ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK070625.1| Oryza sativa (japonica cultivar-group) cDNA clon... 333 4e-88
2ref|XM_473973.1| Oryza sativa (japonica cultivar-group), predic... 208 2e-50
3emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4,... 202 1e-48
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 202 1e-48
5gb|AC145218.29| Medicago truncatula clone mth2-34l18, complete s... 42 2.3
6gb|AC102535.17| Mus musculus chromosome 7, clone RP23-61O11, com... 40 9.0
7gb|AC110261.25| Mus musculus chromosome 1, clone RP23-289I3, com... 40 9.0
8gb|AC158612.7| Mus musculus 10 BAC RP23-39I3 (Roswell Park Cance... 40 9.0
9gb|AC158603.6| Mus musculus 10 BAC RP24-466C12 (Roswell Park Can... 40 9.0
10gb|AC141893.4| Mus musculus BAC clone RP23-324F17 from chromosom... 40 9.0
11emb|CT009719.10| Mouse DNA sequence from clone RP23-65P17 on chr... 40 9.0
12ref|XM_748508.1| Aspergillus fumigatus Af293 nitrate reductase (... 40 9.0
13gb|AC125541.4| Mus musculus BAC clone RP23-237I10 from chromosom... 40 9.0
14emb|AL358033.15| Human DNA sequence from clone RP11-657A9 on chr... 40 9.0
15emb|AL669816.3| Mouse DNA sequence from clone RP23-266C4 on chro... 40 9.0
16ref|NM_073252.2| Caenorhabditis elegans B0024.11 (B0024.11) mRNA... 40 9.0
17gb|AC093806.2| Homo sapiens BAC clone RP11-327P24 from 2, comple... 40 9.0
18emb|BX001055.11| Zebrafish DNA sequence from clone CH211-87M5 in... 40 9.0
19emb|BX276095.7| Zebrafish DNA sequence from clone CH211-225H17, ... 40 9.0
20gb|AC153874.4| Mus musculus 10 BAC RP23-250K15 (Roswell Park Can... 40 9.0
21emb|Z71178.1|CEB0024 Caenorhabditis elegans Cosmid B0024, comple... 40 9.0
22gb|AC151580.2| Mus musculus BAC clone RP23-65L6 from 18, complet... 40 9.0

>dbj|AK070625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055D06, full
            insert sequence
          Length = 2165

 Score =  333 bits (168), Expect = 4e-88
 Identities = 282/320 (88%)
 Strand = Plus / Minus

                                                                        
Query: 326  ggtggacctttctgttctgctaaaaggtaaaacggaatgtgagctaccatcttggttgct 385
            |||| |||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||| ||
Sbjct: 1723 ggtgcacctttttgttcagctaacaggtagaacggaatgtgagctaccatctttgttcct 1664

                                                                        
Query: 386  ccttcgctccagttcacaatcccaggaccatttccttgggcagtggatggtcccagtaca 445
            ||||| |||||||| ||||| ||||||||||||||||| || ||||||||||| ||||||
Sbjct: 1663 ccttcactccagttgacaataccaggaccatttccttgtgcggtggatggtcctagtaca 1604

                                                                        
Query: 446  gacaaacaaatggctggttcattcatgagccctaaatagtcacaggcgcgctgccagact 505
            || ||||||||||| ||||||||||  || |||||||||||||| || || ||||| |||
Sbjct: 1603 gataaacaaatggccggttcattcaatagacctaaatagtcacaagcacgttgccacact 1544

                                                                        
Query: 506  cgcctgtctgaggtcctggaccgagcgaccttagccaatgatacacgtgctcttggaagc 565
            | |||||| ||||| | ||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 1543 ctcctgtccgaggttcgggaacgagcgaccttggccaatgatacacgtgctcttggaagc 1484

                                                                        
Query: 566  agctcgttatggcatgttgctagcttcgcaatggcagtcaccacaaagcagaggagccga 625
            | ||| |||||| | ||||||||||| || |||||||||||||||||||||||||||| |
Sbjct: 1483 aactcattatggaacgttgctagctttgctatggcagtcaccacaaagcagaggagccta 1424

                                
Query: 626  gcttgggacgactttctaga 645
            ||||| || || ||||||||
Sbjct: 1423 gcttgagatgattttctaga 1404



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>ref|XM_473973.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1665

 Score =  208 bits (105), Expect = 2e-50
 Identities = 186/213 (87%)
 Strand = Plus / Minus

                                                                        
Query: 326  ggtggacctttctgttctgctaaaaggtaaaacggaatgtgagctaccatcttggttgct 385
            |||| |||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||| ||
Sbjct: 1622 ggtgcacctttttgttcagctaacaggtagaacggaatgtgagctaccatctttgttcct 1563

                                                                        
Query: 386  ccttcgctccagttcacaatcccaggaccatttccttgggcagtggatggtcccagtaca 445
            ||||| |||||||| ||||| ||||||||||||||||| || ||||||||||| ||||||
Sbjct: 1562 ccttcactccagttgacaataccaggaccatttccttgtgcggtggatggtcctagtaca 1503

                                                                        
Query: 446  gacaaacaaatggctggttcattcatgagccctaaatagtcacaggcgcgctgccagact 505
            || ||||||||||| ||||||||||  || |||||||||||||| || || ||||| |||
Sbjct: 1502 gataaacaaatggccggttcattcaatagacctaaatagtcacaagcacgttgccacact 1443

                                             
Query: 506  cgcctgtctgaggtcctggaccgagcgacctta 538
            | |||||| ||||| | ||| ||||||||||||
Sbjct: 1442 ctcctgtccgaggttcgggaacgagcgacctta 1410



 Score =  137 bits (69), Expect = 5e-29
 Identities = 102/113 (90%)
 Strand = Plus / Minus

                                                                        
Query: 533  accttagccaatgatacacgtgctcttggaagcagctcgttatggcatgttgctagcttc 592
            ||||| |||||||||||||||||||||||||||| ||| |||||| | ||||||||||| 
Sbjct: 1379 accttggccaatgatacacgtgctcttggaagcaactcattatggaacgttgctagcttt 1320

                                                                 
Query: 593  gcaatggcagtcaccacaaagcagaggagccgagcttgggacgactttctaga 645
            || |||||||||||||||||||||||||||| |||||| || || ||||||||
Sbjct: 1319 gctatggcagtcaccacaaagcagaggagcctagcttgagatgattttctaga 1267



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>emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060E08,
              complete sequence
          Length = 166951

 Score =  202 bits (102), Expect = 1e-48
 Identities = 180/206 (87%)
 Strand = Plus / Minus

                                                                          
Query: 331    acctttctgttctgctaaaaggtaaaacggaatgtgagctaccatcttggttgctccttc 390
              |||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||| |||||||
Sbjct: 106275 acctttttgttcagctaacaggtagaacggaatgtgagctaccatctttgttcctccttc 106216

                                                                          
Query: 391    gctccagttcacaatcccaggaccatttccttgggcagtggatggtcccagtacagacaa 450
               |||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||| ||
Sbjct: 106215 actccagttgacaataccaggaccatttccttgtgcggtggatggtcctagtacagataa 106156

                                                                          
Query: 451    acaaatggctggttcattcatgagccctaaatagtcacaggcgcgctgccagactcgcct 510
              ||||||||| ||||||||||  || |||||||||||||| || || ||||| |||| |||
Sbjct: 106155 acaaatggccggttcattcaatagacctaaatagtcacaagcacgttgccacactctcct 106096

                                        
Query: 511    gtctgaggtcctggaccgagcgacct 536
              ||| ||||| | ||| ||||||||||
Sbjct: 106095 gtccgaggttcgggaacgagcgacct 106070



 Score =  137 bits (69), Expect = 5e-29
 Identities = 102/113 (90%)
 Strand = Plus / Minus

                                                                          
Query: 533    accttagccaatgatacacgtgctcttggaagcagctcgttatggcatgttgctagcttc 592
              ||||| |||||||||||||||||||||||||||| ||| |||||| | ||||||||||| 
Sbjct: 105974 accttggccaatgatacacgtgctcttggaagcaactcattatggaacgttgctagcttt 105915

                                                                   
Query: 593    gcaatggcagtcaccacaaagcagaggagccgagcttgggacgactttctaga 645
              || |||||||||||||||||||||||||||| |||||| || || ||||||||
Sbjct: 105914 gctatggcagtcaccacaaagcagaggagcctagcttgagatgattttctaga 105862



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  202 bits (102), Expect = 1e-48
 Identities = 180/206 (87%)
 Strand = Plus / Minus

                                                                            
Query: 331      acctttctgttctgctaaaaggtaaaacggaatgtgagctaccatcttggttgctccttc 390
                |||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||| |||||||
Sbjct: 31933409 acctttttgttcagctaacaggtagaacggaatgtgagctaccatctttgttcctccttc 31933350

                                                                            
Query: 391      gctccagttcacaatcccaggaccatttccttgggcagtggatggtcccagtacagacaa 450
                 |||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||| ||
Sbjct: 31933349 actccagttgacaataccaggaccatttccttgtgcggtggatggtcctagtacagataa 31933290

                                                                            
Query: 451      acaaatggctggttcattcatgagccctaaatagtcacaggcgcgctgccagactcgcct 510
                ||||||||| ||||||||||  || |||||||||||||| || || ||||| |||| |||
Sbjct: 31933289 acaaatggccggttcattcaatagacctaaatagtcacaagcacgttgccacactctcct 31933230

                                          
Query: 511      gtctgaggtcctggaccgagcgacct 536
                ||| ||||| | ||| ||||||||||
Sbjct: 31933229 gtccgaggttcgggaacgagcgacct 31933204



 Score =  137 bits (69), Expect = 5e-29
 Identities = 102/113 (90%)
 Strand = Plus / Minus

                                                                            
Query: 533      accttagccaatgatacacgtgctcttggaagcagctcgttatggcatgttgctagcttc 592
                ||||| |||||||||||||||||||||||||||| ||| |||||| | ||||||||||| 
Sbjct: 31933108 accttggccaatgatacacgtgctcttggaagcaactcattatggaacgttgctagcttt 31933049

                                                                     
Query: 593      gcaatggcagtcaccacaaagcagaggagccgagcttgggacgactttctaga 645
                || |||||||||||||||||||||||||||| |||||| || || ||||||||
Sbjct: 31933048 gctatggcagtcaccacaaagcagaggagcctagcttgagatgattttctaga 31932996



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>gb|AC145218.29| Medicago truncatula clone mth2-34l18, complete sequence
          Length = 134519

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 447   acaaacaaatggctggttcat 467
             |||||||||||||||||||||
Sbjct: 75258 acaaacaaatggctggttcat 75278



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>gb|AC102535.17| Mus musculus chromosome 7, clone RP23-61O11, complete sequence
          Length = 220003

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   cataggaccaagggaccagc 134
             ||||||||||||||||||||
Sbjct: 60129 cataggaccaagggaccagc 60110



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>gb|AC110261.25| Mus musculus chromosome 1, clone RP23-289I3, complete sequence
          Length = 213116

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    aggaactcataggaccaagg 127
              ||||||||||||||||||||
Sbjct: 144619 aggaactcataggaccaagg 144638



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>gb|AC158612.7| Mus musculus 10 BAC RP23-39I3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 206234

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 508   cctgtctgaggtcctggacc 527
             ||||||||||||||||||||
Sbjct: 52108 cctgtctgaggtcctggacc 52089



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>gb|AC158603.6| Mus musculus 10 BAC RP24-466C12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 149929

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 508   cctgtctgaggtcctggacc 527
             ||||||||||||||||||||
Sbjct: 29006 cctgtctgaggtcctggacc 29025



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>gb|AC141893.4| Mus musculus BAC clone RP23-324F17 from chromosome 15, complete
            sequence
          Length = 182603

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 116  ataggaccaagggaccagca 135
            ||||||||||||||||||||
Sbjct: 2537 ataggaccaagggaccagca 2556



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>emb|CT009719.10| Mouse DNA sequence from clone RP23-65P17 on chromosome 17, complete
             sequence
          Length = 205369

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   aatcatgagatggtggacct 334
             ||||||||||||||||||||
Sbjct: 92256 aatcatgagatggtggacct 92275



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>ref|XM_748508.1| Aspergillus fumigatus Af293 nitrate reductase (Afu5g10420) partial
            mRNA
          Length = 3081

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 248  atcattgcatggatccatgc 267
            ||||||||||||||||||||
Sbjct: 1203 atcattgcatggatccatgc 1184



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>gb|AC125541.4| Mus musculus BAC clone RP23-237I10 from chromosome 15, complete sequence
          Length = 215447

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    ataggaccaagggaccagca 135
              ||||||||||||||||||||
Sbjct: 104663 ataggaccaagggaccagca 104644



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>emb|AL358033.15| Human DNA sequence from clone RP11-657A9 on chromosome 10, complete
             sequence
          Length = 76874

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   tggatcatcttcagcaggct 205
             ||||||||||||||||||||
Sbjct: 72955 tggatcatcttcagcaggct 72974



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>emb|AL669816.3| Mouse DNA sequence from clone RP23-266C4 on chromosome 11 Contains the 3'
              end of a novel gene, complete sequence
          Length = 203827

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 438    ccagtacagacaaacaaatg 457
              ||||||||||||||||||||
Sbjct: 149413 ccagtacagacaaacaaatg 149432



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>ref|NM_073252.2| Caenorhabditis elegans B0024.11 (B0024.11) mRNA, complete cds
          Length = 1788

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 327  gtggacctttctgttctgct 346
            ||||||||||||||||||||
Sbjct: 1522 gtggacctttctgttctgct 1503



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>gb|AC093806.2| Homo sapiens BAC clone RP11-327P24 from 2, complete sequence
          Length = 87841

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    ccacacacccacaaactgca 74
             ||||||||||||||||||||
Sbjct: 56553 ccacacacccacaaactgca 56534



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>emb|BX001055.11| Zebrafish DNA sequence from clone CH211-87M5 in linkage group 9,
            complete sequence
          Length = 194418

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 215  aatgatctctgtgcacatgg 234
            ||||||||||||||||||||
Sbjct: 8223 aatgatctctgtgcacatgg 8204



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>emb|BX276095.7| Zebrafish DNA sequence from clone CH211-225H17, complete sequence
          Length = 197554

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    aatgatctctgtgcacatgg 234
              ||||||||||||||||||||
Sbjct: 152649 aatgatctctgtgcacatgg 152668



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>gb|AC153874.4| Mus musculus 10 BAC RP23-250K15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 129931

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 508    cctgtctgaggtcctggacc 527
              ||||||||||||||||||||
Sbjct: 112190 cctgtctgaggtcctggacc 112171



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>emb|Z71178.1|CEB0024 Caenorhabditis elegans Cosmid B0024, complete sequence
          Length = 42154

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   gtggacctttctgttctgct 346
             ||||||||||||||||||||
Sbjct: 31217 gtggacctttctgttctgct 31236



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>gb|AC151580.2| Mus musculus BAC clone RP23-65L6 from 18, complete sequence
          Length = 236806

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    taggaccaagggaccagcag 136
              ||||||||||||||||||||
Sbjct: 154093 taggaccaagggaccagcag 154112


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,906,484
Number of Sequences: 3902068
Number of extensions: 4906484
Number of successful extensions: 87518
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87428
Number of HSP's gapped (non-prelim): 90
length of query: 657
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 634
effective length of database: 17,143,297,704
effective search space: 10868850744336
effective search space used: 10868850744336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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