ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16g14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ019635.1| Triticum aestivum U2AF large subunit (U2AF65) mRNA, complete cds Length = 1786 Score = 1070 bits (540), Expect = 0.0 Identities = 605/626 (96%), Gaps = 1/626 (0%) Strand = Plus / Minus Query: 1 tacaagnaagctcaactagnaaggggaaacgttgctgtaaatcgaacgaactacacaaaa 60 |||||| |||||| ||||| ||||| ||||||||||||||||||||| ||||||| ||| Sbjct: 1732 tacaagaaagctcgactag-aagggaaaacgttgctgtaaatcgaacaaactacagaaag 1674 Query: 61 cactattggcattggaaaagagagataatttatgctgccgcatcatagtcctcttcagca 120 |||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 1673 cactattgtcattggaaaagagagataatttatgctgccgcgtcatagtcctcatcagca 1614 Query: 121 aacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatgc 180 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1613 aacttgttctcggggtagaagaccgcaacaactgggtttccaccgaatttccttccatgc 1554 Query: 181 atcgccgtctttgctttggtggagccatcaacatctgcatactctaagaacacctttcca 240 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1553 atcgccgtctttgctttggtggaaccatcaacatctgcatactctaagaacacctttcca 1494 Query: 241 actccagaaactggctctccactcagatgagggcgcgggatgacaactttcaccaagtta 300 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1493 actccagaaactggctctccactcggatgagggcgcgggatgacaactttcaccaagtta 1434 Query: 301 ccatatttcccagcttccaacctcatgtcttccataatgtcctcatattcttcatcatct 360 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1433 ccatatttcccagcttccaacctcatgtcctccataatgtcctcatattcttcatcatcc 1374 Query: 361 tttaattcatcagcagtaactacctgggtcaggcatacaacctttgtaggaagtgcacca 420 |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct: 1373 tttaattcatcagcagtaactacctgggtcaggcatacaacctttgtagggagcgctcca 1314 Query: 421 acttgatacacaagtttctgtaactgcacctgctgctgtgcctgcaaaaggatattttcc 480 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1313 acttgatacacaagtttctgtaactgcacctgctgctgtgcctgcaacaggatattttcc 1254 Query: 481 tgctctggtctangttgggctgagccctggtttgctcgtctgaccgtaagagttttgtct 540 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1253 tgctctggtctaggttgggctgagccctggtttgctcgtctgaccgtaagagttttgtct 1194 Query: 541 cccatcttgataccatttagagcagcgcaggctatgtcagtgacattgaggtcctggtac 600 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1193 cccatcttgataccatttagagcagcgcaggctatgtcagtgacattgaggtcctggtag 1134 Query: 601 acacagaacgcatagccctttgagtt 626 |||||||||||||||||||||||||| Sbjct: 1133 acacagaacgcatagccctttgagtt 1108
>dbj|AK066311.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068A09, full insert sequence Length = 2841 Score = 484 bits (244), Expect = e-133 Identities = 441/507 (86%) Strand = Plus / Minus Query: 120 aaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatg 179 |||||||||||| |||||||| || || |||||||| |||||||| || ||||||||||| Sbjct: 2706 aaacttgttctcagggtagaacactgcgacaactggatttccaccgaacttccttccatg 2647 Query: 180 catcgccgtctttgctttggtggagccatcaacatctgcatactctaagaacacctttcc 239 ||| ||||||||||||||||||| ||| || |||||||||||||| ||||| |||||||| Sbjct: 2646 cattgccgtctttgctttggtggcgccgtccacatctgcatactccaagaaaacctttcc 2587 Query: 240 aactccagaaactggctctccactcagatgagggcgcgggatgacaactttcaccaagtt 299 |||||||| |||||| |||||| ||| |||||| ||||||||||| || | || || Sbjct: 2586 aactccagcaactggtaatccactaggatcagggcgagggatgacaaccttaatcagatt 2527 Query: 300 accatatttcccagcttccaacctcatgtcttccataatgtcctcatattcttcatcatc 359 ||||||||| || |||||||| |||||||| ||||||||||| ||||| || || ||||| Sbjct: 2526 accatatttgcctgcttccaatctcatgtcctccataatgtcttcatactcctcgtcatc 2467 Query: 360 ttttaattcatcagcagtaactacctgggtcaggcatacaacctttgtaggaagtgcacc 419 ||||||||||||||| | ||| |||||||||||||| |||||||||||||| ||||| || Sbjct: 2466 ttttaattcatcagccgaaaccacctgggtcaggcacacaacctttgtagggagtgctcc 2407 Query: 420 aacttgatacacaagtttctgtaactgcacctgctgctgtgcctgcaaaaggatattttc 479 ||||||||| |||||||||||||| ||||| || |||||||||||||| |||||| |||| Sbjct: 2406 aacttgatatacaagtttctgtaattgcacttgttgctgtgcctgcaacaggatactttc 2347 Query: 480 ctgctctggtctangttgggctgagccctggtttgctcgtctgaccgtaagagttttgtc 539 ||| ||||||||| | || || | ||||||||||| | ||| || || || |||||||| Sbjct: 2346 ctgttctggtctaggctgagccgctccctggtttgcccttctaacagttagggttttgtc 2287 Query: 540 tcccatcttgataccatttagagcagcgcaggctatgtcagtgacattgaggtcctggta 599 |||||||||||| ||||| |||||||| ||||||||||||||||||||||| || ||||| Sbjct: 2286 tcccatcttgatgccattcagagcagcacaggctatgtcagtgacattgagatcttggta 2227 Query: 600 cacacagaacgcatagccctttgagtt 626 |||||||| ||||||||||||||||| Sbjct: 2226 gacacagaatgcatagccctttgagtt 2200
>gb|AY111048.1| Zea mays CL3975_1 mRNA sequence Length = 974 Score = 442 bits (223), Expect = e-121 Identities = 436/509 (85%) Strand = Plus / Minus Query: 118 gcaaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttcca 177 |||||||||| ||| | ||| |||| || || |||||||| |||||||||||||||||| Sbjct: 659 gcaaacttgtcctccgcatagcagacagcgaccactgggttcccaccaaatttccttcca 600 Query: 178 tgcatcgccgtctttgctttggtggagccatcaacatctgcatactctaagaacaccttt 237 |||| ||| ||||||||||||| | ||||| | ||||||||| || | ||||||||| Sbjct: 599 tgcagcgctgtctttgctttggcagcaccatcgatatctgcatattccaggaacaccttc 540 Query: 238 ccaactccagaaactggctctccactcagatgagggcgcgggatgacaactttcaccaag 297 |||||||| |||||||| || || | | |||||| ||||||| |||||||||||| Sbjct: 539 ccaactcctacaactggctgcccgctggggtcagggcgtgggatgataactttcaccaaa 480 Query: 298 ttaccatatttcccagcttccaacctcatgtcttccataatgtcctcatattcttcatca 357 ||||||||||| || ||||| | ||||||||||||||||||||||||||| ||||||||| Sbjct: 479 ttaccatatttgcctgcttctagcctcatgtcttccataatgtcctcatactcttcatca 420 Query: 358 tcttttaattcatcagcagtaactacctgggtcaggcatacaacctttgtaggaagtgca 417 ||||| |||||||| ||||| || ||||| || ||||||||||||||||||||||| || Sbjct: 419 tctttcaattcatctgcagttaccacctgcgtgaggcatacaacctttgtaggaagcgct 360 Query: 418 ccaacttgatacacaagtttctgtaactgcacctgctgctgtgcctgcaaaaggatattt 477 ||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||| || Sbjct: 359 ccaacttgatacacaagtttctgcaactgcacctgttgttgtgcctgcaataggatactt 300 Query: 478 tcctgctctggtctangttgggctgagccctggtttgctcgtctgaccgtaagagttttg 537 |||||||||||||| | || | || ||||||||||||||||| ||||| |||||| Sbjct: 299 tcctgctctggtctgggctgagatgnnnnntggtttgctcgtctgacagtaagggttttg 240 Query: 538 tctcccatcttgataccatttagagcagcgcaggctatgtcagtgacattgaggtcctgg 597 || |||||||||||||||||||| ||||| || || |||||||||||| ||||||||||| Sbjct: 239 tcacccatcttgataccatttagtgcagcacaagcgatgtcagtgacagtgaggtcctgg 180 Query: 598 tacacacagaacgcatagccctttgagtt 626 || |||||||| |||||||| |||||||| Sbjct: 179 taaacacagaatgcatagccttttgagtt 151
>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0064H09, complete sequence Length = 146742 Score = 178 bits (90), Expect = 1e-41 Identities = 164/189 (86%) Strand = Plus / Minus Query: 438 ctgtaactgcacctgctgctgtgcctgcaaaaggatattttcctgctctggtctangttg 497 |||||| ||||| || |||||||||||||| |||||| ||||||| ||||||||| | || Sbjct: 23148 ctgtaattgcacttgttgctgtgcctgcaacaggatactttcctgttctggtctaggctg 23089 Query: 498 ggctgagccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgataccatt 557 || | ||||||||||| | ||| || || || |||||||||||||||||||| ||||| Sbjct: 23088 agccgctccctggtttgcccttctaacagttagggttttgtctcccatcttgatgccatt 23029 Query: 558 tagagcagcgcaggctatgtcagtgacattgaggtcctggtacacacagaacgcatagcc 617 |||||||| ||||||||||||||||||||||| || ||||| |||||||| |||||||| Sbjct: 23028 cagagcagcacaggctatgtcagtgacattgagatcttggtagacacagaatgcatagcc 22969 Query: 618 ctttgagtt 626 ||||||||| Sbjct: 22968 ctttgagtt 22960 Score = 167 bits (84), Expect = 5e-38 Identities = 129/144 (89%) Strand = Plus / Minus Query: 298 ttaccatatttcccagcttccaacctcatgtcttccataatgtcctcatattcttcatca 357 ||||||||||| || |||||||| |||||||| ||||||||||| ||||| || || ||| Sbjct: 23399 ttaccatatttgcctgcttccaatctcatgtcctccataatgtcttcatactcctcgtca 23340 Query: 358 tcttttaattcatcagcagtaactacctgggtcaggcatacaacctttgtaggaagtgca 417 ||||||||||||||||| | ||| |||||||||||||| |||||||||||||| ||||| Sbjct: 23339 tcttttaattcatcagccgaaaccacctgggtcaggcacacaacctttgtagggagtgct 23280 Query: 418 ccaacttgatacacaagtttctgt 441 ||||||||||| |||||||||||| Sbjct: 23279 ccaacttgatatacaagtttctgt 23256 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 120 aaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatg 179 |||||||||||| |||||||| || ||||||||||| |||||||| || ||||||||||| Sbjct: 23869 aaacttgttctcagggtagaacactgcaacaactggatttccaccgaacttccttccatg 23810 Query: 180 catcgccgtctttgctttggtggagccatcaacatctgcatactctaagaacacct 235 ||| ||||||||||||||||||| ||| || |||||||||||||| ||||| |||| Sbjct: 23809 cattgccgtctttgctttggtggcgccgtccacatctgcatactccaagaaaacct 23754 Score = 48.1 bits (24), Expect = 0.035 Identities = 48/56 (85%) Strand = Plus / Minus Query: 232 acctttccaactccagaaactggctctccactcagatgagggcgcgggatgacaac 287 |||||||||||||||| |||||| |||||| ||| |||||| ||||||||||| Sbjct: 23681 acctttccaactccagcaactggtaatccactaggatcagggcgagggatgacaac 23626
>gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0082P17, complete sequence Length = 157539 Score = 178 bits (90), Expect = 1e-41 Identities = 164/189 (86%) Strand = Plus / Minus Query: 438 ctgtaactgcacctgctgctgtgcctgcaaaaggatattttcctgctctggtctangttg 497 |||||| ||||| || |||||||||||||| |||||| ||||||| ||||||||| | || Sbjct: 130766 ctgtaattgcacttgttgctgtgcctgcaacaggatactttcctgttctggtctaggctg 130707 Query: 498 ggctgagccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgataccatt 557 || | ||||||||||| | ||| || || || |||||||||||||||||||| ||||| Sbjct: 130706 agccgctccctggtttgcccttctaacagttagggttttgtctcccatcttgatgccatt 130647 Query: 558 tagagcagcgcaggctatgtcagtgacattgaggtcctggtacacacagaacgcatagcc 617 |||||||| ||||||||||||||||||||||| || ||||| |||||||| |||||||| Sbjct: 130646 cagagcagcacaggctatgtcagtgacattgagatcttggtagacacagaatgcatagcc 130587 Query: 618 ctttgagtt 626 ||||||||| Sbjct: 130586 ctttgagtt 130578 Score = 167 bits (84), Expect = 5e-38 Identities = 129/144 (89%) Strand = Plus / Minus Query: 298 ttaccatatttcccagcttccaacctcatgtcttccataatgtcctcatattcttcatca 357 ||||||||||| || |||||||| |||||||| ||||||||||| ||||| || || ||| Sbjct: 131017 ttaccatatttgcctgcttccaatctcatgtcctccataatgtcttcatactcctcgtca 130958 Query: 358 tcttttaattcatcagcagtaactacctgggtcaggcatacaacctttgtaggaagtgca 417 ||||||||||||||||| | ||| |||||||||||||| |||||||||||||| ||||| Sbjct: 130957 tcttttaattcatcagccgaaaccacctgggtcaggcacacaacctttgtagggagtgct 130898 Query: 418 ccaacttgatacacaagtttctgt 441 ||||||||||| |||||||||||| Sbjct: 130897 ccaacttgatatacaagtttctgt 130874 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 120 aaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatg 179 |||||||||||| |||||||| || ||||||||||| |||||||| || ||||||||||| Sbjct: 131487 aaacttgttctcagggtagaacactgcaacaactggatttccaccgaacttccttccatg 131428 Query: 180 catcgccgtctttgctttggtggagccatcaacatctgcatactctaagaacacct 235 ||| ||||||||||||||||||| ||| || |||||||||||||| ||||| |||| Sbjct: 131427 cattgccgtctttgctttggtggcgccgtccacatctgcatactccaagaaaacct 131372 Score = 48.1 bits (24), Expect = 0.035 Identities = 48/56 (85%) Strand = Plus / Minus Query: 232 acctttccaactccagaaactggctctccactcagatgagggcgcgggatgacaac 287 |||||||||||||||| |||||| |||||| ||| |||||| ||||||||||| Sbjct: 131299 acctttccaactccagcaactggtaatccactaggatcagggcgagggatgacaac 131244
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 178 bits (90), Expect = 1e-41 Identities = 164/189 (86%) Strand = Plus / Minus Query: 438 ctgtaactgcacctgctgctgtgcctgcaaaaggatattttcctgctctggtctangttg 497 |||||| ||||| || |||||||||||||| |||||| ||||||| ||||||||| | || Sbjct: 26720203 ctgtaattgcacttgttgctgtgcctgcaacaggatactttcctgttctggtctaggctg 26720144 Query: 498 ggctgagccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgataccatt 557 || | ||||||||||| | ||| || || || |||||||||||||||||||| ||||| Sbjct: 26720143 agccgctccctggtttgcccttctaacagttagggttttgtctcccatcttgatgccatt 26720084 Query: 558 tagagcagcgcaggctatgtcagtgacattgaggtcctggtacacacagaacgcatagcc 617 |||||||| ||||||||||||||||||||||| || ||||| |||||||| |||||||| Sbjct: 26720083 cagagcagcacaggctatgtcagtgacattgagatcttggtagacacagaatgcatagcc 26720024 Query: 618 ctttgagtt 626 ||||||||| Sbjct: 26720023 ctttgagtt 26720015 Score = 167 bits (84), Expect = 5e-38 Identities = 129/144 (89%) Strand = Plus / Minus Query: 298 ttaccatatttcccagcttccaacctcatgtcttccataatgtcctcatattcttcatca 357 ||||||||||| || |||||||| |||||||| ||||||||||| ||||| || || ||| Sbjct: 26720454 ttaccatatttgcctgcttccaatctcatgtcctccataatgtcttcatactcctcgtca 26720395 Query: 358 tcttttaattcatcagcagtaactacctgggtcaggcatacaacctttgtaggaagtgca 417 ||||||||||||||||| | ||| |||||||||||||| |||||||||||||| ||||| Sbjct: 26720394 tcttttaattcatcagccgaaaccacctgggtcaggcacacaacctttgtagggagtgct 26720335 Query: 418 ccaacttgatacacaagtttctgt 441 ||||||||||| |||||||||||| Sbjct: 26720334 ccaacttgatatacaagtttctgt 26720311 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 120 aaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatg 179 |||||||||||| |||||||| || ||||||||||| |||||||| || ||||||||||| Sbjct: 26720924 aaacttgttctcagggtagaacactgcaacaactggatttccaccgaacttccttccatg 26720865 Query: 180 catcgccgtctttgctttggtggagccatcaacatctgcatactctaagaacacct 235 ||| ||||||||||||||||||| ||| || |||||||||||||| ||||| |||| Sbjct: 26720864 cattgccgtctttgctttggtggcgccgtccacatctgcatactccaagaaaacct 26720809 Score = 111 bits (56), Expect = 3e-21 Identities = 83/92 (90%) Strand = Plus / Plus Query: 535 ttgtctcccatcttgataccatttagagcagcgcaggctatgtcagtgacattgaggtcc 594 ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||| || ||| Sbjct: 24294176 ttgtctcccatcttgataccattaagagcagcacaggcaatgtccgtgacattaagatcc 24294235 Query: 595 tggtacacacagaacgcatagccctttgagtt 626 ||||| |||||||| ||||||||||| ||||| Sbjct: 24294236 tggtatacacagaaagcatagcccttcgagtt 24294267 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 321 cctcatgtcttccataatgtcctcatattcttcatcatcttttaattcatcagcagtaac 380 ||||||||||| || ||||||||||| || |||||||| | | |||||| | | ||| Sbjct: 24293864 cctcatgtcttgcacgatgtcctcatactcctcatcatccctcagttcatctggtgaaac 24293923 Query: 381 tacctgggtcaggcatacaacctttgtaggaagtgc 416 || |||||||||||||| ||||||||||| ||||| Sbjct: 24293924 cacttgggtcaggcataccacctttgtaggcagtgc 24293959 Score = 48.1 bits (24), Expect = 0.035 Identities = 48/56 (85%) Strand = Plus / Minus Query: 232 acctttccaactccagaaactggctctccactcagatgagggcgcgggatgacaac 287 |||||||||||||||| |||||| |||||| ||| |||||| ||||||||||| Sbjct: 26720736 acctttccaactccagcaactggtaatccactaggatcagggcgagggatgacaac 26720681 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 274 cgcgggatgacaactttcaccaagttacc 302 |||||||| ||||||||||||| |||||| Sbjct: 24293494 cgcgggatcacaactttcaccaggttacc 24293522
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 178 bits (90), Expect = 1e-41 Identities = 164/189 (86%) Strand = Plus / Minus Query: 438 ctgtaactgcacctgctgctgtgcctgcaaaaggatattttcctgctctggtctangttg 497 |||||| ||||| || |||||||||||||| |||||| ||||||| ||||||||| | || Sbjct: 27045753 ctgtaattgcacttgttgctgtgcctgcaacaggatactttcctgttctggtctaggctg 27045694 Query: 498 ggctgagccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgataccatt 557 || | ||||||||||| | ||| || || || |||||||||||||||||||| ||||| Sbjct: 27045693 agccgctccctggtttgcccttctaacagttagggttttgtctcccatcttgatgccatt 27045634 Query: 558 tagagcagcgcaggctatgtcagtgacattgaggtcctggtacacacagaacgcatagcc 617 |||||||| ||||||||||||||||||||||| || ||||| |||||||| |||||||| Sbjct: 27045633 cagagcagcacaggctatgtcagtgacattgagatcttggtagacacagaatgcatagcc 27045574 Query: 618 ctttgagtt 626 ||||||||| Sbjct: 27045573 ctttgagtt 27045565 Score = 167 bits (84), Expect = 5e-38 Identities = 129/144 (89%) Strand = Plus / Minus Query: 298 ttaccatatttcccagcttccaacctcatgtcttccataatgtcctcatattcttcatca 357 ||||||||||| || |||||||| |||||||| ||||||||||| ||||| || || ||| Sbjct: 27046004 ttaccatatttgcctgcttccaatctcatgtcctccataatgtcttcatactcctcgtca 27045945 Query: 358 tcttttaattcatcagcagtaactacctgggtcaggcatacaacctttgtaggaagtgca 417 ||||||||||||||||| | ||| |||||||||||||| |||||||||||||| ||||| Sbjct: 27045944 tcttttaattcatcagccgaaaccacctgggtcaggcacacaacctttgtagggagtgct 27045885 Query: 418 ccaacttgatacacaagtttctgt 441 ||||||||||| |||||||||||| Sbjct: 27045884 ccaacttgatatacaagtttctgt 27045861 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 120 aaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatg 179 |||||||||||| |||||||| || ||||||||||| |||||||| || ||||||||||| Sbjct: 27046474 aaacttgttctcagggtagaacactgcaacaactggatttccaccgaacttccttccatg 27046415 Query: 180 catcgccgtctttgctttggtggagccatcaacatctgcatactctaagaacacct 235 ||| ||||||||||||||||||| ||| || |||||||||||||| ||||| |||| Sbjct: 27046414 cattgccgtctttgctttggtggcgccgtccacatctgcatactccaagaaaacct 27046359 Score = 111 bits (56), Expect = 3e-21 Identities = 83/92 (90%) Strand = Plus / Plus Query: 535 ttgtctcccatcttgataccatttagagcagcgcaggctatgtcagtgacattgaggtcc 594 ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||| || ||| Sbjct: 24605845 ttgtctcccatcttgataccattaagagcagcacaggcaatgtccgtgacattaagatcc 24605904 Query: 595 tggtacacacagaacgcatagccctttgagtt 626 ||||| |||||||| ||||||||||| ||||| Sbjct: 24605905 tggtatacacagaaagcatagcccttcgagtt 24605936 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 321 cctcatgtcttccataatgtcctcatattcttcatcatcttttaattcatcagcagtaac 380 ||||||||||| || ||||||||||| || |||||||| | | |||||| | | ||| Sbjct: 24605533 cctcatgtcttgcacgatgtcctcatactcctcatcatccctcagttcatctggtgaaac 24605592 Query: 381 tacctgggtcaggcatacaacctttgtaggaagtgc 416 || |||||||||||||| ||||||||||| ||||| Sbjct: 24605593 cacttgggtcaggcataccacctttgtaggcagtgc 24605628 Score = 48.1 bits (24), Expect = 0.035 Identities = 48/56 (85%) Strand = Plus / Minus Query: 232 acctttccaactccagaaactggctctccactcagatgagggcgcgggatgacaac 287 |||||||||||||||| |||||| |||||| ||| |||||| ||||||||||| Sbjct: 27046286 acctttccaactccagcaactggtaatccactaggatcagggcgagggatgacaac 27046231 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 274 cgcgggatgacaactttcaccaagttacc 302 |||||||| ||||||||||||| |||||| Sbjct: 24605163 cgcgggatcacaactttcaccaggttacc 24605191
>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0095P22, complete sequence Length = 162766 Score = 111 bits (56), Expect = 3e-21 Identities = 83/92 (90%) Strand = Plus / Plus Query: 535 ttgtctcccatcttgataccatttagagcagcgcaggctatgtcagtgacattgaggtcc 594 ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||| || ||| Sbjct: 95285 ttgtctcccatcttgataccattaagagcagcacaggcaatgtccgtgacattaagatcc 95344 Query: 595 tggtacacacagaacgcatagccctttgagtt 626 ||||| |||||||| ||||||||||| ||||| Sbjct: 95345 tggtatacacagaaagcatagcccttcgagtt 95376 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 321 cctcatgtcttccataatgtcctcatattcttcatcatcttttaattcatcagcagtaac 380 ||||||||||| || ||||||||||| || |||||||| | | |||||| | | ||| Sbjct: 94973 cctcatgtcttgcacgatgtcctcatactcctcatcatccctcagttcatctggtgaaac 95032 Query: 381 tacctgggtcaggcatacaacctttgtaggaagtgc 416 || |||||||||||||| ||||||||||| ||||| Sbjct: 95033 cacttgggtcaggcataccacctttgtaggcagtgc 95068 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 274 cgcgggatgacaactttcaccaagttacc 302 |||||||| ||||||||||||| |||||| Sbjct: 94603 cgcgggatcacaactttcaccaggttacc 94631
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 111 bits (56), Expect = 3e-21 Identities = 83/92 (90%) Strand = Plus / Minus Query: 535 ttgtctcccatcttgataccatttagagcagcgcaggctatgtcagtgacattgaggtcc 594 ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||| || ||| Sbjct: 114813 ttgtctcccatcttgataccattaagagcagcacaggcaatgtccgtgacattaagatcc 114754 Query: 595 tggtacacacagaacgcatagccctttgagtt 626 ||||| |||||||| ||||||||||| ||||| Sbjct: 114753 tggtatacacagaaagcatagcccttcgagtt 114722 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 321 cctcatgtcttccataatgtcctcatattcttcatcatcttttaattcatcagcagtaac 380 ||||||||||| || ||||||||||| || |||||||| | | |||||| | | ||| Sbjct: 115125 cctcatgtcttgcacgatgtcctcatactcctcatcatccctcagttcatctggtgaaac 115066 Query: 381 tacctgggtcaggcatacaacctttgtaggaagtgc 416 || |||||||||||||| ||||||||||| ||||| Sbjct: 115065 cacttgggtcaggcataccacctttgtaggcagtgc 115030 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 274 cgcgggatgacaactttcaccaagttacc 302 |||||||| ||||||||||||| |||||| Sbjct: 115495 cgcgggatcacaactttcaccaggttacc 115467
>gb|AY224501.1| Oryza sativa (japonica cultivar-group) isolate 31147 putative U2 snRNP auxiliary factor mRNA, partial cds Length = 993 Score = 111 bits (56), Expect = 3e-21 Identities = 83/92 (90%) Strand = Plus / Minus Query: 535 ttgtctcccatcttgataccatttagagcagcgcaggctatgtcagtgacattgaggtcc 594 ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||| || ||| Sbjct: 665 ttgtctcccatcttgataccattaagagcagcacaggcaatgtccgtgacattaagatcc 606 Query: 595 tggtacacacagaacgcatagccctttgagtt 626 ||||| |||||||| ||||||||||| ||||| Sbjct: 605 tggtatacacagaaagcatagcccttcgagtt 574 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 321 cctcatgtcttccataatgtcctcatattcttcatcatcttttaattcatcagcagtaac 380 ||||||||||| || ||||||||||| || |||||||| | | |||||| | | ||| Sbjct: 885 cctcatgtcttgcacgatgtcctcatactcctcatcatccctcagttcatctggtgaaac 826 Query: 381 tacctgggtcaggcatacaacctttgtaggaagtgc 416 || |||||||||||||| ||||||||||| ||||| Sbjct: 825 cacttgggtcaggcataccacctttgtaggcagtgc 790
>dbj|AK073768.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068H24, full insert sequence Length = 2016 Score = 111 bits (56), Expect = 3e-21 Identities = 83/92 (90%) Strand = Plus / Minus Query: 535 ttgtctcccatcttgataccatttagagcagcgcaggctatgtcagtgacattgaggtcc 594 ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||| || ||| Sbjct: 1363 ttgtctcccatcttgataccattaagagcagcacaggcaatgtccgtgacattaagatcc 1304 Query: 595 tggtacacacagaacgcatagccctttgagtt 626 ||||| |||||||| ||||||||||| ||||| Sbjct: 1303 tggtatacacagaaagcatagcccttcgagtt 1272 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Minus Query: 274 cgcgggatgacaactttcaccaagttaccatatttcccagcttccaacctcatgtcttcc 333 |||||||| ||||||||||||| |||||| ||| | | |||| ||||||||||| | Sbjct: 1630 cgcgggatcacaactttcaccaggttaccgtatctgcacccttcttccctcatgtcttgc 1571 Query: 334 ataatgtcctcatattcttcatcatcttttaattcatcagcagtaactacctgggtcagg 393 | ||||||||||| || |||||||| | | |||||| | | ||| || ||||||||| Sbjct: 1570 acgatgtcctcatactcctcatcatccctcagttcatctggtgaaaccacttgggtcagg 1511 Query: 394 catacaacctttgtaggaagtgc 416 ||||| ||||||||||| ||||| Sbjct: 1510 cataccacctttgtaggcagtgc 1488
>dbj|AK059255.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H08, full insert sequence Length = 2177 Score = 111 bits (56), Expect = 3e-21 Identities = 83/92 (90%) Strand = Plus / Minus Query: 535 ttgtctcccatcttgataccatttagagcagcgcaggctatgtcagtgacattgaggtcc 594 ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||| || ||| Sbjct: 1362 ttgtctcccatcttgataccattaagagcagcacaggcaatgtccgtgacattaagatcc 1303 Query: 595 tggtacacacagaacgcatagccctttgagtt 626 ||||| |||||||| ||||||||||| ||||| Sbjct: 1302 tggtatacacagaaagcatagcccttcgagtt 1271 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 321 cctcatgtcttccataatgtcctcatattcttcatcatcttttaattcatcagcagtaac 380 ||||||||||| || ||||||||||| || |||||||| | | |||||| | | ||| Sbjct: 1582 cctcatgtcttgcacgatgtcctcatactcctcatcatccctcagttcatctggtgaaac 1523 Query: 381 tacctgggtcaggcatacaacctttgtaggaagtgc 416 || |||||||||||||| ||||||||||| ||||| Sbjct: 1522 cacttgggtcaggcataccacctttgtaggcagtgc 1487 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 274 cgcgggatgacaactttcaccaagttacc 302 |||||||| ||||||||||||| |||||| Sbjct: 1811 cgcgggatcacaactttcaccaggttacc 1783
>gb|AY103558.1| Zea mays PCO134114 mRNA sequence Length = 1707 Score = 111 bits (56), Expect = 3e-21 Identities = 246/309 (79%), Gaps = 3/309 (0%) Strand = Plus / Minus Query: 321 cctcatgtcttccataatgtcctcatattcttcatcatcttttaattcatcagcagtaac 380 ||||||||| |||| |||||| | ||||| ||||| ||| | | |||||| || || || Sbjct: 985 cctcatgtcctccacaatgtcattgtattcctcatcgtctctcagttcatctgctgtcac 926 Query: 381 tacctgggtcaggcatacaacctttgtaggaagtgcacca---acttgatacacaagttt 437 |||||| |||||||| ||||| ||||| || || ||||| ||||| || || ||||| Sbjct: 925 tacctgtgtcaggcagacaacttttgtcggcagggcacctccgacttggtatacgagttt 866 Query: 438 ctgtaactgcacctgctgctgtgcctgcaaaaggatattttcctgctctggtctangttg 497 ||| | |||||||||||||||||||||| ||||| | || |||||||| ||| | || Sbjct: 865 ctgcatttgcacctgctgctgtgcctgcagcaggatgctctcttgctctggcctaggctg 806 Query: 498 ggctgagccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgataccatt 557 | | || |||||||| | || || |||||||| ||||| ||||||||||| ||||| Sbjct: 805 agaagctccttggtttgccctcctaacagtaagagtcttgtcccccatcttgatgccatt 746 Query: 558 tagagcagcgcaggctatgtcagtgacattgaggtcctggtacacacagaacgcatagcc 617 || ||||| ||||| ||||| |||||||| || |||||||| |||||||| ||||| || Sbjct: 745 aagggcagcacaggcaatgtcggtgacattaagatcctggtaaacacagaaggcatatcc 686 Query: 618 ctttgagtt 626 ||| ||||| Sbjct: 685 cttcgagtt 677 Score = 101 bits (51), Expect = 3e-18 Identities = 117/139 (84%) Strand = Plus / Minus Query: 116 cagcaaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttc 175 |||| ||||||| |||||| ||||| || || || || |||| || |||||||||| | Sbjct: 1348 cagcgaacttgtcctcgggatagaacacggccaccacctggttcccgccaaatttccgcc 1289 Query: 176 catgcatcgccgtctttgctttggtggagccatcaacatctgcatactctaagaacacct 235 |||||||| |||||||||||||||| ||||| || ||||||||||| || || ||||||| Sbjct: 1288 catgcatccccgtctttgctttggtcgagccctcgacatctgcatattccaaaaacacct 1229 Query: 236 ttccaactccagaaactgg 254 ||||||| |||| |||||| Sbjct: 1228 ttccaacaccagcaactgg 1210
>ref|NM_119833.2| Arabidopsis thaliana ATU2AF65A; RNA binding / nucleic acid binding AT4G36690 (ATU2AF65A) transcript variant AT4G36690.1 mRNA, complete cds Length = 1958 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 505 ccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgataccatttagagca 564 |||||||| || ||||| || |||||||| || ||||||||||||||||||||||| ||| Sbjct: 1425 ccctggttggcacgtctcactgtaagagtcttatctcccatcttgataccatttagggca 1366 Query: 565 gcgca 569 ||||| Sbjct: 1365 gcgca 1361
>ref|NM_202966.1| Arabidopsis thaliana ATU2AF65A; RNA binding / nucleic acid binding AT4G36690 (ATU2AF65A) transcript variant AT4G36690.3 mRNA, complete cds Length = 2131 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 505 ccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgataccatttagagca 564 |||||||| || ||||| || |||||||| || ||||||||||||||||||||||| ||| Sbjct: 1425 ccctggttggcacgtctcactgtaagagtcttatctcccatcttgataccatttagggca 1366 Query: 565 gcgca 569 ||||| Sbjct: 1365 gcgca 1361
>ref|NM_179178.1| Arabidopsis thaliana ATU2AF65A; RNA binding / nucleic acid binding AT4G36690 (ATU2AF65A) transcript variant AT4G36690.2 mRNA, complete cds Length = 2251 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 505 ccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgataccatttagagca 564 |||||||| || ||||| || |||||||| || ||||||||||||||||||||||| ||| Sbjct: 1425 ccctggttggcacgtctcactgtaagagtcttatctcccatcttgataccatttagggca 1366 Query: 565 gcgca 569 ||||| Sbjct: 1365 gcgca 1361
>gb|BT000965.1| Arabidopsis thaliana clone C105231 putative splicing factor (At4g36690) mRNA, complete cds Length = 1753 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 505 ccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgataccatttagagca 564 |||||||| || ||||| || |||||||| || ||||||||||||||||||||||| ||| Sbjct: 1313 ccctggttggcacgtctcactgtaagagtcttatctcccatcttgataccatttagggca 1254 Query: 565 gcgca 569 ||||| Sbjct: 1253 gcgca 1249
>gb|AY143980.1| Arabidopsis thaliana At4g35590/C7A10_670 mRNA, complete cds Length = 1722 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 505 ccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgataccatttagagca 564 |||||||| || ||||| || |||||||| || ||||||||||||||||||||||| ||| Sbjct: 1313 ccctggttggcacgtctcactgtaagagtcttatctcccatcttgataccatttagggca 1254 Query: 565 gcgca 569 ||||| Sbjct: 1253 gcgca 1249
>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2 Length = 198354 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 505 ccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgataccatttagagca 564 |||||||| || ||||| || |||||||| || ||||||||||||||||||||||| ||| Sbjct: 74385 ccctggttggcacgtctcactgtaagagtcttatctcccatcttgataccatttagggca 74326 Query: 565 gcgca 569 ||||| Sbjct: 74325 gcgca 74321
>gb|AY080711.1| Arabidopsis thaliana putative splicing factor (At4g36690) mRNA, complete cds Length = 2377 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 505 ccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgataccatttagagca 564 |||||||| || ||||| || |||||||| || ||||||||||||||||||||||| ||| Sbjct: 1425 ccctggttggcacgtctcactgtaagagtcttatctcccatcttgataccatttagggca 1366 Query: 565 gcgca 569 ||||| Sbjct: 1365 gcgca 1361
>emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85 Length = 198750 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 505 ccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgataccatttagagca 564 |||||||| || ||||| || |||||||| || ||||||||||||||||||||||| ||| Sbjct: 176343 ccctggttggcacgtctcactgtaagagtcttatctcccatcttgataccatttagggca 176402 Query: 565 gcgca 569 ||||| Sbjct: 176403 gcgca 176407
>gb|AF462805.1|AF462805 Arabidopsis thaliana At4g35590/C7A10_670 mRNA, complete cds Length = 1959 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 505 ccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgataccatttagagca 564 |||||||| || ||||| || |||||||| || ||||||||||||||||||||||| ||| Sbjct: 1426 ccctggttggcacgtctcactgtaagagtcttatctcccatcttgataccatttagggca 1367 Query: 565 gcgca 569 ||||| Sbjct: 1366 gcgca 1362
>emb|BX827587.1|CNS0A3Q8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS79ZE11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1740 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 505 ccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgataccatttagagca 564 |||||||| || ||||| || |||||||| || ||||||||||||||||||||||| ||| Sbjct: 1074 ccctggttggcacgtctcactgtaagagtcttatctcccatcttgataccatttagggca 1015 Query: 565 gcgca 569 ||||| Sbjct: 1014 gcgca 1010
>gb|AY112521.1| Zea mays CL1839_9 mRNA sequence Length = 647 Score = 71.9 bits (36), Expect = 2e-09 Identities = 87/104 (83%) Strand = Plus / Plus Query: 118 gcaaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttcca 177 |||||||||| ||| |||||||| ||||| || || |||| || || ||||||| ||| Sbjct: 391 gcaaacttgtcctcagggtagaacaccgccaccacctggttcccgccgaatttccgccca 450 Query: 178 tgcatcgccgtctttgctttggtggagccatcaacatctgcata 221 |||||| | |||||||||||||| ||||| || ||||||||||| Sbjct: 451 tgcatccctgtctttgctttggttgagccctccacatctgcata 494
>gb|AY104538.1| Zea mays PCO122195 mRNA sequence Length = 1262 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 574 atgtcagtgacattgaggtcctggtacacacagaacgcatagccctttgagtt 626 ||||||||||| ||||||||||||| |||||||| |||||||| |||||||| Sbjct: 1260 atgtcagtgacggtgaggtcctggtaaacacagaatgcatagccttttgagtt 1208
>emb|Y18351.1|NPL18351 Nicotiana plumbaginifolia mRNA for U2 snRNP auxiliary factor, large subunit 65a Length = 2108 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 121 aacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccat 178 ||||||||||| ||||||||||| || |||||| |||| ||||| ||||| ||||||| Sbjct: 1705 aacttgttctccgggtagaagacagctacaacttggttaccaccgaattttcttccat 1648 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 193 gctttggtggagccatcaacatctgcatactctaagaacacctttcc 239 |||||| |||| || ||||||||||||||||| || || |||||||| Sbjct: 1633 gctttgctggaaccgtcaacatctgcatactccaaaaatacctttcc 1587 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 592 tcctggtacacacagaacgcatagccctttgagtt 626 |||||||||||||| || |||||||| |||||||| Sbjct: 1234 tcctggtacacacaaaaagcatagccttttgagtt 1200
>emb|Y18350.1|NPL18350 Nicotiana plumbaginifolia mRNA for U2 snRNP auxiliary factor, large subunit 65b Length = 2204 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 121 aacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccat 178 |||||||| || || |||||||| ||||||||| |||| ||||||||||| ||||||| Sbjct: 1835 aacttgttttctggatagaagacagcaacaacttggttgccaccaaattttcttccat 1778 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 211 acatctgcatactctaagaacacctttccaac 242 |||||||||||||| || || ||||||||||| Sbjct: 1745 acatctgcatactccaaaaatacctttccaac 1714
>gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb0448F23, complete sequence Length = 132549 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 155 ggtttccaccaaatttccttccatgcatcgccgtctttgctttggtggagccatcaacat 214 |||| |||||||||||| ||||||||| |||||||||||||||| |||| || |||| Sbjct: 75654 ggttcccaccaaatttctgcccatgcatctccgtctttgctttggtcaagccctcgacat 75713 Query: 215 ctgcat 220 |||||| Sbjct: 75714 ctgcat 75719
>gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence Length = 105308 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 121 aacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccat 178 ||||||||||| || |||||||| |||| |||| |||| ||||||||||| ||||||| Sbjct: 67692 aacttgttctctggatagaagacagcaataacttggttaccaccaaattttcttccat 67635 Score = 52.0 bits (26), Expect = 0.002 Identities = 104/130 (80%) Strand = Plus / Minus Query: 494 gttgggctgagccctggtttgctcgtctgaccgtaagagttttgtctcccatcttgatac 553 |||||| || ||||||||| || || || || ||||||||||| || |||||||| || | Sbjct: 66805 gttgggttgtgccctggttagcccgcctaacagtaagagttttatcccccatcttaatcc 66746 Query: 554 catttagagcagcgcaggctatgtcagtgacattgaggtcctggtacacacagaacgcat 613 |||| ||||| || || || || ||||| ||| || |||||||||||||| || |||| Sbjct: 66745 cattaagagctgcacaagcaatatcagtaacagagacatcctggtacacacaaaaagcat 66686 Query: 614 agccctttga 623 | || ||||| Sbjct: 66685 aaccttttga 66676
>ref|NM_104765.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G60830 mRNA, complete cds Length = 336 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 202 gagccatcaacatctgcatactctaagaacacctttccaactcc 245 |||||||| ||||| |||||||||||||| ||||| |||||||| Sbjct: 230 gagccatccacatccgcatactctaagaaaaccttcccaactcc 187
>ref|NM_104771.3| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G60900 mRNA, complete cds Length = 2085 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 202 gagccatcaacatctgcatactctaagaacacctttccaactcc 245 |||||||| ||||| |||||||||||||| ||||| |||||||| Sbjct: 1763 gagccatccacatccgcatactctaagaaaaccttcccaactcc 1720
>gb|AY140014.1| Arabidopsis thaliana putative U2 snRNP auxiliary factor (At1g60900) mRNA, complete cds Length = 2072 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 202 gagccatcaacatctgcatactctaagaacacctttccaactcc 245 |||||||| ||||| |||||||||||||| ||||| |||||||| Sbjct: 1763 gagccatccacatccgcatactctaagaaaaccttcccaactcc 1720
>gb|DQ019636.1| Triticum aestivum U2AF large subunit (U2AF65a) mRNA, complete cds Length = 2240 Score = 56.0 bits (28), Expect = 1e-04 Identities = 137/173 (79%), Gaps = 3/173 (1%) Strand = Plus / Minus Query: 454 tgctgtgcctgcaaaaggatattttcctgctctggtctangttgggctgagccctggttt 513 ||||||||||||| ||||| ||||| |||||||| ||| ||| ||| || |||||| Sbjct: 1544 tgctgtgcctgcaggaggatgttttcttgctctggcctaggttctgct---ccttggttt 1488 Query: 514 gctcgtctgaccgtaagagttttgtctcccatcttgataccatttagagcagcgcaggct 573 ||||| ||||| || ||||| |||| |||| || |||||| || | |||||| ||||| Sbjct: 1487 gctcgcctgactgtgagagtcctgtcacccaactggataccgttcaaagcagcacaggca 1428 Query: 574 atgtcagtgacattgaggtcctggtacacacagaacgcatagccctttgagtt 626 ||||| |||||| | |||| ||||| |||||| ||||| ||||| ||||| Sbjct: 1427 atgtcggtgacagtcccatccttgtacaaacagaaggcatatcccttcgagtt 1375 Score = 50.1 bits (25), Expect = 0.009 Identities = 70/85 (82%) Strand = Plus / Minus Query: 323 tcatgtcttccataatgtcctcatattcttcatcatcttttaattcatcagcagtaacta 382 |||||||||||| ||||| | ||||| ||||||||| | | ||||| || | ||| | Sbjct: 1678 tcatgtcttccagtatgtcattgtattcctcatcatctctaaggtcatctgctgaaacca 1619 Query: 383 cctgggtcaggcatacaacctttgt 407 |||||||||||||||| |||||||| Sbjct: 1618 cctgggtcaggcataccacctttgt 1594 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Minus Query: 113 cttcagcaaacttgttctcggggtagaa 140 ||||||| |||||||||||||||||||| Sbjct: 2062 cttcagcgaacttgttctcggggtagaa 2035
>gb|BT013617.1| Lycopersicon esculentum clone 132418R, mRNA sequence Length = 2047 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 101 catcatagtcctcttcagcaaacttgttctcggggtagaagaccgcaacaactgggtttc 160 ||||||||||| ||||| |||||||| || || |||||||| || | |||| |||| | Sbjct: 1858 catcatagtccccttcatagaacttgttttctggatagaagacagctataacttggttgc 1799 Query: 161 caccaaatttccttccat 178 |||||||||| ||||||| Sbjct: 1798 caccaaattttcttccat 1781
>gb|AC174607.1| Lycopersicon esculentum, complete sequence Length = 115283 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 101 catcatagtcctcttcagcaaacttgttctcggggtagaagaccgcaacaactgggtttc 160 ||||||||||| ||||| |||||||| || || |||||||| || | |||| |||| | Sbjct: 93817 catcatagtccccttcatagaacttgttttctggatagaagacagctataacttggttgc 93758 Query: 161 caccaaatttccttccat 178 |||||||||| ||||||| Sbjct: 93757 caccaaattttcttccat 93740
>gb|AC162528.5| Mus musculus BAC clone RP23-4P1 from chromosome 5, complete sequence Length = 219218 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 310 ccagcttccaacctcatgtcttccataat 338 |||||||||||||||||| |||||||||| Sbjct: 24534 ccagcttccaacctcatgccttccataat 24506
>gb|AC156629.26| Medicago truncatula clone mth2-143f17, complete sequence Length = 130456 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 341 cctcatattcttcatcatctttt 363 ||||||||||||||||||||||| Sbjct: 52137 cctcatattcttcatcatctttt 52115
>ref|XM_787826.1| PREDICTED: Strongylocentrotus purpuratus similar to CG9998-PA (LOC588126), mRNA Length = 2055 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 336 aatgtcctcatattcttcatcatcttt 362 |||||| |||||||||||||||||||| Sbjct: 1263 aatgtcatcatattcttcatcatcttt 1237
>ref|XM_725986.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03112) partial mRNA Length = 3639 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 343 tcatattcttcatcatcttttaattcatca 372 |||| ||||||||||||||||| ||||||| Sbjct: 152 tcatcttcttcatcatcttttacttcatca 123
>gb|AC124956.29| Medicago truncatula clone mth2-14k24, complete sequence Length = 123871 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Minus Query: 514 gctcgtctgaccgtaagagttttgtctcccatcttgataccatttagagc 563 |||||||| || |||||||| || ||||||||||| || ||||| ||||| Sbjct: 19728 gctcgtctaacagtaagagtcttatctcccatcttaattccattcagagc 19679
>gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete sequence Length = 110895 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 cctcatattcttcatcatcttt 362 |||||||||||||||||||||| Sbjct: 84784 cctcatattcttcatcatcttt 84763
>gb|AC091851.2| Homo sapiens chromosome 5 clone CTD-2258D22, complete sequence Length = 155606 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 205 ccatcaacatctgcatactcta 226 |||||||||||||||||||||| Sbjct: 2704 ccatcaacatctgcatactcta 2725
>gb|U41263.2| Caenorhabditis elegans cosmid T19D12, complete sequence Length = 42596 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 349 tcttcatcatcttttaattcat 370 |||||||||||||||||||||| Sbjct: 18319 tcttcatcatcttttaattcat 18298
>gb|AC150372.15| Medicago truncatula clone mth2-151k24, complete sequence Length = 100538 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 341 cctcatattcttcatcatcttt 362 |||||||||||||||||||||| Sbjct: 63459 cctcatattcttcatcatcttt 63438
>ref|NM_062950.2| Caenorhabditis elegans T19D12.7 (T19D12.7) mRNA, complete cds Length = 1642 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 349 tcttcatcatcttttaattcat 370 |||||||||||||||||||||| Sbjct: 264 tcttcatcatcttttaattcat 285
>gb|AC002292.1|AC002292 Arabidopsis thaliana BAC F8A5, complete sequence Length = 120787 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 202 gagccatcaacatctgcatactctaagaacacct 235 |||||||| ||||| |||||||||||||| |||| Sbjct: 119154 gagccatccacatccgcatactctaagaaaacct 119187
>gb|AC079675.1|AC079675 Arabidopsis thaliana chromosome 1 BAC F23C21 genomic sequence, complete sequence Length = 20264 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 202 gagccatcaacatctgcatactctaagaacacct 235 |||||||| ||||| |||||||||||||| |||| Sbjct: 15586 gagccatccacatccgcatactctaagaaaacct 15553
>gb|AC018908.8|AC018908 Arabidopsis thaliana chromosome 1 BAC T7P1 genomic sequence, complete sequence Length = 102299 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 202 gagccatcaacatctgcatactctaagaacacct 235 |||||||| ||||| |||||||||||||| |||| Sbjct: 22785 gagccatccacatccgcatactctaagaaaacct 22752
>gb|AC010368.4|AC010368 Homo sapiens chromosome 5 clone CTD-2046J7, complete sequence Length = 149307 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 205 ccatcaacatctgcatactcta 226 |||||||||||||||||||||| Sbjct: 9805 ccatcaacatctgcatactcta 9784
>emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 on chromosome 3, complete sequence Length = 117153 Score = 44.1 bits (22), Expect = 0.55 Identities = 52/62 (83%) Strand = Plus / Minus Query: 117 agcaaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttcc 176 |||||| |||||||| || || ||||| |||| ||| | |||||||||||||| ||||| Sbjct: 86776 agcaaatttgttctctggataaaagacagcaattacttgatttccaccaaattttcttcc 86717 Query: 177 at 178 || Sbjct: 86716 at 86715 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 193 gctttggtggagccatcaacatctgcatactc 224 |||||||| || ||||||||||| |||||||| Sbjct: 86700 gctttggtagaaccatcaacatcagcatactc 86669
>gb|AE014826.1| Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence Length = 250663 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 351 ttcatcatcttttaattcatc 371 ||||||||||||||||||||| Sbjct: 101434 ttcatcatcttttaattcatc 101414
>gb|BC098548.1| Danio rerio zgc:110115, mRNA (cDNA clone MGC:110115 IMAGE:7285507), complete cds Length = 2083 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 327 gtcttccataatgtcctcatattcttcatcatc 359 |||||||| ||| |||||||| ||||||||||| Sbjct: 1578 gtcttccacaatctcctcatactcttcatcatc 1546
>gb|AC158769.2| Mus musculus chromosome 15, clone RP23-128J3, complete sequence Length = 199472 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 64 tattggcattggaaaagagagataa 88 |||||||||||||||||||| |||| Sbjct: 51940 tattggcattggaaaagagacataa 51916
>emb|BX957221.1| Methanococcus maripaludis S2 complete genome; segment 3/5 Length = 348230 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 tcttcatcatcttttaattca 369 ||||||||||||||||||||| Sbjct: 293142 tcttcatcatcttttaattca 293162
>ref|NM_001029956.1| Danio rerio zgc:110115 (zgc:110115), mRNA Length = 2083 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 327 gtcttccataatgtcctcatattcttcatcatc 359 |||||||| ||| |||||||| ||||||||||| Sbjct: 1578 gtcttccacaatctcctcatactcttcatcatc 1546
>gb|AE011846.1| Xanthomonas axonopodis pv. citri str. 306, section 224 of 469 of the complete genome Length = 11508 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 ctgcacctgctgctgtgcctg 464 ||||||||||||||||||||| Sbjct: 9287 ctgcacctgctgctgtgcctg 9307
>emb|BX005073.7| Zebrafish DNA sequence from clone CH211-129N18, complete sequence Length = 185849 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 tcatattcttcatcatctttt 363 ||||||||||||||||||||| Sbjct: 170633 tcatattcttcatcatctttt 170653
>gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 of 73 of the complete sequence Length = 585533 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 ctgcacctgctgctgtgcctg 464 ||||||||||||||||||||| Sbjct: 46841 ctgcacctgctgctgtgcctg 46861
>gb|AC123606.11| Mus musculus chromosome 15, clone RP24-528D12, complete sequence Length = 175623 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 64 tattggcattggaaaagagagataa 88 |||||||||||||||||||| |||| Sbjct: 82896 tattggcattggaaaagagacataa 82872
>dbj|AK116043.1| Ciona intestinalis cDNA, clone:citb008l16, full insert sequence Length = 1935 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 328 tcttccataatgtcctcatattcttcatcatct 360 |||||||| || ||||||||||| ||||||||| Sbjct: 1340 tcttccatgatctcctcatattcctcatcatct 1308
>emb|CR848818.10| Zebrafish DNA sequence from clone DKEY-38O19 in linkage group 16, complete sequence Length = 208738 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 327 gtcttccataatgtcctcatattcttcatcatc 359 |||||||| ||| |||||||| ||||||||||| Sbjct: 156827 gtcttccacaatctcctcatactcttcatcatc 156795
>gb|BC077314.1| Xenopus laevis ornithine aminotransferase (gyrate atrophy), mRNA (cDNA clone MGC:80244 IMAGE:5048763), complete cds Length = 1903 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 ccttccatgcatcgccgtctttgctttg 198 |||||||||| |||| |||||||||||| Sbjct: 1246 ccttccatgcgtcgcagtctttgctttg 1219
>ref|XM_705646.1| Candida albicans SC5314 tyrosine-sensitive DAHP synthase (CaO19.11542), mRNA Length = 1113 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 tcatcttttaattcatcagc 374 |||||||||||||||||||| Sbjct: 272 tcatcttttaattcatcagc 253
>ref|XM_705637.1| Candida albicans SC5314 tyrosine-sensitive DAHP synthase (CaO19.4060), mRNA Length = 1113 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 tcatcttttaattcatcagc 374 |||||||||||||||||||| Sbjct: 272 tcatcttttaattcatcagc 253
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 cgccgtctttgctttggtgg 202 |||||||||||||||||||| Sbjct: 1518633 cgccgtctttgctttggtgg 1518652
>gb|AC154422.2| Mus musculus BAC clone RP24-218O2 from chromosome 13, complete sequence Length = 170866 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cctcatgtcttccataatgt 340 |||||||||||||||||||| Sbjct: 144672 cctcatgtcttccataatgt 144691
>emb|CR974476.4| Mouse DNA sequence from clone RP24-469J5 on chromosome 2, complete sequence Length = 138122 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 109448 actattggcattggaaaaga 109429
>gb|BC045249.1| Xenopus laevis ornithine aminotransferase, mRNA (cDNA clone MGC:53882 IMAGE:5543139), complete cds Length = 1910 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 ccttccatgcatcgccgtctttgctttg 198 ||||||||||||| | |||||||||||| Sbjct: 1235 ccttccatgcatcacagtctttgctttg 1208
>ref|XM_720188.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04905) partial mRNA Length = 1371 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 tcctcatattcttcatcatc 359 |||||||||||||||||||| Sbjct: 773 tcctcatattcttcatcatc 754
>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome Length = 1144377 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 ggagccatcaacatctgcat 220 |||||||||||||||||||| Sbjct: 570375 ggagccatcaacatctgcat 570356
>gb|AC165255.2| Mus musculus BAC clone RP23-239B8 from chromosome 13, complete sequence Length = 205903 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 cctcatgtcttccataatgt 340 |||||||||||||||||||| Sbjct: 151828 cctcatgtcttccataatgt 151809
>emb|BX957223.1| Methanococcus maripaludis S2 complete genome; segment 5/5 Length = 268122 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 ttttaattcatcagcagtaactac 383 ||||||||||||| |||||||||| Sbjct: 157246 ttttaattcatcaacagtaactac 157223
>emb|BX571860.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 2/17 Length = 349287 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 acacaaaacactattggcat 72 |||||||||||||||||||| Sbjct: 127467 acacaaaacactattggcat 127486
>emb|CR788287.7| Mouse DNA sequence from clone RP23-362B9 on chromosome 2, complete sequence Length = 98311 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 29442 actattggcattggaaaaga 29461
>emb|BX324204.32| Mouse DNA sequence from clone RP23-86F8 on chromosome 2, complete sequence Length = 90051 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 86001 actattggcattggaaaaga 85982
>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome Length = 2225959 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 cctcttcagcaaacttgttc 129 |||||||||||||||||||| Sbjct: 918472 cctcttcagcaaacttgttc 918491
>gb|AC117464.4| Homo sapiens 3 BAC RP11-412N9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154728 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 ggctatgtcagtgacattga 589 |||||||||||||||||||| Sbjct: 108273 ggctatgtcagtgacattga 108254
>dbj|AK140724.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length enriched library, clone:C030019B04 product:unclassifiable, full insert sequence Length = 2461 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 2303 actattggcattggaaaaga 2284
>gb|AC091169.7| Homo sapiens chromosome 18, clone RP11-809A17, complete sequence Length = 163138 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tcctcttcagcaaacttgtt 128 |||||||||||||||||||| Sbjct: 136797 tcctcttcagcaaacttgtt 136778
>emb|CR318639.6| Mouse DNA sequence from clone RP23-317N11 on chromosome 2, complete sequence Length = 193326 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 168702 actattggcattggaaaaga 168721 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 68695 actattggcattggaaaaga 68714
>emb|CR354442.5| Mouse DNA sequence from clone RP24-562O19 on chromosome 2, complete sequence Length = 145110 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 139720 actattggcattggaaaaga 139701 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 7207 actattggcattggaaaaga 7226
>gb|AF232004.3| Pseudomonas syringae pv. tomato strain DC3000 Hrp pathogenicity island, complete sequence Length = 52498 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cgccgtctttgctttggtgg 202 |||||||||||||||||||| Sbjct: 35331 cgccgtctttgctttggtgg 35312
>ref|NM_001028646.1| Caenorhabditis elegans Serpentine Receptor, class W family member (srw-68) (srw-68) mRNA, complete cds Length = 1017 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 actgggtttccaccaaattt 170 |||||||||||||||||||| Sbjct: 580 actgggtttccaccaaattt 599
>ref|NM_001028647.1| Caenorhabditis elegans Serpentine Receptor, class W family member (srw-68) (srw-68) mRNA, complete cds Length = 1140 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 actgggtttccaccaaattt 170 |||||||||||||||||||| Sbjct: 580 actgggtttccaccaaattt 599
>gb|BC040773.1| Mus musculus similar to LRRGT00085, mRNA (cDNA clone IMAGE:4505796) Length = 4158 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 2242 actattggcattggaaaaga 2223
>gb|U53139.2| Caenorhabditis elegans cosmid F18E3, complete sequence Length = 23138 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 actgggtttccaccaaattt 170 |||||||||||||||||||| Sbjct: 13856 actgggtttccaccaaattt 13837
>emb|BX890623.6| Mouse DNA sequence from clone RP23-83O23 on chromosome 2, complete sequence Length = 226542 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 31401 actattggcattggaaaaga 31420
>emb|BX842025.1|CNS09Y86 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS64ZA09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1831 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 attcttcatcatcttttaattcat 370 ||||||||||||||||||| |||| Sbjct: 1559 attcttcatcatcttttaactcat 1582
>emb|BX813319.4| Mouse DNA sequence from clone RP23-54B12 on chromosome 2, complete sequence Length = 217197 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 101215 actattggcattggaaaaga 101196
>gb|AY005479.1| Xenopus laevis ornithine aminotransferase (OAT) mRNA, complete cds Length = 1320 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 ccttccatgcatcgccgtctttgctttg 198 ||||||||||||| | |||||||||||| Sbjct: 1177 ccttccatgcatcacagtctttgctttg 1150
>gb|AC079121.5| Homo sapiens BAC clone RP11-368O9 from 2, complete sequence Length = 79228 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 agagttttgtctcccatctt 548 |||||||||||||||||||| Sbjct: 36063 agagttttgtctcccatctt 36044
>gb|AC133528.4| Homo sapiens BAC clone RP11-367H1 from 2, complete sequence Length = 151700 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 caccaacttgatacacaagt 435 |||||||||||||||||||| Sbjct: 131580 caccaacttgatacacaagt 131599
>emb|BX682537.3| Mouse DNA sequence from clone RP23-376N23 on chromosome 2, complete sequence Length = 186050 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 121988 actattggcattggaaaaga 122007 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 24404 actattggcattggaaaaga 24423
>emb|AL935299.11| Zebrafish DNA sequence from clone DKEY-38M5, complete sequence Length = 229574 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 aacatctgcatactctaagaacac 233 ||||||| |||||||||||||||| Sbjct: 106104 aacatctacatactctaagaacac 106081
>emb|BX511235.10| Mouse DNA sequence from clone RP23-232H13 on chromosome 2, complete sequence Length = 169581 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 161139 actattggcattggaaaaga 161120 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 71730 actattggcattggaaaaga 71711
>emb|BX284639.15| Mouse DNA sequence from clone RP24-87L14 on chromosome 2, complete sequence Length = 115602 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 6045 actattggcattggaaaaga 6064
>emb|AL845476.15| Mouse DNA sequence from clone RP23-355G16 on chromosome 2, complete sequence Length = 218484 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 123098 actattggcattggaaaaga 123079
>emb|BX005149.16| Mouse DNA sequence from clone RP24-574J13 on chromosome 2, complete sequence Length = 179228 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 129176 actattggcattggaaaaga 129157
>emb|CT010482.9| Mouse DNA sequence from clone RP23-282O12 on chromosome 2, complete sequence Length = 188883 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 93766 actattggcattggaaaaga 93747
>emb|CR955031.3| Mouse DNA sequence from clone RP24-395K22 on chromosome 2, complete sequence Length = 178000 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 46000 actattggcattggaaaaga 46019
>gb|U16118.1|PSU16118 Pseudomonas syringae pv. tomato avrE avirulence locus, transcriptional units II and III, promoter region, and orf, partial cds Length = 2008 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cgccgtctttgctttggtgg 202 |||||||||||||||||||| Sbjct: 1275 cgccgtctttgctttggtgg 1256
>emb|AL845456.11| Mouse DNA sequence from clone RP23-90C6 on chromosome 2, complete sequence Length = 158544 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 152457 actattggcattggaaaaga 152438
>gb|U97505.1|PSU97505 Pseudomonas syringae avirulence protein (avrE) and avirulence protein (avrF) genes, complete cds Length = 6130 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cgccgtctttgctttggtgg 202 |||||||||||||||||||| Sbjct: 1153 cgccgtctttgctttggtgg 1134
>emb|CR848808.14| Mouse DNA sequence from clone RP23-442I10 on chromosome 2, complete sequence Length = 128936 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 36581 actattggcattggaaaaga 36600
>emb|CR394545.9| Zebrafish DNA sequence from clone CH211-103E6 in linkage group 15, complete sequence Length = 177018 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 tcttttaattcatcagcagt 377 |||||||||||||||||||| Sbjct: 83743 tcttttaattcatcagcagt 83724
>gb|U53216.1|CAU53216 Candida albicans 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (ARO4) gene, complete cds Length = 2184 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 tcatcttttaattcatcagc 374 |||||||||||||||||||| Sbjct: 732 tcatcttttaattcatcagc 713
>emb|AL845494.3| Mouse DNA sequence from clone RP23-330D3 on chromosome 2, complete sequence Length = 216517 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 111884 actattggcattggaaaaga 111903
>emb|AL845491.3| Mouse DNA sequence from clone RP23-360A2 on chromosome 2, complete sequence Length = 201381 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 actattggcattggaaaaga 81 |||||||||||||||||||| Sbjct: 142332 actattggcattggaaaaga 142351 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,659,453 Number of Sequences: 3902068 Number of extensions: 5659453 Number of successful extensions: 117386 Number of sequences better than 10.0: 108 Number of HSP's better than 10.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116985 Number of HSP's gapped (non-prelim): 392 length of query: 626 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 603 effective length of database: 17,143,297,704 effective search space: 10337408515512 effective search space used: 10337408515512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
