Clone Name | rbasd16h03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK070625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055D06, full insert sequence Length = 2165 Score = 333 bits (168), Expect = 4e-88 Identities = 282/320 (88%) Strand = Plus / Minus Query: 326 ggtggacctttctgttctgctaaaaggtaaaacggaatgtgagctaccatcttggttgct 385 |||| |||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||| || Sbjct: 1723 ggtgcacctttttgttcagctaacaggtagaacggaatgtgagctaccatctttgttcct 1664 Query: 386 ccttcgctccagttcacaatcccaggaccatttccttgggcagtggatggtcccagtaca 445 ||||| |||||||| ||||| ||||||||||||||||| || ||||||||||| |||||| Sbjct: 1663 ccttcactccagttgacaataccaggaccatttccttgtgcggtggatggtcctagtaca 1604 Query: 446 gacaaacaaatggctggttcattcatgagccctaaatagtcacaggcgcgctgccagact 505 || ||||||||||| |||||||||| || |||||||||||||| || || ||||| ||| Sbjct: 1603 gataaacaaatggccggttcattcaatagacctaaatagtcacaagcacgttgccacact 1544 Query: 506 cgcctgtctgaggtcctggaccgagcgaccttagccaatgatacacgtgctcttggaagc 565 | |||||| ||||| | ||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 1543 ctcctgtccgaggttcgggaacgagcgaccttggccaatgatacacgtgctcttggaagc 1484 Query: 566 agctcgttatggcatgttgctagcttcgcaatggcagtcaccacaaagcagaggagccga 625 | ||| |||||| | ||||||||||| || |||||||||||||||||||||||||||| | Sbjct: 1483 aactcattatggaacgttgctagctttgctatggcagtcaccacaaagcagaggagccta 1424 Query: 626 gcttgggacgactttctaga 645 ||||| || || |||||||| Sbjct: 1423 gcttgagatgattttctaga 1404
>ref|XM_473973.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1665 Score = 208 bits (105), Expect = 2e-50 Identities = 186/213 (87%) Strand = Plus / Minus Query: 326 ggtggacctttctgttctgctaaaaggtaaaacggaatgtgagctaccatcttggttgct 385 |||| |||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||| || Sbjct: 1622 ggtgcacctttttgttcagctaacaggtagaacggaatgtgagctaccatctttgttcct 1563 Query: 386 ccttcgctccagttcacaatcccaggaccatttccttgggcagtggatggtcccagtaca 445 ||||| |||||||| ||||| ||||||||||||||||| || ||||||||||| |||||| Sbjct: 1562 ccttcactccagttgacaataccaggaccatttccttgtgcggtggatggtcctagtaca 1503 Query: 446 gacaaacaaatggctggttcattcatgagccctaaatagtcacaggcgcgctgccagact 505 || ||||||||||| |||||||||| || |||||||||||||| || || ||||| ||| Sbjct: 1502 gataaacaaatggccggttcattcaatagacctaaatagtcacaagcacgttgccacact 1443 Query: 506 cgcctgtctgaggtcctggaccgagcgacctta 538 | |||||| ||||| | ||| |||||||||||| Sbjct: 1442 ctcctgtccgaggttcgggaacgagcgacctta 1410 Score = 137 bits (69), Expect = 5e-29 Identities = 102/113 (90%) Strand = Plus / Minus Query: 533 accttagccaatgatacacgtgctcttggaagcagctcgttatggcatgttgctagcttc 592 ||||| |||||||||||||||||||||||||||| ||| |||||| | ||||||||||| Sbjct: 1379 accttggccaatgatacacgtgctcttggaagcaactcattatggaacgttgctagcttt 1320 Query: 593 gcaatggcagtcaccacaaagcagaggagccgagcttgggacgactttctaga 645 || |||||||||||||||||||||||||||| |||||| || || |||||||| Sbjct: 1319 gctatggcagtcaccacaaagcagaggagcctagcttgagatgattttctaga 1267
>emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060E08, complete sequence Length = 166951 Score = 202 bits (102), Expect = 1e-48 Identities = 180/206 (87%) Strand = Plus / Minus Query: 331 acctttctgttctgctaaaaggtaaaacggaatgtgagctaccatcttggttgctccttc 390 |||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||| ||||||| Sbjct: 106275 acctttttgttcagctaacaggtagaacggaatgtgagctaccatctttgttcctccttc 106216 Query: 391 gctccagttcacaatcccaggaccatttccttgggcagtggatggtcccagtacagacaa 450 |||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||| || Sbjct: 106215 actccagttgacaataccaggaccatttccttgtgcggtggatggtcctagtacagataa 106156 Query: 451 acaaatggctggttcattcatgagccctaaatagtcacaggcgcgctgccagactcgcct 510 ||||||||| |||||||||| || |||||||||||||| || || ||||| |||| ||| Sbjct: 106155 acaaatggccggttcattcaatagacctaaatagtcacaagcacgttgccacactctcct 106096 Query: 511 gtctgaggtcctggaccgagcgacct 536 ||| ||||| | ||| |||||||||| Sbjct: 106095 gtccgaggttcgggaacgagcgacct 106070 Score = 137 bits (69), Expect = 5e-29 Identities = 102/113 (90%) Strand = Plus / Minus Query: 533 accttagccaatgatacacgtgctcttggaagcagctcgttatggcatgttgctagcttc 592 ||||| |||||||||||||||||||||||||||| ||| |||||| | ||||||||||| Sbjct: 105974 accttggccaatgatacacgtgctcttggaagcaactcattatggaacgttgctagcttt 105915 Query: 593 gcaatggcagtcaccacaaagcagaggagccgagcttgggacgactttctaga 645 || |||||||||||||||||||||||||||| |||||| || || |||||||| Sbjct: 105914 gctatggcagtcaccacaaagcagaggagcctagcttgagatgattttctaga 105862
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 202 bits (102), Expect = 1e-48 Identities = 180/206 (87%) Strand = Plus / Minus Query: 331 acctttctgttctgctaaaaggtaaaacggaatgtgagctaccatcttggttgctccttc 390 |||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||| ||||||| Sbjct: 31933409 acctttttgttcagctaacaggtagaacggaatgtgagctaccatctttgttcctccttc 31933350 Query: 391 gctccagttcacaatcccaggaccatttccttgggcagtggatggtcccagtacagacaa 450 |||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||| || Sbjct: 31933349 actccagttgacaataccaggaccatttccttgtgcggtggatggtcctagtacagataa 31933290 Query: 451 acaaatggctggttcattcatgagccctaaatagtcacaggcgcgctgccagactcgcct 510 ||||||||| |||||||||| || |||||||||||||| || || ||||| |||| ||| Sbjct: 31933289 acaaatggccggttcattcaatagacctaaatagtcacaagcacgttgccacactctcct 31933230 Query: 511 gtctgaggtcctggaccgagcgacct 536 ||| ||||| | ||| |||||||||| Sbjct: 31933229 gtccgaggttcgggaacgagcgacct 31933204 Score = 137 bits (69), Expect = 5e-29 Identities = 102/113 (90%) Strand = Plus / Minus Query: 533 accttagccaatgatacacgtgctcttggaagcagctcgttatggcatgttgctagcttc 592 ||||| |||||||||||||||||||||||||||| ||| |||||| | ||||||||||| Sbjct: 31933108 accttggccaatgatacacgtgctcttggaagcaactcattatggaacgttgctagcttt 31933049 Query: 593 gcaatggcagtcaccacaaagcagaggagccgagcttgggacgactttctaga 645 || |||||||||||||||||||||||||||| |||||| || || |||||||| Sbjct: 31933048 gctatggcagtcaccacaaagcagaggagcctagcttgagatgattttctaga 31932996
>gb|AC145218.29| Medicago truncatula clone mth2-34l18, complete sequence Length = 134519 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 447 acaaacaaatggctggttcat 467 ||||||||||||||||||||| Sbjct: 75258 acaaacaaatggctggttcat 75278
>gb|AC102535.17| Mus musculus chromosome 7, clone RP23-61O11, complete sequence Length = 220003 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cataggaccaagggaccagc 134 |||||||||||||||||||| Sbjct: 60129 cataggaccaagggaccagc 60110
>gb|AC110261.25| Mus musculus chromosome 1, clone RP23-289I3, complete sequence Length = 213116 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 aggaactcataggaccaagg 127 |||||||||||||||||||| Sbjct: 144619 aggaactcataggaccaagg 144638
>gb|AC158612.7| Mus musculus 10 BAC RP23-39I3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206234 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 cctgtctgaggtcctggacc 527 |||||||||||||||||||| Sbjct: 52108 cctgtctgaggtcctggacc 52089
>gb|AC158603.6| Mus musculus 10 BAC RP24-466C12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 149929 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 cctgtctgaggtcctggacc 527 |||||||||||||||||||| Sbjct: 29006 cctgtctgaggtcctggacc 29025
>gb|AC141893.4| Mus musculus BAC clone RP23-324F17 from chromosome 15, complete sequence Length = 182603 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ataggaccaagggaccagca 135 |||||||||||||||||||| Sbjct: 2537 ataggaccaagggaccagca 2556
>emb|CT009719.10| Mouse DNA sequence from clone RP23-65P17 on chromosome 17, complete sequence Length = 205369 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 aatcatgagatggtggacct 334 |||||||||||||||||||| Sbjct: 92256 aatcatgagatggtggacct 92275
>ref|XM_748508.1| Aspergillus fumigatus Af293 nitrate reductase (Afu5g10420) partial mRNA Length = 3081 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 atcattgcatggatccatgc 267 |||||||||||||||||||| Sbjct: 1203 atcattgcatggatccatgc 1184
>gb|AC125541.4| Mus musculus BAC clone RP23-237I10 from chromosome 15, complete sequence Length = 215447 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ataggaccaagggaccagca 135 |||||||||||||||||||| Sbjct: 104663 ataggaccaagggaccagca 104644
>emb|AL358033.15| Human DNA sequence from clone RP11-657A9 on chromosome 10, complete sequence Length = 76874 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 tggatcatcttcagcaggct 205 |||||||||||||||||||| Sbjct: 72955 tggatcatcttcagcaggct 72974
>emb|AL669816.3| Mouse DNA sequence from clone RP23-266C4 on chromosome 11 Contains the 3' end of a novel gene, complete sequence Length = 203827 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 ccagtacagacaaacaaatg 457 |||||||||||||||||||| Sbjct: 149413 ccagtacagacaaacaaatg 149432
>ref|NM_073252.2| Caenorhabditis elegans B0024.11 (B0024.11) mRNA, complete cds Length = 1788 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gtggacctttctgttctgct 346 |||||||||||||||||||| Sbjct: 1522 gtggacctttctgttctgct 1503
>gb|AC093806.2| Homo sapiens BAC clone RP11-327P24 from 2, complete sequence Length = 87841 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 ccacacacccacaaactgca 74 |||||||||||||||||||| Sbjct: 56553 ccacacacccacaaactgca 56534
>emb|BX001055.11| Zebrafish DNA sequence from clone CH211-87M5 in linkage group 9, complete sequence Length = 194418 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 aatgatctctgtgcacatgg 234 |||||||||||||||||||| Sbjct: 8223 aatgatctctgtgcacatgg 8204
>emb|BX276095.7| Zebrafish DNA sequence from clone CH211-225H17, complete sequence Length = 197554 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 aatgatctctgtgcacatgg 234 |||||||||||||||||||| Sbjct: 152649 aatgatctctgtgcacatgg 152668
>gb|AC153874.4| Mus musculus 10 BAC RP23-250K15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 129931 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 cctgtctgaggtcctggacc 527 |||||||||||||||||||| Sbjct: 112190 cctgtctgaggtcctggacc 112171
>emb|Z71178.1|CEB0024 Caenorhabditis elegans Cosmid B0024, complete sequence Length = 42154 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 gtggacctttctgttctgct 346 |||||||||||||||||||| Sbjct: 31217 gtggacctttctgttctgct 31236
>gb|AC151580.2| Mus musculus BAC clone RP23-65L6 from 18, complete sequence Length = 236806 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 taggaccaagggaccagcag 136 |||||||||||||||||||| Sbjct: 154093 taggaccaagggaccagcag 154112 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,906,484 Number of Sequences: 3902068 Number of extensions: 4906484 Number of successful extensions: 87518 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87428 Number of HSP's gapped (non-prelim): 90 length of query: 657 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 634 effective length of database: 17,143,297,704 effective search space: 10868850744336 effective search space used: 10868850744336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)