Clone Name | rbasd16h04 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_188597.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 510 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 565 gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624 ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | || Sbjct: 181 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 122 Query: 625 actgcatgcctggcat 640 | ||||| |||||||| Sbjct: 121 attgcattcctggcat 106 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 376 tgtcttgcatggagagaccatacatactctgagagagg 413 |||||||||||||||| |||||||| |||| |||||| Sbjct: 370 tgtcttgcatggagaggccatacattttctgggagagg 333 Score = 42.1 bits (21), Expect = 2.2 Identities = 51/61 (83%) Strand = Plus / Minus Query: 238 tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297 |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || |||| Sbjct: 502 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 443 Query: 298 a 298 | Sbjct: 442 a 442
>dbj|AK061937.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-D06, full insert sequence Length = 1972 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 565 gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624 ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | || Sbjct: 1500 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 1441 Query: 625 actgcatgcctggcat 640 | ||||| |||||||| Sbjct: 1440 attgcattcctggcat 1425 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 376 tgtcttgcatggagagaccatacatactctgagagagg 413 |||||||||||||||| |||||||| |||| |||||| Sbjct: 1689 tgtcttgcatggagaggccatacattttctgggagagg 1652 Score = 42.1 bits (21), Expect = 2.2 Identities = 51/61 (83%) Strand = Plus / Minus Query: 238 tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297 |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || |||| Sbjct: 1821 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 1762 Query: 298 a 298 | Sbjct: 1761 a 1761
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 565 gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624 ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | || Sbjct: 7135698 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 7135639 Query: 625 actgcatgcctggcat 640 | ||||| |||||||| Sbjct: 7135638 attgcattcctggcat 7135623 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 376 tgtcttgcatggagagaccatacatactctgagagagg 413 |||||||||||||||| |||||||| |||| |||||| Sbjct: 7135887 tgtcttgcatggagaggccatacattttctgggagagg 7135850 Score = 42.1 bits (21), Expect = 2.2 Identities = 51/61 (83%) Strand = Plus / Minus Query: 238 tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297 |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || |||| Sbjct: 7136019 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 7135960 Query: 298 a 298 | Sbjct: 7135959 a 7135959
>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485D09 Length = 150594 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 565 gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624 ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | || Sbjct: 30346 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 30287 Query: 625 actgcatgcctggcat 640 | ||||| |||||||| Sbjct: 30286 attgcattcctggcat 30271 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 376 tgtcttgcatggagagaccatacatactctgagagagg 413 |||||||||||||||| |||||||| |||| |||||| Sbjct: 30535 tgtcttgcatggagaggccatacattttctgggagagg 30498 Score = 42.1 bits (21), Expect = 2.2 Identities = 51/61 (83%) Strand = Plus / Minus Query: 238 tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297 |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || |||| Sbjct: 30667 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 30608 Query: 298 a 298 | Sbjct: 30607 a 30607
>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0452F10 Length = 145120 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 565 gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624 ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | || Sbjct: 123278 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 123219 Query: 625 actgcatgcctggcat 640 | ||||| |||||||| Sbjct: 123218 attgcattcctggcat 123203 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 376 tgtcttgcatggagagaccatacatactctgagagagg 413 |||||||||||||||| |||||||| |||| |||||| Sbjct: 123467 tgtcttgcatggagaggccatacattttctgggagagg 123430 Score = 42.1 bits (21), Expect = 2.2 Identities = 51/61 (83%) Strand = Plus / Minus Query: 238 tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297 |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || |||| Sbjct: 123599 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 123540 Query: 298 a 298 | Sbjct: 123539 a 123539
>dbj|AK106136.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G04, full insert sequence Length = 1173 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 565 gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624 ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | || Sbjct: 676 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 617 Query: 625 actgcatgcctggcat 640 | ||||| |||||||| Sbjct: 616 attgcattcctggcat 601 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 376 tgtcttgcatggagagaccatacatactctgagagagg 413 |||||||||||||||| |||||||| |||| |||||| Sbjct: 865 tgtcttgcatggagaggccatacattttctgggagagg 828 Score = 42.1 bits (21), Expect = 2.2 Identities = 51/61 (83%) Strand = Plus / Minus Query: 238 tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297 |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || |||| Sbjct: 997 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 938 Query: 298 a 298 | Sbjct: 937 a 937
>dbj|AK071900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057N07, full insert sequence Length = 1589 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 565 gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624 ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | || Sbjct: 979 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 920 Query: 625 actgcatgcctggcat 640 | ||||| |||||||| Sbjct: 919 attgcattcctggcat 904 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 376 tgtcttgcatggagagaccatacatactctgagagagg 413 |||||||||||||||| |||||||| |||| |||||| Sbjct: 1168 tgtcttgcatggagaggccatacattttctgggagagg 1131 Score = 42.1 bits (21), Expect = 2.2 Identities = 51/61 (83%) Strand = Plus / Minus Query: 238 tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297 |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || |||| Sbjct: 1300 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 1241 Query: 298 a 298 | Sbjct: 1240 a 1240
>dbj|AK066024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047G02, full insert sequence Length = 2599 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 565 gttgcgcatacatcatgcctggctgcgctccgggcatcggcgatggttgcataccagtga 624 ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| || | || Sbjct: 1969 gttgcgcatacatcatgactggctgcgctcctggcatcggcgaaggttgcatcccgggga 1910 Query: 625 actgcatgcctggcat 640 | ||||| |||||||| Sbjct: 1909 attgcattcctggcat 1894 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 376 tgtcttgcatggagagaccatacatactctgagagagg 413 |||||||||||||||| |||||||| |||| |||||| Sbjct: 2158 tgtcttgcatggagaggccatacattttctgggagagg 2121 Score = 42.1 bits (21), Expect = 2.2 Identities = 51/61 (83%) Strand = Plus / Minus Query: 238 tgttctgcttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcg 297 |||||||||| || ||||| ||||| ||||| || || || ||||||||||| || |||| Sbjct: 2290 tgttctgctttgttttggcaatgctaagaagatctccaaacagcttgtcctcaggcttcg 2231 Query: 298 a 298 | Sbjct: 2230 a 2230
>gb|AY109727.1| Zea mays CL6736_1 mRNA sequence Length = 961 Score = 71.9 bits (36), Expect = 3e-09 Identities = 69/80 (86%) Strand = Plus / Minus Query: 245 cttcgtcttggcgatgctgagaaggtcaccgaagagcttgtcctcgggtttcgacggcct 304 |||||||||||| ||||| || ||||||||||| |||||||| ||||| |||| |||| | Sbjct: 687 cttcgtcttggcaatgctcaggaggtcaccgaaaagcttgtcttcgggcttcgtcggctt 628 Query: 305 catgggttgcgccatggagg 324 ||| |||||| || |||||| Sbjct: 627 cataggttgccccgtggagg 608 Score = 46.1 bits (23), Expect = 0.14 Identities = 53/63 (84%) Strand = Plus / Minus Query: 534 ggcattcctccaaactgcgcccccggcatttgttgcgcatacatcatgcctggctgcgct 593 |||||| ||||| |||| ||| | | ||||||||||| ||||||||| ||||||||| | Sbjct: 407 ggcattgctccatactgggccactgccatttgttgcgggtacatcatgactggctgcgat 348 Query: 594 ccg 596 ||| Sbjct: 347 ccg 345
>ref|XM_676362.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8185.2), mRNA Length = 5100 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 ggatgaagaggatgtcgcctg 343 ||||||||||||||||||||| Sbjct: 4711 ggatgaagaggatgtcgcctg 4691
>gb|AC114574.8| Mus musculus chromosome 6, clone RP23-151F20, complete sequence Length = 252723 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 562 tttgttgcgcatacatcatgcctggctgc 590 |||||||| ||||||||||| |||||||| Sbjct: 208851 tttgttgctcatacatcatgactggctgc 208879 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 562 tttgttgcgcatacatcatgcctggctgc 590 |||||||| ||||||||||| |||||||| Sbjct: 206851 tttgttgctcatacatcatgactggctgc 206823
>gb|AC073905.3| Homo sapiens BAC clone RP11-745H15 from 2, complete sequence Length = 111560 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 530 ttgtggcattcctccaaactg 550 ||||||||||||||||||||| Sbjct: 9062 ttgtggcattcctccaaactg 9082
>gb|AC015916.13| Homo sapiens chromosome 17, clone CTD-2339F15, complete sequence Length = 102564 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 cctggttgtagtactgtgctg 471 ||||||||||||||||||||| Sbjct: 24282 cctggttgtagtactgtgctg 24262
>gb|AC154019.3| Mus musculus 6 BAC RP24-374A6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 169229 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 562 tttgttgcgcatacatcatgcctggctgc 590 |||||||| ||||||||||| |||||||| Sbjct: 165376 tttgttgctcatacatcatgactggctgc 165404 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 562 tttgttgcgcatacatcatgcctggctgc 590 |||||||| ||||||||||| |||||||| Sbjct: 163376 tttgttgctcatacatcatgactggctgc 163348
>ref|NM_121224.2| Arabidopsis thaliana unknown protein AT5G11860 transcript variant AT5G11860.1 mRNA, complete cds Length = 1429 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 catggaggatgaagaggatg 336 |||||||||||||||||||| Sbjct: 488 catggaggatgaagaggatg 507
>ref|NM_180478.1| Arabidopsis thaliana unknown protein AT5G11860 transcript variant AT5G11860.2 mRNA, complete cds Length = 1420 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 catggaggatgaagaggatg 336 |||||||||||||||||||| Sbjct: 479 catggaggatgaagaggatg 498
>ref|NM_203038.1| Arabidopsis thaliana unknown protein AT5G11860 transcript variant AT5G11860.3 mRNA, complete cds Length = 1314 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 catggaggatgaagaggatg 336 |||||||||||||||||||| Sbjct: 373 catggaggatgaagaggatg 392
>gb|BT020406.1| Arabidopsis thaliana At5g11860 mRNA, complete cds Length = 918 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 catggaggatgaagaggatg 336 |||||||||||||||||||| Sbjct: 198 catggaggatgaagaggatg 217
>gb|AC164646.3| Mus musculus BAC clone RP24-262I1 from chromosome 3, complete sequence Length = 175326 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aaatatatattggacctctt 207 |||||||||||||||||||| Sbjct: 82516 aaatatatattggacctctt 82497
>gb|AC118194.8| Mus musculus chromosome 3, clone RP23-464I9, complete sequence Length = 180205 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 aaatatatattggacctctt 207 |||||||||||||||||||| Sbjct: 171739 aaatatatattggacctctt 171720
>gb|BT011819.1| Arabidopsis thaliana At5g11860 mRNA sequence Length = 918 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 catggaggatgaagaggatg 336 |||||||||||||||||||| Sbjct: 195 catggaggatgaagaggatg 214
>ref|XM_622964.3| PREDICTED: Mus musculus retinoic acid induced 2 (Rai2), mRNA Length = 2331 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 agagaccatacatactctga 407 |||||||||||||||||||| Sbjct: 2149 agagaccatacatactctga 2130
>ref|XM_386060.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05884.1) partial mRNA Length = 3990 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 catggaggatgaagaggatg 336 |||||||||||||||||||| Sbjct: 1119 catggaggatgaagaggatg 1138
>gb|AC093447.17| Mus musculus strain 129/Sv clone ct7-25g12 map X, complete sequence Length = 188211 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 agagaccatacatactctga 407 |||||||||||||||||||| Sbjct: 4165 agagaccatacatactctga 4146
>emb|AL163812.1|ATF14F18 Arabidopsis thaliana DNA chromosome 5, BAC clone F14F18 (ESSA project) Length = 103638 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 catggaggatgaagaggatg 336 |||||||||||||||||||| Sbjct: 17739 catggaggatgaagaggatg 17720
>gb|AC093446.12| Mus musculus strain 129Sv/CJ7 clone ct7-201l18, complete sequence Length = 89913 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 agagaccatacatactctga 407 |||||||||||||||||||| Sbjct: 56089 agagaccatacatactctga 56108
>emb|BX829896.1|CNS0A1JP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB44ZE06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1333 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 catggaggatgaagaggatg 336 |||||||||||||||||||| Sbjct: 472 catggaggatgaagaggatg 491
>gb|BT004237.1| Arabidopsis thaliana clone RAFL14-89-L14 (R20431) Length = 2224 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 catggaggatgaagaggatg 336 |||||||||||||||||||| Sbjct: 1267 catggaggatgaagaggatg 1286
>gb|AY085441.1| Arabidopsis thaliana clone 151766 mRNA, complete sequence Length = 1315 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 catggaggatgaagaggatg 336 |||||||||||||||||||| Sbjct: 374 catggaggatgaagaggatg 393
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cactttcactccgtcatatc 228 |||||||||||||||||||| Sbjct: 326198 cactttcactccgtcatatc 326217
>emb|AL732391.7| Mouse DNA sequence from clone RP23-364H13 on chromosome X, complete sequence Length = 173841 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 agagaccatacatactctga 407 |||||||||||||||||||| Sbjct: 32124 agagaccatacatactctga 32105 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,147,200 Number of Sequences: 3902068 Number of extensions: 4147200 Number of successful extensions: 73643 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73539 Number of HSP's gapped (non-prelim): 104 length of query: 648 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 625 effective length of database: 17,143,297,704 effective search space: 10714561065000 effective search space used: 10714561065000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)