>YGY1_YEAST (P53073) Hypothetical 21.5 kDa protein in SEC15-SAP4 intergenic|
           region
          Length = 190

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
 Frame = -2

Query: 601 TRSAPEADDAASARQRKETEAAWKGQKAWEVAQAPFKNLXXXXXXXXMAGSTVHLFSIGI 422
           TR   +A    ++  +K      + QKAW++A  P K++        M+G+++ +  I  
Sbjct: 46  TRKQQDATSQTTSLAQKNQITVLQVQKAWQIALQPAKSIPMNIFMSYMSGTSLQIIPIMT 105

Query: 421 VFSALWQPFNALRSVGKVFEPF---KDPRVDTLAPKLLFTALNLAAMGLGVWKLNTLGLL 251
               L  P  A+ S    F+P    K  +        ++       M +G  KLN++GL+
Sbjct: 106 ALMLLSGPIKAIFSTRSAFKPVLGNKATQSQVQTAMFMYIVFQGVLMYIGYRKLNSMGLI 165

Query: 250 PTNASDWV 227
           P    DW+
Sbjct: 166 PNAKGDWL 173

>NRCAM_CHICK (P35331) Neuronal cell adhesion molecule precursor (Nr-CAM)|
           (NgCAM-related cell adhesion molecule) (Ng-CAM-related)
           (hBravo)
          Length = 1284

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 174 KGIPPPAYSTSRAGDSEDTQSDAFVGRRPN 263
           KG PPP++S +R G   D   DA V  +PN
Sbjct: 66  KGKPPPSFSWTRNGTHFDIDKDAQVTMKPN 95

>AOX1_AERPE (Q9YDX6) Heme-copper oxidase subunit I+III (EC 1.9.3.-)|
          Length = 815

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 347 WVLKWFENFPDRSECVEGLPESREDDT 427
           W L+WF N P      +G+P  R+D+T
Sbjct: 496 WTLEWFTNSPPPKHNFDGVPVVRKDNT 522

>NU1M_CROLA (P34186) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 324

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -2

Query: 322 LLFTALNLAAMGLGVWKLNTLG---LLPTNASDWVSSLSPAREVEYAGGGIPLM 170
           LL  A  LAAM    W ++TL      P + ++  S L+P   VEYAGG   L+
Sbjct: 180 LLLPACPLAAM----WYISTLAETNRAPFDLTEGESELAPGFNVEYAGGPFALL 229

>CYB_SULAC (P39480) Cytochrome b|
          Length = 563

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -1

Query: 179 PLDVMPLVIFNWSNSXXXXXXXXXXX*SEIY--TLVKGEILFGFVGEILFGFVIFSFXRV 6
           PL ++ ++++ W               S +    +   EIL G VG + F   +F+F + 
Sbjct: 397 PLVIIGIIVYLWPTERKTKTVSTTATDSRVIKMNITPMEILLGAVGTLSFAATLFNFIQF 456

Query: 5   P 3
           P
Sbjct: 457 P 457

>SP100_MUSCR (O35893) Nuclear autoantigen Sp-100 (Speckled 100 kDa) (Nuclear|
           dot-associated Sp100 protein)
          Length = 482

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 24/85 (28%), Positives = 34/85 (40%)
 Frame = +3

Query: 186 PPAYSTSRAGDSEDTQSDAFVGRRPNVLSFQTPKPIAAKLRAVKSNLGASVSTLGSLNGS 365
           PP   T R GD+ DT+S   + RR      +  +  +  +R +K  +  S          
Sbjct: 302 PPTLRTDRRGDTSDTESSIIIRRRKRTGRKKRERLGSYLIRNIKIPMKTS---------W 352

Query: 366 KTFPTDRSALKGCQRAEKTIPMLNR 440
           KT    RSA    QR  K  P + R
Sbjct: 353 KTAVLARSANTSSQRRRKRGPRIPR 377

>GPT1_YEAST (P32784) Glycerol-3-phosphate O-acyltransferase 1 (EC 2.3.1.15)|
           (G-3-P acyltransferase 1) (Dihydroxyacetone phosphate
           acyltransferase 1) (EC 2.3.1.42) (DHAP-AT 1)
           (Glycerol-3-phosphate / dihydroxyacetone phosphate
           acyltransferase 1)
          Length = 759

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 225 DTQSDAFVGRRPNVLSFQTPKPIAAKLRAVKSNLGASVSTLGSLNGSKTFPT-DRSALK 398
           D   D F   RP VLS  +PK +  KL+  + NL   +  + +  GS+ FP  D +AL+
Sbjct: 546 DIGMDGFKSLRPLVLSLTSPKGL-QKLQKDRRNLAERIIEVVNNFGSELFPDFDSAALR 603

>GLIS1_MOUSE (Q8K1M4) Zinc finger protein GLIS1 (GLI-similar 1) (Gli homologous|
           protein 1) (GliH1)
          Length = 789

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 171 IKGIPPPAYSTSRAGDSEDTQSDAFVGRRPNVLSFQTPKPI 293
           +KG+ PP    +    S   QS + V  +P   SFQ+P P+
Sbjct: 637 LKGLGPPPLPPASQSQSPGGQSFSTVPSKPTYPSFQSPPPL 677


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,770,606
Number of Sequences: 219361
Number of extensions: 1831106
Number of successful extensions: 4805
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4800
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)