.2| Arabidopsis thaliana unknown protein AT5G11860 transcript variant
           AT5G11860.1 mRNA, complete cds
          Length = 1429

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 catggaggatgaagaggatg 336
           ||||||||||||||||||||
Sbjct: 488 catggaggatgaagaggatg 507



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>ref|NM_180478.1| Arabidopsis thaliana unknown protein AT5G11860 transcript variant
           AT5G11860.2 mRNA, complete cds
          Length = 1420

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 catggaggatgaagaggatg 336
           ||||||||||||||||||||
Sbjct: 479 catggaggatgaagaggatg 498



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>ref|NM_203038.1| Arabidopsis thaliana unknown protein AT5G11860 transcript variant
           AT5G11860.3 mRNA, complete cds
          Length = 1314

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 catggaggatgaagaggatg 336
           ||||||||||||||||||||
Sbjct: 373 catggaggatgaagaggatg 392



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>gb|BT020406.1| Arabidopsis thaliana At5g11860 mRNA, complete cds
          Length = 918

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 catggaggatgaagaggatg 336
           ||||||||||||||||||||
Sbjct: 198 catggaggatgaagaggatg 217



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>gb|AC164646.3| Mus musculus BAC clone RP24-262I1 from chromosome 3, complete sequence
          Length = 175326

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   aaatatatattggacctctt 207
             ||||||||||||||||||||
Sbjct: 82516 aaatatatattggacctctt 82497



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>gb|AC118194.8| Mus musculus chromosome 3, clone RP23-464I9, complete sequence
          Length = 180205

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    aaatatatattggacctctt 207
              ||||||||||||||||||||
Sbjct: 171739 aaatatatattggacctctt 171720



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>gb|BT011819.1| Arabidopsis thaliana At5g11860 mRNA sequence
          Length = 918

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 catggaggatgaagaggatg 336
           ||||||||||||||||||||
Sbjct: 195 catggaggatgaagaggatg 214



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>ref|XM_622964.3| PREDICTED: Mus musculus retinoic acid induced 2 (Rai2), mRNA
          Length = 2331

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 388  agagaccatacatactctga 407
            ||||||||||||||||||||
Sbjct: 2149 agagaccatacatactctga 2130



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>ref|XM_386060.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05884.1)
            partial mRNA
          Length = 3990

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 317  catggaggatgaagaggatg 336
            ||||||||||||||||||||
Sbjct: 1119 catggaggatgaagaggatg 1138



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>gb|AC093447.17| Mus musculus strain 129/Sv clone ct7-25g12 map X, complete sequence
          Length = 188211

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 388  agagaccatacatactctga 407
            ||||||||||||||||||||
Sbjct: 4165 agagaccatacatactctga 4146



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>emb|AL163812.1|ATF14F18 Arabidopsis thaliana DNA chromosome 5, BAC clone F14F18 (ESSA project)
          Length = 103638

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   catggaggatgaagaggatg 336
             ||||||||||||||||||||
Sbjct: 17739 catggaggatgaagaggatg 17720



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>gb|AC093446.12| Mus musculus strain 129Sv/CJ7 clone ct7-201l18, complete sequence
          Length = 89913

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 388   agagaccatacatactctga 407
             ||||||||||||||||||||
Sbjct: 56089 agagaccatacatactctga 56108



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>emb|BX829896.1|CNS0A1JP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB44ZE06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1333

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 catggaggatgaagaggatg 336
           ||||||||||||||||||||
Sbjct: 472 catggaggatgaagaggatg 491



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>gb|BT004237.1| Arabidopsis thaliana clone RAFL14-89-L14 (R20431)
          Length = 2224

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 317  catggaggatgaagaggatg 336
            ||||||||||||||||||||
Sbjct: 1267 catggaggatgaagaggatg 1286



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>gb|AY085441.1| Arabidopsis thaliana clone 151766 mRNA, complete sequence
          Length = 1315

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 catggaggatgaagaggatg 336
           ||||||||||||||||||||
Sbjct: 374 catggaggatgaagaggatg 393



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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    cactttcactccgtcatatc 228
              ||||||||||||||||||||
Sbjct: 326198 cactttcactccgtcatatc 326217



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>emb|AL732391.7| Mouse DNA sequence from clone RP23-364H13 on chromosome X, complete
             sequence
          Length = 173841

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   agagaccatacatactctga 407
             ||||||||||||||||||||
Sbjct: 32124 agagaccatacatactctga 32105


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,147,200
Number of Sequences: 3902068
Number of extensions: 4147200
Number of successful extensions: 73643
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73539
Number of HSP's gapped (non-prelim): 104
length of query: 648
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 625
effective length of database: 17,143,297,704
effective search space: 10714561065000
effective search space used: 10714561065000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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