ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16g22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101285.1| Oryza sativa (japonica cultivar-group) cDNA clon... 502 e-139
2dbj|AK059166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 502 e-139
3gb|AY105445.1| Zea mays PCO122547 mRNA sequence 398 e-108
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 190 4e-45
5gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare str... 190 4e-45
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
7gb|BT014174.1| Lycopersicon esculentum clone 133316R, mRNA sequence 88 4e-14
8emb|AL365234.1|ATT30N20 Arabidopsis thaliana DNA chromosome 5, B... 74 6e-10
9ref|NM_121116.2| Arabidopsis thaliana unknown protein AT5G10780 ... 72 2e-09
10gb|AY057731.1| Arabidopsis thaliana AT5g10780/T30N20_50 mRNA, co... 72 2e-09
11gb|AF428403.1|AF428403 Arabidopsis thaliana AT5g10780/T30N20_50 ... 72 2e-09
12gb|AY037209.1| Arabidopsis thaliana AT5g10780/T30N20_50 mRNA, co... 72 2e-09
13gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 54 5e-04
14emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 54 5e-04
15gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 54 5e-04
16gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 54 5e-04
17gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 48 0.034
18gb|CP000316.1| Polaromonas sp. JS666, complete genome 46 0.13
19gb|BC111148.1| Bos taurus cDNA clone MGC:134460 IMAGE:8051894, c... 46 0.13
20ref|NM_001038222.1| Bos taurus similar to stromal cell-derived f... 46 0.13
21gb|AF466104.1| Xenophilus azovorans aerobic azoreductase (azoB) ... 44 0.53
22gb|AC104908.10| Mus musculus chromosome 3, clone RP23-325M18, co... 44 0.53
23gb|AC114621.8| Mus musculus chromosome 3, clone RP24-93M7, compl... 42 2.1
24gb|AC113988.8| Mus musculus chromosome 3, clone RP24-129H9, comp... 42 2.1
25gb|AC092214.3| Homo sapiens BAC clone RP11-811J9 from 7, complet... 42 2.1
26gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome 42 2.1
27emb|AL592465.8| Mouse DNA sequence from clone RP23-36C4 on chrom... 42 2.1
28emb|AJ719740.1| Gallus gallus mRNA for hypothetical protein, clo... 42 2.1
29dbj|AK139274.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 42 2.1
30emb|CR390141.1| Gallus gallus finished cDNA, clone ChEST165b10 42 2.1
31ref|NM_001012848.1| Gallus gallus similar to hypothetical protei... 42 2.1
32gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence 40 8.2
33gb|AC115816.9| Mus musculus chromosome 6, clone RP23-432K18, com... 40 8.2
34gb|AC121882.3| Mus musculus BAC clone RP24-135M19 from chromosom... 40 8.2
35gb|AC127695.3| Mus musculus BAC clone RP23-310B17 from 17, compl... 40 8.2
36emb|CR712875.2|CNS0GD07 Tetraodon nigroviridis full-length cDNA 40 8.2
37emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 40 8.2
38gb|AC157870.3| Loxodonta africana clone VMRC15-210D1, complete s... 40 8.2
39dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
40gb|AC155837.7| Mus musculus 6 BAC RP24-409L6 (Roswell Park Cance... 40 8.2
41gb|AE009725.1| Brucella melitensis 16M chromosome II, section 87... 40 8.2
42gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 8.2
43gb|AC022469.5|AC022469 Homo sapiens chromosome 14 clone RP11-588... 40 8.2
44gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 40 8.2
45dbj|AP005179.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
46ref|XM_315263.2| Anopheles gambiae str. PEST ENSANGP00000022295 ... 40 8.2
47dbj|AP004384.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
48gb|AC007257.9|AC007257 Drosophila melanogaster, chromosome 2L, r... 40 8.2
49gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34... 40 8.2
50gb|AC122284.5| Mus musculus BAC clone RP23-246A5 from 6, complet... 40 8.2
51gb|AC124527.5| Mus musculus BAC clone RP23-411B11 from 1, comple... 40 8.2
52emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II... 40 8.2
53dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0... 40 8.2
54dbj|AP004483.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 8.2 
>dbj|AK101285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033E17, full
           insert sequence
          Length = 895

 Score =  502 bits (253), Expect = e-139
 Identities = 388/433 (89%)
 Strand = Plus / Minus

                                                                       
Query: 173 caaggggatccctccaccagcatattcaacctcccgagcaggagacagtgaagataccca 232
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||
Sbjct: 662 caaggggatccctccaccagcatattcaacctcccgagcaggagccagtgaaaacaccca 603

                                                                       
Query: 233 gtctgatgcatttgtcggaagaagacccaatgtgttgagcttccaaacacccaaacccat 292
            |||||||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 602 atctgatgcatttgttggaagaagacccaacgtattgagcttccatacacctaaacccat 543

                                                                       
Query: 293 agcggccaagttgagagcagtgaagagtaacttaggtgcaagtgtatccacccttgggtc 352
           ||| ||||||||||||||| | ||||  ||||||||||| || |||||||||||||||||
Sbjct: 542 agctgccaagttgagagcaataaagaccaacttaggtgctagagtatccacccttgggtc 483

                                                                       
Query: 353 cttaaatggttcgaaaactttcccgacagatcggagtgcgttgaagggctgccagagagc 412
           ||| |||||||| |||||||| || ||||| ||||| ||| ||| ||||||||| |||||
Sbjct: 482 cttgaatggttcaaaaactttgccaacagagcggagggcgctgatgggctgccacagagc 423

                                                                       
Query: 413 agagaagacgataccaatgctaaacaggtggactgtgctcccggccatccacatcataaa 472
            |||||   |||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 422 ggagaacgtgatacctatgctaaacaggtggacggtgctcccggccatccacatcatgaa 363

                                                                       
Query: 473 acccatcatcatcaggttcttgaagggcgcctgcgccacctcccaggctttctgcccctt 532
           |||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct: 362 acccatcatcatcaggttcttgaacggcgcctgcgccacctcccacgctttctgcgcctt 303

                                                                       
Query: 533 ccaggcagcttcggtctccttgcgctgccgcgcgctggcggcgtcgtccgcttccggggc 592
           ||| || |  ||||  ||||| ||||||||||||| ||||||||||||||| || |||||
Sbjct: 302 ccacgcggtctcggaatccttccgctgccgcgcgccggcggcgtcgtccgcgtcgggggc 243

                        
Query: 593 ggatctggtgaag 605
           |||||||||||||
Sbjct: 242 ggatctggtgaag 230
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>dbj|AK059166.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-E02, full
           insert sequence
          Length = 850

 Score =  502 bits (253), Expect = e-139
 Identities = 388/433 (89%)
 Strand = Plus / Minus

                                                                       
Query: 173 caaggggatccctccaccagcatattcaacctcccgagcaggagacagtgaagataccca 232
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||
Sbjct: 617 caaggggatccctccaccagcatattcaacctcccgagcaggagccagtgaaaacaccca 558

                                                                       
Query: 233 gtctgatgcatttgtcggaagaagacccaatgtgttgagcttccaaacacccaaacccat 292
            |||||||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 557 atctgatgcatttgttggaagaagacccaacgtattgagcttccatacacctaaacccat 498

                                                                       
Query: 293 agcggccaagttgagagcagtgaagagtaacttaggtgcaagtgtatccacccttgggtc 352
           ||| ||||||||||||||| | ||||  ||||||||||| || |||||||||||||||||
Sbjct: 497 agctgccaagttgagagcaataaagaccaacttaggtgctagagtatccacccttgggtc 438

                                                                       
Query: 353 cttaaatggttcgaaaactttcccgacagatcggagtgcgttgaagggctgccagagagc 412
           ||| |||||||| |||||||| || ||||| ||||| ||| ||| ||||||||| |||||
Sbjct: 437 cttgaatggttcaaaaactttgccaacagagcggagggcgctgatgggctgccacagagc 378

                                                                       
Query: 413 agagaagacgataccaatgctaaacaggtggactgtgctcccggccatccacatcataaa 472
            |||||   |||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 377 ggagaacgtgatacctatgctaaacaggtggacggtgctcccggccatccacatcatgaa 318

                                                                       
Query: 473 acccatcatcatcaggttcttgaagggcgcctgcgccacctcccaggctttctgcccctt 532
           |||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct: 317 acccatcatcatcaggttcttgaacggcgcctgcgccacctcccacgctttctgcgcctt 258

                                                                       
Query: 533 ccaggcagcttcggtctccttgcgctgccgcgcgctggcggcgtcgtccgcttccggggc 592
           ||| || |  ||||  ||||| ||||||||||||| ||||||||||||||| || |||||
Sbjct: 257 ccacgcggtctcggaatccttccgctgccgcgcgccggcggcgtcgtccgcgtcgggggc 198

                        
Query: 593 ggatctggtgaag 605
           |||||||||||||
Sbjct: 197 ggatctggtgaag 185
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>gb|AY105445.1| Zea mays PCO122547 mRNA sequence
          Length = 856

 Score =  398 bits (201), Expect = e-108
 Identities = 381/441 (86%)
 Strand = Plus / Minus

                                                                       
Query: 165 cattacatcaaggggatccctccaccagcatattcaacctcccgagcaggagacagtgaa 224
           ||||| || ||||||| |||||| || ||||||||||||||||||||||||| ||| |||
Sbjct: 670 cattaaattaaggggagccctcctccggcatattcaacctcccgagcaggagccagagaa 611

                                                                       
Query: 225 gatacccagtctgatgcatttgtcggaagaagacccaatgtgttgagcttccaaacaccc 284
           || ||||| ||||||| |||||| |||||||| |||||||| || |||||||| | ||||
Sbjct: 610 gacacccaatctgatggatttgttggaagaaggcccaatgtattaagcttccatataccc 551

                                                                       
Query: 285 aaacccatagcggccaagttgagagcagtgaagagtaacttaggtgcaagtgtatccacc 344
           || ||||| || ||||| ||||| ||| | ||||| |||||||| ||||  |||||||||
Sbjct: 550 aatcccatggcagccaaattgagggcaataaagagcaacttaggagcaatagtatccacc 491

                                                                       
Query: 345 cttgggtccttaaatggttcgaaaactttcccgacagatcggagtgcgttgaagggctgc 404
           |||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||| |||
Sbjct: 490 cttgggtccttaaatggttcaaaaactttcccaacagatcggagagcgttgaggggttgc 431

                                                                       
Query: 405 cagagagcagagaagacgataccaatgctaaacaggtggactgtgctcccggccatccac 464
           || ||||||||||||   || || ||||| || |||||||| |||||||| |||||||||
Sbjct: 430 cacagagcagagaaggtaattccgatgctgaagaggtggacagtgctccctgccatccac 371

                                                                       
Query: 465 atcataaaacccatcatcatcaggttcttgaagggcgcctgcgccacctcccaggctttc 524
           |||||||| ||||||||||||||||||||||| || |||||||| || ||||| ||||||
Sbjct: 370 atcataaatcccatcatcatcaggttcttgaacggagcctgcgcaacttcccaagctttc 311

                                                                       
Query: 525 tgccccttccaggcagcttcggtctccttgcgctgccgcgcgctggcggcgtcgtccgct 584
           ||| ||||||| ||||| ||||  ||||||||||| ||||| |  |||||||||||||| 
Sbjct: 310 tgcgccttccatgcagcctcggagtccttgcgctggcgcgctccagcggcgtcgtccgcg 251

                                
Query: 585 tccggggcggatctggtgaag 605
           || || |||||||||||||||
Sbjct: 250 tcgggcgcggatctggtgaag 230
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  190 bits (96), Expect = 4e-45
 Identities = 138/152 (90%)
 Strand = Plus / Plus

                                                                            
Query: 378      acagatcggagtgcgttgaagggctgccagagagcagagaagacgataccaatgctaaac 437
                ||||| ||||| ||| ||| ||||||||| ||||| |||||   |||||| |||||||||
Sbjct: 13841373 acagagcggagggcgctgatgggctgccacagagcggagaacgtgatacctatgctaaac 13841432

                                                                            
Query: 438      aggtggactgtgctcccggccatccacatcataaaacccatcatcatcaggttcttgaag 497
                |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 13841433 aggtggacggtgctcccggccatccacatcatgaaacccatcatcatcaggttcttgaac 13841492

                                                
Query: 498      ggcgcctgcgccacctcccaggctttctgccc 529
                |||||||||||||||||||| |||||||||||
Sbjct: 13841493 ggcgcctgcgccacctcccacgctttctgccc 13841524



 Score =  111 bits (56), Expect = 3e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                            
Query: 272      cttccaaacacccaaacccatagcggccaagttgagagcagtgaagagtaacttaggtgc 331
                |||||| ||||| ||||||||||| ||||||||||||||| | ||||  |||||||||||
Sbjct: 13840389 cttccatacacctaaacccatagctgccaagttgagagcaataaagaccaacttaggtgc 13840448

                                                        
Query: 332      aagtgtatccacccttgggtccttaaatggttcgaaaact 371
                 || |||||||||||||||||||| |||||||| ||||||
Sbjct: 13840449 tagagtatccacccttgggtccttgaatggttcaaaaact 13840488



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                            
Query: 205      cccgagcaggagacagtgaagatacccagtctgatgcatttgtcggaagaagacccaatg 264
                |||||||||||| ||||||| | ||||| |||||||||||||| |||||||||||||| |
Sbjct: 13840241 cccgagcaggagccagtgaaaacacccaatctgatgcatttgttggaagaagacccaacg 13840300

                         
Query: 265      tgttgagct 273
                | |||||||
Sbjct: 13840301 tattgagct 13840309



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                                  
Query: 173      caaggggatccctccaccagcatattcaacctcc 206
                ||||||||||||||||||||||||||||||||||
Sbjct: 13839121 caaggggatccctccaccagcatattcaacctcc 13839154



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 549      tccttgcgctgccgcgcgctggcggcgtcgtcc 581
                ||||| ||||||||||||| |||||||||||||
Sbjct: 13841792 tccttccgctgccgcgcgccggcggcgtcgtcc 13841824
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>gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0048D11, from chromosome 3, complete sequence
          Length = 158911

 Score =  190 bits (96), Expect = 4e-45
 Identities = 138/152 (90%)
 Strand = Plus / Plus

                                                                          
Query: 378    acagatcggagtgcgttgaagggctgccagagagcagagaagacgataccaatgctaaac 437
              ||||| ||||| ||| ||| ||||||||| ||||| |||||   |||||| |||||||||
Sbjct: 117901 acagagcggagggcgctgatgggctgccacagagcggagaacgtgatacctatgctaaac 117960

                                                                          
Query: 438    aggtggactgtgctcccggccatccacatcataaaacccatcatcatcaggttcttgaag 497
              |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 117961 aggtggacggtgctcccggccatccacatcatgaaacccatcatcatcaggttcttgaac 118020

                                              
Query: 498    ggcgcctgcgccacctcccaggctttctgccc 529
              |||||||||||||||||||| |||||||||||
Sbjct: 118021 ggcgcctgcgccacctcccacgctttctgccc 118052



 Score =  111 bits (56), Expect = 3e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                          
Query: 272    cttccaaacacccaaacccatagcggccaagttgagagcagtgaagagtaacttaggtgc 331
              |||||| ||||| ||||||||||| ||||||||||||||| | ||||  |||||||||||
Sbjct: 116917 cttccatacacctaaacccatagctgccaagttgagagcaataaagaccaacttaggtgc 116976

                                                      
Query: 332    aagtgtatccacccttgggtccttaaatggttcgaaaact 371
               || |||||||||||||||||||| |||||||| ||||||
Sbjct: 116977 tagagtatccacccttgggtccttgaatggttcaaaaact 117016



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                          
Query: 205    cccgagcaggagacagtgaagatacccagtctgatgcatttgtcggaagaagacccaatg 264
              |||||||||||| ||||||| | ||||| |||||||||||||| |||||||||||||| |
Sbjct: 116769 cccgagcaggagccagtgaaaacacccaatctgatgcatttgttggaagaagacccaacg 116828

                       
Query: 265    tgttgagct 273
              | |||||||
Sbjct: 116829 tattgagct 116837



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                                
Query: 173    caaggggatccctccaccagcatattcaacctcc 206
              ||||||||||||||||||||||||||||||||||
Sbjct: 115649 caaggggatccctccaccagcatattcaacctcc 115682



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 549    tccttgcgctgccgcgcgctggcggcgtcgtcc 581
              ||||| ||||||||||||| |||||||||||||
Sbjct: 118320 tccttccgctgccgcgcgccggcggcgtcgtcc 118352
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  190 bits (96), Expect = 4e-45
 Identities = 138/152 (90%)
 Strand = Plus / Plus

                                                                            
Query: 378      acagatcggagtgcgttgaagggctgccagagagcagagaagacgataccaatgctaaac 437
                ||||| ||||| ||| ||| ||||||||| ||||| |||||   |||||| |||||||||
Sbjct: 13836348 acagagcggagggcgctgatgggctgccacagagcggagaacgtgatacctatgctaaac 13836407

                                                                            
Query: 438      aggtggactgtgctcccggccatccacatcataaaacccatcatcatcaggttcttgaag 497
                |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 13836408 aggtggacggtgctcccggccatccacatcatgaaacccatcatcatcaggttcttgaac 13836467

                                                
Query: 498      ggcgcctgcgccacctcccaggctttctgccc 529
                |||||||||||||||||||| |||||||||||
Sbjct: 13836468 ggcgcctgcgccacctcccacgctttctgccc 13836499



 Score =  111 bits (56), Expect = 3e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                            
Query: 272      cttccaaacacccaaacccatagcggccaagttgagagcagtgaagagtaacttaggtgc 331
                |||||| ||||| ||||||||||| ||||||||||||||| | ||||  |||||||||||
Sbjct: 13835364 cttccatacacctaaacccatagctgccaagttgagagcaataaagaccaacttaggtgc 13835423

                                                        
Query: 332      aagtgtatccacccttgggtccttaaatggttcgaaaact 371
                 || |||||||||||||||||||| |||||||| ||||||
Sbjct: 13835424 tagagtatccacccttgggtccttgaatggttcaaaaact 13835463



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                            
Query: 205      cccgagcaggagacagtgaagatacccagtctgatgcatttgtcggaagaagacccaatg 264
                |||||||||||| ||||||| | ||||| |||||||||||||| |||||||||||||| |
Sbjct: 13835216 cccgagcaggagccagtgaaaacacccaatctgatgcatttgttggaagaagacccaacg 13835275

                         
Query: 265      tgttgagct 273
                | |||||||
Sbjct: 13835276 tattgagct 13835284



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                                  
Query: 173      caaggggatccctccaccagcatattcaacctcc 206
                ||||||||||||||||||||||||||||||||||
Sbjct: 13834096 caaggggatccctccaccagcatattcaacctcc 13834129



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 549      tccttgcgctgccgcgcgctggcggcgtcgtcc 581
                ||||| ||||||||||||| |||||||||||||
Sbjct: 13836767 tccttccgctgccgcgcgccggcggcgtcgtcc 13836799
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>gb|BT014174.1| Lycopersicon esculentum clone 133316R, mRNA sequence
          Length = 908

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                       
Query: 423 ataccaatgctaaacaggtggactgtgctcccggccatccacatcataaaacccatcatc 482
           ||||||||||||||||  || |||||||| || |||||||||||||| || |||||||||
Sbjct: 324 ataccaatgctaaacaaatgaactgtgcttccagccatccacatcatgaagcccatcatc 265

                                                       
Query: 483 atcaggttcttgaagggcgcctgcgccacctcccaggctttctg 526
           ||||  |||||||| || || || ||||| ||||| ||||||||
Sbjct: 264 atcaaattcttgaaaggtgcttgtgccacttcccacgctttctg 221



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                       
Query: 183 cctccaccagcatattcaacctcccgagcaggagacagtgaagatacccagtctgatgca 242
           |||||||||| ||| ||||||||| | ||||| | ||  || || ||||| ||||| |||
Sbjct: 564 cctccaccagaatactcaacctcctgggcaggtggcaaggatgaaacccaatctgacgca 505

                                              
Query: 243 tttgtcggaagaagacccaatgtgttgagcttcca 277
           |  || |||||||||||||| ||||| ||||||||
Sbjct: 504 tgagttggaagaagacccaaagtgttaagcttcca 470
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>emb|AL365234.1|ATT30N20 Arabidopsis thaliana DNA chromosome 5, BAC clone T30N20 (ESSA project)
          Length = 98473

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 106/129 (82%)
 Strand = Plus / Minus

                                                                         
Query: 399   ggctgccagagagcagagaagacgataccaatgctaaacaggtggactgtgctcccggcc 458
             |||||||| |||||||||||    |||||||| ||||| || || |||||| | || |||
Sbjct: 16696 ggctgccaaagagcagagaaagtaataccaatactaaaaagatgaactgtgtttccagcc 16637

                                                                         
Query: 459   atccacatcataaaacccatcatcatcaggttcttgaagggcgcctgcgccacctcccag 518
             ||||||||||| ||||||||||||||||  ||||| || || |  ||||| || ||||| 
Sbjct: 16636 atccacatcatgaaacccatcatcatcaaattcttaaatggagattgcgctacttcccac 16577

                      
Query: 519   gctttctgc 527
             |||||||||
Sbjct: 16576 gctttctgc 16568
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>ref|NM_121116.2| Arabidopsis thaliana unknown protein AT5G10780 mRNA, complete cds
          Length = 903

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                       
Query: 399 ggctgccagagagcagagaagacgataccaatgctaaacaggtggactgtgctcccggcc 458
           |||||||| |||||||||||    |||||||| ||||| || || |||||| | || |||
Sbjct: 387 ggctgccaaagagcagagaaagtaataccaatactaaaaagatgaactgtgtttccagcc 328

                                       
Query: 459 atccacatcataaaacccatcatcatca 486
           ||||||||||| ||||||||||||||||
Sbjct: 327 atccacatcatgaaacccatcatcatca 300
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>gb|AY057731.1| Arabidopsis thaliana AT5g10780/T30N20_50 mRNA, complete cds
          Length = 543

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                       
Query: 399 ggctgccagagagcagagaagacgataccaatgctaaacaggtggactgtgctcccggcc 458
           |||||||| |||||||||||    |||||||| ||||| || || |||||| | || |||
Sbjct: 311 ggctgccaaagagcagagaaagtaataccaatactaaaaagatgaactgtgtttccagcc 252

                                       
Query: 459 atccacatcataaaacccatcatcatca 486
           ||||||||||| ||||||||||||||||
Sbjct: 251 atccacatcatgaaacccatcatcatca 224
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>gb|AF428403.1|AF428403 Arabidopsis thaliana AT5g10780/T30N20_50 mRNA, complete cds
          Length = 873

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                       
Query: 399 ggctgccagagagcagagaagacgataccaatgctaaacaggtggactgtgctcccggcc 458
           |||||||| |||||||||||    |||||||| ||||| || || |||||| | || |||
Sbjct: 361 ggctgccaaagagcagagaaagtaataccaatactaaaaagatgaactgtgtttccagcc 302

                                       
Query: 459 atccacatcataaaacccatcatcatca 486
           ||||||||||| ||||||||||||||||
Sbjct: 301 atccacatcatgaaacccatcatcatca 274
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>gb|AY037209.1| Arabidopsis thaliana AT5g10780/T30N20_50 mRNA, complete cds
          Length = 852

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                       
Query: 399 ggctgccagagagcagagaagacgataccaatgctaaacaggtggactgtgctcccggcc 458
           |||||||| |||||||||||    |||||||| ||||| || || |||||| | || |||
Sbjct: 387 ggctgccaaagagcagagaaagtaataccaatactaaaaagatgaactgtgtttccagcc 328

                                       
Query: 459 atccacatcataaaacccatcatcatca 486
           ||||||||||| ||||||||||||||||
Sbjct: 327 atccacatcatgaaacccatcatcatca 300
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                              
Query: 554     gcgctgccgcgcgctggcggcgtcgtccgct 584
               |||||||||||||| ||||||||||||||||
Sbjct: 2300780 gcgctgccgcgcgcgggcggcgtcgtccgct 2300750
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                             
Query: 554    gcgctgccgcgcgctggcggcgtcgtccgct 584
              |||||||||||||| ||||||||||||||||
Sbjct: 462258 gcgctgccgcgcgcgggcggcgtcgtccgct 462228
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                              
Query: 554     gcgctgccgcgcgctggcggcgtcgtccgct 584
               |||||||||||||| ||||||||||||||||
Sbjct: 1526352 gcgctgccgcgcgcgggcggcgtcgtccgct 1526382
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                              
Query: 554     gcgctgccgcgcgctggcggcgtcgtccgct 584
               |||||||||||||| ||||||||||||||||
Sbjct: 2521560 gcgctgccgcgcgcgggcggcgtcgtccgct 2521590
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 553     tgcgctgccgcgcgctggcggcgtcgtccgct 584
               ||||||||||||||| |||||||| |||||||
Sbjct: 2169586 tgcgctgccgcgcgcgggcggcgtggtccgct 2169617
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 490    tcttgaagggcgcctgcgccacc 512
              |||||||||||||||||||||||
Sbjct: 942042 tcttgaagggcgcctgcgccacc 942020
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>gb|BC111148.1| Bos taurus cDNA clone MGC:134460 IMAGE:8051894, complete cds
          Length = 1982

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 493  tgaagggcgcctgcgccacctcccagg 519
            |||||||||||| ||||||||||||||
Sbjct: 1577 tgaagggcgcctccgccacctcccagg 1551
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>ref|NM_001038222.1| Bos taurus similar to stromal cell-derived factor 2-like 1
            (MGC134460), mRNA
          Length = 1982

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 493  tgaagggcgcctgcgccacctcccagg 519
            |||||||||||| ||||||||||||||
Sbjct: 1577 tgaagggcgcctccgccacctcccagg 1551
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>gb|AF466104.1| Xenophilus azovorans aerobic azoreductase (azoB) gene, complete cds
          Length = 5782

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 554  gcgctgccgcgcgctggcggcg 575
            ||||||||||||||||||||||
Sbjct: 1985 gcgctgccgcgcgctggcggcg 1964
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>gb|AC104908.10| Mus musculus chromosome 3, clone RP23-325M18, complete sequence
          Length = 231792

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 311    agtgaagagtaacttaggtgca 332
              ||||||||||||||||||||||
Sbjct: 111701 agtgaagagtaacttaggtgca 111680
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>gb|AC114621.8| Mus musculus chromosome 3, clone RP24-93M7, complete sequence
          Length = 198404

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 81     cagggtataaatttcactttagtacagat 109
              ||||||| |||||||||||| ||||||||
Sbjct: 180301 cagggtacaaatttcactttggtacagat 180273
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>gb|AC113988.8| Mus musculus chromosome 3, clone RP24-129H9, complete sequence
          Length = 181881

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 81     cagggtataaatttcactttagtacagat 109
              ||||||| |||||||||||| ||||||||
Sbjct: 166037 cagggtacaaatttcactttggtacagat 166065
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>gb|AC092214.3| Homo sapiens BAC clone RP11-811J9 from 7, complete sequence
          Length = 72045

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 520  ctttctgccccttccaggcag 540
            |||||||||||||||||||||
Sbjct: 9204 ctttctgccccttccaggcag 9224
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>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome
          Length = 3059876

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 299     caagttgagagcagtgaagag 319
               |||||||||||||||||||||
Sbjct: 1245120 caagttgagagcagtgaagag 1245140
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>emb|AL592465.8| Mouse DNA sequence from clone RP23-36C4 on chromosome 11 Contains the
              Tbx4 gene for T-box 4, a ribosomal protein L21 (Rpl21)
              pseudogene and the 3' end of the Brip1 gene for BRCA1
              interacting protein C-terminal helicase 1, complete
              sequence
          Length = 238358

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 523    tctgccccttccaggcagctt 543
              |||||||||||||||||||||
Sbjct: 202171 tctgccccttccaggcagctt 202151
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>emb|AJ719740.1| Gallus gallus mRNA for hypothetical protein, clone 5o22
          Length = 2098

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 184 ctccaccagcatattcaacct 204
           |||||||||||||||||||||
Sbjct: 355 ctccaccagcatattcaacct 375
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>dbj|AK139274.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730089G01 product:Warning:
            possibly chimeric clone, full insert sequence
          Length = 3745

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 523  tctgccccttccaggcagctt 543
            |||||||||||||||||||||
Sbjct: 2682 tctgccccttccaggcagctt 2702
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>emb|CR390141.1| Gallus gallus finished cDNA, clone ChEST165b10
          Length = 801

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 184 ctccaccagcatattcaacct 204
           |||||||||||||||||||||
Sbjct: 149 ctccaccagcatattcaacct 169
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>ref|NM_001012848.1| Gallus gallus similar to hypothetical protein FLJ20533 (LOC420188),
           mRNA
          Length = 2098

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 184 ctccaccagcatattcaacct 204
           |||||||||||||||||||||
Sbjct: 355 ctccaccagcatattcaacct 375
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>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence
          Length = 1207381

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     ataaaatttctccaacaaac 57
              ||||||||||||||||||||
Sbjct: 317509 ataaaatttctccaacaaac 317490
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>gb|AC115816.9| Mus musculus chromosome 6, clone RP23-432K18, complete sequence
          Length = 229261

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 523    tctgccccttccaggcagct 542
              ||||||||||||||||||||
Sbjct: 202533 tctgccccttccaggcagct 202514
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>gb|AC121882.3| Mus musculus BAC clone RP24-135M19 from chromosome 1, complete sequence
          Length = 173376

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    caaggggcattacatcaagg 177
              ||||||||||||||||||||
Sbjct: 131211 caaggggcattacatcaagg 131230
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>gb|AC127695.3| Mus musculus BAC clone RP23-310B17 from 17, complete sequence
          Length = 172891

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   aagatacccagtctgatgca 242
             ||||||||||||||||||||
Sbjct: 77614 aagatacccagtctgatgca 77595
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>emb|CR712875.2|CNS0GD07 Tetraodon nigroviridis full-length cDNA
          Length = 1001

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 222 gaagatacccagtctgatgc 241
           ||||||||||||||||||||
Sbjct: 277 gaagatacccagtctgatgc 296
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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 554    gcgctgccgcgcgctggcggcgtc 577
              |||| |||||||||||||||||||
Sbjct: 311695 gcgccgccgcgcgctggcggcgtc 311672
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>gb|AC157870.3| Loxodonta africana clone VMRC15-210D1, complete sequence
          Length = 123158

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 119    caagtagtaaagccaaagag 138
              ||||||||||||||||||||
Sbjct: 102280 caagtagtaaagccaaagag 102261
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 499     gcgcctgcgccacctcccag 518
               ||||||||||||||||||||
Sbjct: 4682868 gcgcctgcgccacctcccag 4682887
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>gb|AC155837.7| Mus musculus 6 BAC RP24-409L6 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 156886

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 517    aggctttctgccccttccag 536
              ||||||||||||||||||||
Sbjct: 142820 aggctttctgccccttccag 142839
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>gb|AE009725.1| Brucella melitensis 16M chromosome II, section 87 of 107 of the
            complete sequence
          Length = 12530

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   ataaaatttctccaacaaac 57
            ||||||||||||||||||||
Sbjct: 2047 ataaaatttctccaacaaac 2066
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 557     ctgccgcgcgctggcggcgt 576
               ||||||||||||||||||||
Sbjct: 1970674 ctgccgcgcgctggcggcgt 1970693
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>gb|AC022469.5|AC022469 Homo sapiens chromosome 14 clone RP11-588P7 map 14q31, complete sequence
          Length = 159891

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    gagcaggagacagtgaagat 227
              ||||||||||||||||||||
Sbjct: 131724 gagcaggagacagtgaagat 131705
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>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence
          Length = 1162204

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     ataaaatttctccaacaaac 57
              ||||||||||||||||||||
Sbjct: 854133 ataaaatttctccaacaaac 854152
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>dbj|AP005179.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
           BAC clone:OSJNBb0084L07
          Length = 127992

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 499 gcgcctgcgccacctcccag 518
           ||||||||||||||||||||
Sbjct: 778 gcgcctgcgccacctcccag 797
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>ref|XM_315263.2| Anopheles gambiae str. PEST ENSANGP00000022295 (ENSANGG00000019806),
            partial mRNA
          Length = 5865

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 400  gctgccagagagcagagaag 419
            ||||||||||||||||||||
Sbjct: 4665 gctgccagagagcagagaag 4684
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>dbj|AP004384.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0506C07
          Length = 123451

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   gcgcctgcgccacctcccag 518
             ||||||||||||||||||||
Sbjct: 90241 gcgcctgcgccacctcccag 90260
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>gb|AC007257.9|AC007257 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone
             BACR24A22, complete sequence
          Length = 183007

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   gtgttgagcttccaaacacc 283
             ||||||||||||||||||||
Sbjct: 94872 gtgttgagcttccaaacacc 94853
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>gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34 of 83 of the complete
              sequence
          Length = 271507

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    gtgttgagcttccaaacacc 283
              ||||||||||||||||||||
Sbjct: 171833 gtgttgagcttccaaacacc 171852
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>gb|AC122284.5| Mus musculus BAC clone RP23-246A5 from 6, complete sequence
          Length = 189521

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 517   aggctttctgccccttccag 536
             ||||||||||||||||||||
Sbjct: 19559 aggctttctgccccttccag 19578
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>gb|AC124527.5| Mus musculus BAC clone RP23-411B11 from 1, complete sequence
          Length = 189288

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  caaggggcattacatcaagg 177
            ||||||||||||||||||||
Sbjct: 4859 caaggggcattacatcaagg 4878
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>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence,
              strain 2308
          Length = 1156948

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     ataaaatttctccaacaaac 57
              ||||||||||||||||||||
Sbjct: 854112 ataaaatttctccaacaaac 854131
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>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence
          Length = 124602

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 458   catccacatcataaaacccatcat 481
             |||||||||||| |||||||||||
Sbjct: 82256 catccacatcatcaaacccatcat 82279
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>dbj|AP004483.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT13O04, TM0016,
              complete sequence
          Length = 122116

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 458    catccacatcataaaacccatcat 481
              |||||||||||| |||||||||||
Sbjct: 120394 catccacatcatcaaacccatcat 120417


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,494,792
Number of Sequences: 3902068
Number of extensions: 5494792
Number of successful extensions: 102364
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101816
Number of HSP's gapped (non-prelim): 543
length of query: 605
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 582
effective length of database: 17,143,297,704
effective search space: 9977399263728
effective search space used: 9977399263728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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