Clone Name | rbasd16g17 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_466278.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1893 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 561 ttgtcatcccttccactgtctgaatttgaatcaaa 595 |||| |||| |||||||||||||||||||| |||| Sbjct: 1304 ttgtgatccattccactgtctgaatttgaaccaaa 1270 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 369 ttccatgtcggctcctccaagtctgagg 396 |||||| | ||||||||||||||||||| Sbjct: 1595 ttccattttggctcctccaagtctgagg 1568
>emb|BX322784.3| Human DNA sequence from clone RP11-3D23 on chromosome X Contains a Sjogren syndrome antigen B (autoantigen La) (SSB) pseudogene, complete sequence Length = 169147 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 346 tagcttccttcttttttctgggg 368 ||||||||||||||||||||||| Sbjct: 67245 tagcttccttcttttttctgggg 67267
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 561 ttgtcatcccttccactgtctgaatttgaatcaaa 595 |||| |||| |||||||||||||||||||| |||| Sbjct: 21440377 ttgtgatccattccactgtctgaatttgaaccaaa 21440411 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 369 ttccatgtcggctcctccaagtctgagg 396 |||||| | ||||||||||||||||||| Sbjct: 21440086 ttccattttggctcctccaagtctgagg 21440113
>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020C11 Length = 163328 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 561 ttgtcatcccttccactgtctgaatttgaatcaaa 595 |||| |||| |||||||||||||||||||| |||| Sbjct: 35304 ttgtgatccattccactgtctgaatttgaaccaaa 35338 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 369 ttccatgtcggctcctccaagtctgagg 396 |||||| | ||||||||||||||||||| Sbjct: 35013 ttccattttggctcctccaagtctgagg 35040
>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1712_E04 Length = 110098 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 561 ttgtcatcccttccactgtctgaatttgaatcaaa 595 |||| |||| |||||||||||||||||||| |||| Sbjct: 100330 ttgtgatccattccactgtctgaatttgaaccaaa 100364 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 369 ttccatgtcggctcctccaagtctgagg 396 |||||| | ||||||||||||||||||| Sbjct: 100039 ttccattttggctcctccaagtctgagg 100066
>ref|NM_192726.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4344 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 199 ctcccctcggccgccgccctcctcca 224 |||||||| ||||||||||||||||| Sbjct: 240 ctcccctccgccgccgccctcctcca 215
>gb|BC060494.1| Xenopus laevis hypothetical protein MGC68827, mRNA (cDNA clone MGC:68827 IMAGE:4633786), complete cds Length = 3061 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 568 cccttccactgtctgaatttga 589 |||||||||||||||||||||| Sbjct: 623 cccttccactgtctgaatttga 602
>emb|AL607038.3| Human DNA sequence from clone RP11-292B14 on chromosome 13 Contains part of the UGCGL2 gene for UDP-glucose ceramide glucosyltransferase-like 2 (HUGT2 FLJ10873 FLJ11485) and a CpG island, complete sequence Length = 63266 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 215 ccctcctccatcttctctgttg 236 |||||||||||||||||||||| Sbjct: 43536 ccctcctccatcttctctgttg 43557
>tpg|BK001016.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) isolate P0410E03.6 PDR2 ABC transporter (pdr2) gene, complete cds Length = 8415 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 199 ctcccctcggccgccgccctcctcca 224 |||||||| ||||||||||||||||| Sbjct: 258 ctcccctccgccgccgccctcctcca 233
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 ctcccctcggccgccgccctcctcca 224 |||||||| ||||||||||||||||| Sbjct: 24069475 ctcccctccgccgccgccctcctcca 24069500
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 ctcccctcggccgccgccctcctcca 224 |||||||| ||||||||||||||||| Sbjct: 45297 ctcccctccgccgccgccctcctcca 45322
>dbj|AK107616.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-C11, full insert sequence Length = 1535 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 213 cgccctcctccatcttctctgt 234 |||||||||||||||||||||| Sbjct: 998 cgccctcctccatcttctctgt 977
>emb|AJ535044.1|OSA535044 Oryza sativa (japonica cultivar-group) pdr11 gene for PDR-like ABC transporter, exons 1-21 Length = 8415 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 199 ctcccctcggccgccgccctcctcca 224 |||||||| ||||||||||||||||| Sbjct: 258 ctcccctccgccgccgccctcctcca 233
>emb|CR847563.12| Zebrafish DNA sequence from clone CH211-202H14 in linkage group 11, complete sequence Length = 204337 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 cgtttggtcatacagtagtta 37 ||||||||||||||||||||| Sbjct: 107067 cgtttggtcatacagtagtta 107047
>emb|AL158065.7| Human DNA sequence from clone RP11-64I8 on chromosome 13, complete sequence Length = 68301 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 ttccttcttttttctggggtt 370 ||||||||||||||||||||| Sbjct: 10923 ttccttcttttttctggggtt 10903
>gb|AC099774.6| Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence Length = 147651 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 cgttcatcacaggacgagtactgtc 262 ||||||||||||||| ||||||||| Sbjct: 83241 cgttcatcacaggacaagtactgtc 83265
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 cgttcatcacaggacgagtactgtc 262 ||||||||||||||| ||||||||| Sbjct: 8692600 cgttcatcacaggacaagtactgtc 8692624
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 cgttcatcacaggacgagtactgtc 262 ||||||||||||||| ||||||||| Sbjct: 8697739 cgttcatcacaggacaagtactgtc 8697763
>ref|XM_483797.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1444 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gccgccgccctcctccatct 227 |||||||||||||||||||| Sbjct: 127 gccgccgccctcctccatct 108
>gb|AC004763.1| Homo sapiens chromosome 5, P1 clone 854b11 (LBNL H44), complete sequence Length = 87050 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 cacctcccctgttctcactt 521 |||||||||||||||||||| Sbjct: 4076 cacctcccctgttctcactt 4057
>gb|AC159980.10| Mus musculus chromosome 3, clone RP24-171D20, complete sequence Length = 153366 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 ccctcctccatcttctctgt 234 |||||||||||||||||||| Sbjct: 86586 ccctcctccatcttctctgt 86605
>gb|AY510087.1| Staphylococcus capitis serine-aspartate repeat family protein (sdrZL) gene, complete cds Length = 1698 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 574 cactgtctgaatttgaatca 593 |||||||||||||||||||| Sbjct: 490 cactgtctgaatttgaatca 471
>emb|BX957253.12| Zebrafish DNA sequence from clone DKEY-234L14 in linkage group 7, complete sequence Length = 197310 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 actcttaacaaacagtacatttta 88 ||||||||||||||| |||||||| Sbjct: 103041 actcttaacaaacagaacatttta 103064
>emb|AL354981.41| Human DNA sequence from clone RP11-696J10 on chromosome 9 Contains part of the ASTN2 gene for astrotactin 2 (KIAA0634), complete sequence Length = 117488 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 573 ccactgtctgaatttgaatc 592 |||||||||||||||||||| Sbjct: 57775 ccactgtctgaatttgaatc 57756
>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence Length = 1440588 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 ttccactgtctgaatttgaa 590 |||||||||||||||||||| Sbjct: 1184724 ttccactgtctgaatttgaa 1184743
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tggcgttcatcacaggacga 254 |||||||||||||||||||| Sbjct: 1946632 tggcgttcatcacaggacga 1946651
>emb|AJ786365.1| Paracentrotus lividus partial mRNA for 7a fibrillar collagen (coll7a gene) Length = 1112 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ccaccactcctgaacctact 304 |||||||||||||||||||| Sbjct: 320 ccaccactcctgaacctact 339
>gb|AC138449.10| Medicago truncatula clone mth2-14o23, complete sequence Length = 30085 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 ttttatctaagttctgatgt 103 |||||||||||||||||||| Sbjct: 33 ttttatctaagttctgatgt 52
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 613 cctttcttaccacattgcca 632 |||||||||||||||||||| Sbjct: 2752984 cctttcttaccacattgcca 2753003
>gb|AC149206.2| Medicago truncatula chromosome 2 BAC clone mte1-49n15, complete sequence Length = 113539 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 ttttatctaagttctgatgt 103 |||||||||||||||||||| Sbjct: 13604 ttttatctaagttctgatgt 13585
>gb|AC154596.2| Mus musculus BAC clone RP23-354C17 from chromosome 17, complete sequence Length = 208266 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 gccgccctcctccatcttctctgt 234 |||||||||| ||||||||||||| Sbjct: 188283 gccgccctcccccatcttctctgt 188260
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gccgccgccctcctccatct 227 |||||||||||||||||||| Sbjct: 28149296 gccgccgccctcctccatct 28149315
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0604E01 Length = 159049 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gccgccgccctcctccatct 227 |||||||||||||||||||| Sbjct: 146791 gccgccgccctcctccatct 146810
>gb|AY396077.1| Ponera striata voucher FLAS 198268 maturase K (matK) gene, partial cds; chloroplast Length = 1417 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ttccttcttttttctggggt 369 |||||||||||||||||||| Sbjct: 915 ttccttcttttttctggggt 934
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0543D10 Length = 134866 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gccgccgccctcctccatct 227 |||||||||||||||||||| Sbjct: 32769 gccgccgccctcctccatct 32788
>gb|AC002428.1|AC002428 Human BAC clone GS1-39E22 from 5q31, complete sequence Length = 143875 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 cacctcccctgttctcactt 521 |||||||||||||||||||| Sbjct: 64230 cacctcccctgttctcactt 64211
>emb|CR391908.15| Zebrafish DNA sequence from clone DKEY-225E11 in linkage group 19, complete sequence Length = 171679 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 acagtacattttatctaagttctg 99 |||||||||||||||| ||||||| Sbjct: 98523 acagtacattttatcttagttctg 98546
>emb|BX897668.12| Zebrafish DNA sequence from clone CH211-13H4 in linkage group 4, complete sequence Length = 42562 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 ttggtcatacagtagttagcatac 43 ||||||| |||||||||||||||| Sbjct: 20667 ttggtcagacagtagttagcatac 20644
>dbj|AK063290.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E02, full insert sequence Length = 1444 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gccgccgccctcctccatct 227 |||||||||||||||||||| Sbjct: 127 gccgccgccctcctccatct 108
>emb|AL954657.14| Zebrafish DNA sequence from clone CH211-223E21 in linkage group 4, complete sequence Length = 200352 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 ttggtcatacagtagttagcatac 43 ||||||| |||||||||||||||| Sbjct: 19521 ttggtcagacagtagttagcatac 19498
>dbj|AB007546.1| Homo sapiens gene for LECT2, complete cds Length = 11134 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 cacctcccctgttctcactt 521 |||||||||||||||||||| Sbjct: 1479 cacctcccctgttctcactt 1460
>emb|AL928597.19| Mouse DNA sequence from clone RP23-373N5 on chromosome 4, complete sequence Length = 163961 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 cctcctccatcttctctgtt 235 |||||||||||||||||||| Sbjct: 23084 cctcctccatcttctctgtt 23103
>gb|AC163731.2| Mus musculus BAC clone RP23-380F10 from chromosome 17, complete sequence Length = 185201 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 gccgccctcctccatcttctctgt 234 |||||||||| ||||||||||||| Sbjct: 121146 gccgccctcccccatcttctctgt 121169
>emb|AL683891.11| Mouse DNA sequence from clone RP23-435E7 on chromosome 3, complete sequence Length = 162394 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 ccctcctccatcttctctgt 234 |||||||||||||||||||| Sbjct: 123637 ccctcctccatcttctctgt 123656 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,840,724 Number of Sequences: 3902068 Number of extensions: 5840724 Number of successful extensions: 122689 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122360 Number of HSP's gapped (non-prelim): 329 length of query: 651 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 628 effective length of database: 17,143,297,704 effective search space: 10765990958112 effective search space used: 10765990958112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)