ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16g17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_466278.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.14
2emb|BX322784.3| Human DNA sequence from clone RP11-3D23 on chrom... 46 0.14
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
4dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
5dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
6ref|NM_192726.1| Oryza sativa (japonica cultivar-group), predic... 44 0.57
7gb|BC060494.1| Xenopus laevis hypothetical protein MGC68827, mRN... 44 0.57
8emb|AL607038.3| Human DNA sequence from clone RP11-292B14 on chr... 44 0.57
9tpg|BK001016.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-gr... 44 0.57
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.57
11dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.57
12dbj|AK107616.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.57
13emb|AJ535044.1|OSA535044 Oryza sativa (japonica cultivar-group) ... 44 0.57
14emb|CR847563.12| Zebrafish DNA sequence from clone CH211-202H14 ... 42 2.2
15emb|AL158065.7| Human DNA sequence from clone RP11-64I8 on chrom... 42 2.2
16gb|AC099774.6| Oryza sativa chromosome 10 BAC OSJNBa0073L20 geno... 42 2.2
17dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
18gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.2
19ref|XM_483797.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.9
20gb|AC004763.1| Homo sapiens chromosome 5, P1 clone 854b11 (LBNL ... 40 8.9
21gb|AC159980.10| Mus musculus chromosome 3, clone RP24-171D20, co... 40 8.9
22gb|AY510087.1| Staphylococcus capitis serine-aspartate repeat fa... 40 8.9
23emb|BX957253.12| Zebrafish DNA sequence from clone DKEY-234L14 i... 40 8.9
24emb|AL354981.41| Human DNA sequence from clone RP11-696J10 on ch... 40 8.9
25emb|CR380958.1| Candida glabrata strain CBS138 chromosome L comp... 40 8.9
26gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 40 8.9
27emb|AJ786365.1| Paracentrotus lividus partial mRNA for 7a fibril... 40 8.9
28gb|AC138449.10| Medicago truncatula clone mth2-14o23, complete s... 40 8.9
29dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 8.9
30gb|AC149206.2| Medicago truncatula chromosome 2 BAC clone mte1-4... 40 8.9
31gb|AC154596.2| Mus musculus BAC clone RP23-354C17 from chromosom... 40 8.9
32dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
33dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
34gb|AY396077.1| Ponera striata voucher FLAS 198268 maturase K (ma... 40 8.9
35dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
36gb|AC002428.1|AC002428 Human BAC clone GS1-39E22 from 5q31, comp... 40 8.9
37emb|CR391908.15| Zebrafish DNA sequence from clone DKEY-225E11 i... 40 8.9
38emb|BX897668.12| Zebrafish DNA sequence from clone CH211-13H4 in... 40 8.9
39dbj|AK063290.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.9
40emb|AL954657.14| Zebrafish DNA sequence from clone CH211-223E21 ... 40 8.9
41dbj|AB007546.1| Homo sapiens gene for LECT2, complete cds 40 8.9
42emb|AL928597.19| Mouse DNA sequence from clone RP23-373N5 on chr... 40 8.9
43gb|AC163731.2| Mus musculus BAC clone RP23-380F10 from chromosom... 40 8.9
44emb|AL683891.11| Mouse DNA sequence from clone RP23-435E7 on chr... 40 8.9

>ref|XM_466278.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1893

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 561  ttgtcatcccttccactgtctgaatttgaatcaaa 595
            |||| |||| |||||||||||||||||||| ||||
Sbjct: 1304 ttgtgatccattccactgtctgaatttgaaccaaa 1270



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 369  ttccatgtcggctcctccaagtctgagg 396
            |||||| | |||||||||||||||||||
Sbjct: 1595 ttccattttggctcctccaagtctgagg 1568



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>emb|BX322784.3| Human DNA sequence from clone RP11-3D23 on chromosome X Contains a
             Sjogren syndrome antigen B (autoantigen La) (SSB)
             pseudogene, complete sequence
          Length = 169147

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 346   tagcttccttcttttttctgggg 368
             |||||||||||||||||||||||
Sbjct: 67245 tagcttccttcttttttctgggg 67267



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 561      ttgtcatcccttccactgtctgaatttgaatcaaa 595
                |||| |||| |||||||||||||||||||| ||||
Sbjct: 21440377 ttgtgatccattccactgtctgaatttgaaccaaa 21440411



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 369      ttccatgtcggctcctccaagtctgagg 396
                |||||| | |||||||||||||||||||
Sbjct: 21440086 ttccattttggctcctccaagtctgagg 21440113



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>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0020C11
          Length = 163328

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 561   ttgtcatcccttccactgtctgaatttgaatcaaa 595
             |||| |||| |||||||||||||||||||| ||||
Sbjct: 35304 ttgtgatccattccactgtctgaatttgaaccaaa 35338



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 369   ttccatgtcggctcctccaagtctgagg 396
             |||||| | |||||||||||||||||||
Sbjct: 35013 ttccattttggctcctccaagtctgagg 35040



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>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1712_E04
          Length = 110098

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 561    ttgtcatcccttccactgtctgaatttgaatcaaa 595
              |||| |||| |||||||||||||||||||| ||||
Sbjct: 100330 ttgtgatccattccactgtctgaatttgaaccaaa 100364



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 369    ttccatgtcggctcctccaagtctgagg 396
              |||||| | |||||||||||||||||||
Sbjct: 100039 ttccattttggctcctccaagtctgagg 100066



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>ref|NM_192726.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4344

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 199 ctcccctcggccgccgccctcctcca 224
           |||||||| |||||||||||||||||
Sbjct: 240 ctcccctccgccgccgccctcctcca 215



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>gb|BC060494.1| Xenopus laevis hypothetical protein MGC68827, mRNA (cDNA clone
           MGC:68827 IMAGE:4633786), complete cds
          Length = 3061

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 568 cccttccactgtctgaatttga 589
           ||||||||||||||||||||||
Sbjct: 623 cccttccactgtctgaatttga 602



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>emb|AL607038.3| Human DNA sequence from clone RP11-292B14 on chromosome 13 Contains
             part of the UGCGL2 gene for UDP-glucose ceramide
             glucosyltransferase-like 2 (HUGT2 FLJ10873 FLJ11485) and a
             CpG island, complete sequence
          Length = 63266

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 215   ccctcctccatcttctctgttg 236
             ||||||||||||||||||||||
Sbjct: 43536 ccctcctccatcttctctgttg 43557



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>tpg|BK001016.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) isolate
           P0410E03.6 PDR2 ABC transporter (pdr2) gene, complete
           cds
          Length = 8415

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 199 ctcccctcggccgccgccctcctcca 224
           |||||||| |||||||||||||||||
Sbjct: 258 ctcccctccgccgccgccctcctcca 233



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 199      ctcccctcggccgccgccctcctcca 224
                |||||||| |||||||||||||||||
Sbjct: 24069475 ctcccctccgccgccgccctcctcca 24069500



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>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0410E03
          Length = 164839

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 199   ctcccctcggccgccgccctcctcca 224
             |||||||| |||||||||||||||||
Sbjct: 45297 ctcccctccgccgccgccctcctcca 45322



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>dbj|AK107616.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-C11, full
           insert sequence
          Length = 1535

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 213 cgccctcctccatcttctctgt 234
           ||||||||||||||||||||||
Sbjct: 998 cgccctcctccatcttctctgt 977



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>emb|AJ535044.1|OSA535044 Oryza sativa (japonica cultivar-group) pdr11 gene for PDR-like ABC
           transporter, exons 1-21
          Length = 8415

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 199 ctcccctcggccgccgccctcctcca 224
           |||||||| |||||||||||||||||
Sbjct: 258 ctcccctccgccgccgccctcctcca 233



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>emb|CR847563.12| Zebrafish DNA sequence from clone CH211-202H14 in linkage group 11,
              complete sequence
          Length = 204337

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 17     cgtttggtcatacagtagtta 37
              |||||||||||||||||||||
Sbjct: 107067 cgtttggtcatacagtagtta 107047



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>emb|AL158065.7| Human DNA sequence from clone RP11-64I8 on chromosome 13, complete
             sequence
          Length = 68301

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 350   ttccttcttttttctggggtt 370
             |||||||||||||||||||||
Sbjct: 10923 ttccttcttttttctggggtt 10903



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>gb|AC099774.6| Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete
             sequence
          Length = 147651

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 238   cgttcatcacaggacgagtactgtc 262
             ||||||||||||||| |||||||||
Sbjct: 83241 cgttcatcacaggacaagtactgtc 83265



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 238     cgttcatcacaggacgagtactgtc 262
               ||||||||||||||| |||||||||
Sbjct: 8692600 cgttcatcacaggacaagtactgtc 8692624



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 238     cgttcatcacaggacgagtactgtc 262
               ||||||||||||||| |||||||||
Sbjct: 8697739 cgttcatcacaggacaagtactgtc 8697763



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>ref|XM_483797.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1444

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 208 gccgccgccctcctccatct 227
           ||||||||||||||||||||
Sbjct: 127 gccgccgccctcctccatct 108



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>gb|AC004763.1| Homo sapiens chromosome 5, P1 clone 854b11 (LBNL H44), complete
            sequence
          Length = 87050

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 502  cacctcccctgttctcactt 521
            ||||||||||||||||||||
Sbjct: 4076 cacctcccctgttctcactt 4057



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>gb|AC159980.10| Mus musculus chromosome 3, clone RP24-171D20, complete sequence
          Length = 153366

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   ccctcctccatcttctctgt 234
             ||||||||||||||||||||
Sbjct: 86586 ccctcctccatcttctctgt 86605



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>gb|AY510087.1| Staphylococcus capitis serine-aspartate repeat family protein
           (sdrZL) gene, complete cds
          Length = 1698

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 574 cactgtctgaatttgaatca 593
           ||||||||||||||||||||
Sbjct: 490 cactgtctgaatttgaatca 471



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>emb|BX957253.12| Zebrafish DNA sequence from clone DKEY-234L14 in linkage group 7,
              complete sequence
          Length = 197310

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 65     actcttaacaaacagtacatttta 88
              ||||||||||||||| ||||||||
Sbjct: 103041 actcttaacaaacagaacatttta 103064



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>emb|AL354981.41| Human DNA sequence from clone RP11-696J10 on chromosome 9 Contains part
             of the ASTN2 gene for astrotactin 2 (KIAA0634), complete
             sequence
          Length = 117488

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 573   ccactgtctgaatttgaatc 592
             ||||||||||||||||||||
Sbjct: 57775 ccactgtctgaatttgaatc 57756



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>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence
          Length = 1440588

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 571     ttccactgtctgaatttgaa 590
               ||||||||||||||||||||
Sbjct: 1184724 ttccactgtctgaatttgaa 1184743



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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 235     tggcgttcatcacaggacga 254
               ||||||||||||||||||||
Sbjct: 1946632 tggcgttcatcacaggacga 1946651



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>emb|AJ786365.1| Paracentrotus lividus partial mRNA for 7a fibrillar collagen
           (coll7a gene)
          Length = 1112

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 285 ccaccactcctgaacctact 304
           ||||||||||||||||||||
Sbjct: 320 ccaccactcctgaacctact 339



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>gb|AC138449.10| Medicago truncatula clone mth2-14o23, complete sequence
          Length = 30085

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 84  ttttatctaagttctgatgt 103
           ||||||||||||||||||||
Sbjct: 33  ttttatctaagttctgatgt 52



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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 613     cctttcttaccacattgcca 632
               ||||||||||||||||||||
Sbjct: 2752984 cctttcttaccacattgcca 2753003



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>gb|AC149206.2| Medicago truncatula chromosome 2 BAC clone mte1-49n15, complete
             sequence
          Length = 113539

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    ttttatctaagttctgatgt 103
             ||||||||||||||||||||
Sbjct: 13604 ttttatctaagttctgatgt 13585



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>gb|AC154596.2| Mus musculus BAC clone RP23-354C17 from chromosome 17, complete sequence
          Length = 208266

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 211    gccgccctcctccatcttctctgt 234
              |||||||||| |||||||||||||
Sbjct: 188283 gccgccctcccccatcttctctgt 188260



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 208      gccgccgccctcctccatct 227
                ||||||||||||||||||||
Sbjct: 28149296 gccgccgccctcctccatct 28149315



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>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0604E01
          Length = 159049

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 208    gccgccgccctcctccatct 227
              ||||||||||||||||||||
Sbjct: 146791 gccgccgccctcctccatct 146810



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>gb|AY396077.1| Ponera striata voucher FLAS 198268 maturase K (matK) gene, partial
           cds; chloroplast
          Length = 1417

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 ttccttcttttttctggggt 369
           ||||||||||||||||||||
Sbjct: 915 ttccttcttttttctggggt 934



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>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0543D10
          Length = 134866

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   gccgccgccctcctccatct 227
             ||||||||||||||||||||
Sbjct: 32769 gccgccgccctcctccatct 32788



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>gb|AC002428.1|AC002428 Human BAC clone GS1-39E22 from 5q31, complete sequence
          Length = 143875

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 502   cacctcccctgttctcactt 521
             ||||||||||||||||||||
Sbjct: 64230 cacctcccctgttctcactt 64211



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>emb|CR391908.15| Zebrafish DNA sequence from clone DKEY-225E11 in linkage group 19,
             complete sequence
          Length = 171679

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    acagtacattttatctaagttctg 99
             |||||||||||||||| |||||||
Sbjct: 98523 acagtacattttatcttagttctg 98546



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>emb|BX897668.12| Zebrafish DNA sequence from clone CH211-13H4 in linkage group 4,
             complete sequence
          Length = 42562

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    ttggtcatacagtagttagcatac 43
             ||||||| ||||||||||||||||
Sbjct: 20667 ttggtcagacagtagttagcatac 20644



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>dbj|AK063290.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E02, full
           insert sequence
          Length = 1444

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 208 gccgccgccctcctccatct 227
           ||||||||||||||||||||
Sbjct: 127 gccgccgccctcctccatct 108



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>emb|AL954657.14| Zebrafish DNA sequence from clone CH211-223E21 in linkage group 4,
             complete sequence
          Length = 200352

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    ttggtcatacagtagttagcatac 43
             ||||||| ||||||||||||||||
Sbjct: 19521 ttggtcagacagtagttagcatac 19498



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>dbj|AB007546.1| Homo sapiens gene for LECT2, complete cds
          Length = 11134

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 502  cacctcccctgttctcactt 521
            ||||||||||||||||||||
Sbjct: 1479 cacctcccctgttctcactt 1460



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>emb|AL928597.19| Mouse DNA sequence from clone RP23-373N5 on chromosome 4, complete
             sequence
          Length = 163961

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   cctcctccatcttctctgtt 235
             ||||||||||||||||||||
Sbjct: 23084 cctcctccatcttctctgtt 23103



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>gb|AC163731.2| Mus musculus BAC clone RP23-380F10 from chromosome 17, complete sequence
          Length = 185201

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 211    gccgccctcctccatcttctctgt 234
              |||||||||| |||||||||||||
Sbjct: 121146 gccgccctcccccatcttctctgt 121169



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>emb|AL683891.11| Mouse DNA sequence from clone RP23-435E7 on chromosome 3, complete
              sequence
          Length = 162394

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    ccctcctccatcttctctgt 234
              ||||||||||||||||||||
Sbjct: 123637 ccctcctccatcttctctgt 123656


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,840,724
Number of Sequences: 3902068
Number of extensions: 5840724
Number of successful extensions: 122689
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122360
Number of HSP's gapped (non-prelim): 329
length of query: 651
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 628
effective length of database: 17,143,297,704
effective search space: 10765990958112
effective search space used: 10765990958112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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