ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16g09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 129 bits (65), Expect = 1e-26 Identities = 166/197 (84%), Gaps = 2/197 (1%) Strand = Plus / Plus Query: 269 accttcaggtagtataccaccccggagatgacctgcttctgcgccgccgccactgcg-gt 327 ||||| |||||||| |||| ||||||| |||||||||||||||| || | || ||| | Sbjct: 16707989 accttgaggtagtaggccacgccggagacgacctgcttctgcgcctccacgac-gcgtgc 16708047 Query: 328 gaacgcgagctggacctggacggggtcgccgttgttgcctgatccgccgtggccgaggcg 387 ||||||||||| ||| ||||||||||| || | ||| || |||||||||| |||||| Sbjct: 16708048 gaacgcgagcttcaccgggacggggtcggcggggccgccggagccgccgtggcggaggcg 16708107 Query: 388 gcggttgtgctcggccaccgcgaaccggcccagggactgcaccaacttgttcttgcccac 447 ||||||||||||||| || ||||| |||||||| ||||||||| |||||| ||||||| Sbjct: 16708108 gcggttgtgctcggcgacggcgaagcggcccagcgactgcaccgccttgttgctgcccac 16708167 Query: 448 gtcactgatctccgtcc 464 ||| ||||||||||||| Sbjct: 16708168 gtccctgatctccgtcc 16708184 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 171 tgaaggacacgagctccttggacttggcccacgccttgacgaccaccacggcgtcgaac 229 ||||||| |||||||||||||| ||| ||| ||||| || |||||||||||||||||| Sbjct: 16707876 tgaaggagacgagctccttggatttgagccaggccttcaccaccaccacggcgtcgaac 16707934 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 ggcgatggagagcgtggcgag 543 ||||||||||||||||||||| Sbjct: 7923117 ggcgatggagagcgtggcgag 7923137 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 477 cgcctgcggctgccgccggag 497 ||||||||||||||||||||| Sbjct: 5320209 cgcctgcggctgccgccggag 5320189
>dbj|AK102139.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033085J19, full insert sequence Length = 658 Score = 129 bits (65), Expect = 1e-26 Identities = 166/197 (84%), Gaps = 2/197 (1%) Strand = Plus / Minus Query: 269 accttcaggtagtataccaccccggagatgacctgcttctgcgccgccgccactgcg-gt 327 ||||| |||||||| |||| ||||||| |||||||||||||||| || | || ||| | Sbjct: 348 accttgaggtagtaggccacgccggagacgacctgcttctgcgcctccacgac-gcgtgc 290 Query: 328 gaacgcgagctggacctggacggggtcgccgttgttgcctgatccgccgtggccgaggcg 387 ||||||||||| ||| ||||||||||| || | ||| || |||||||||| |||||| Sbjct: 289 gaacgcgagcttcaccgggacggggtcggcggggccgccggagccgccgtggcggaggcg 230 Query: 388 gcggttgtgctcggccaccgcgaaccggcccagggactgcaccaacttgttcttgcccac 447 ||||||||||||||| || ||||| |||||||| ||||||||| |||||| ||||||| Sbjct: 229 gcggttgtgctcggcgacggcgaagcggcccagcgactgcaccgccttgttgctgcccac 170 Query: 448 gtcactgatctccgtcc 464 ||| ||||||||||||| Sbjct: 169 gtccctgatctccgtcc 153 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 171 tgaaggacacgagctccttggacttggcccacgccttgacgaccaccacggcgtcgaac 229 ||||||| |||||||||||||| ||| ||| ||||| || |||||||||||||||||| Sbjct: 461 tgaaggagacgagctccttggatttgagccaggccttcaccaccaccacggcgtcgaac 403
>dbj|AK063869.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-E07, full insert sequence Length = 655 Score = 129 bits (65), Expect = 1e-26 Identities = 166/197 (84%), Gaps = 2/197 (1%) Strand = Plus / Minus Query: 269 accttcaggtagtataccaccccggagatgacctgcttctgcgccgccgccactgcg-gt 327 ||||| |||||||| |||| ||||||| |||||||||||||||| || | || ||| | Sbjct: 345 accttgaggtagtaggccacgccggagacgacctgcttctgcgcctccacgac-gcgtgc 287 Query: 328 gaacgcgagctggacctggacggggtcgccgttgttgcctgatccgccgtggccgaggcg 387 ||||||||||| ||| ||||||||||| || | ||| || |||||||||| |||||| Sbjct: 286 gaacgcgagcttcaccgggacggggtcggcggggccgccggagccgccgtggcggaggcg 227 Query: 388 gcggttgtgctcggccaccgcgaaccggcccagggactgcaccaacttgttcttgcccac 447 ||||||||||||||| || ||||| |||||||| ||||||||| |||||| ||||||| Sbjct: 226 gcggttgtgctcggcgacggcgaagcggcccagcgactgcaccgccttgttgctgcccac 167 Query: 448 gtcactgatctccgtcc 464 ||| ||||||||||||| Sbjct: 166 gtccctgatctccgtcc 150 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 171 tgaaggacacgagctccttggacttggcccacgccttgacgaccaccacggcgtcgaac 229 ||||||| |||||||||||||| ||| ||| ||||| || |||||||||||||||||| Sbjct: 458 tgaaggagacgagctccttggatttgagccaggccttcaccaccaccacggcgtcgaac 400
>gb|AF411921.1| Chlamydomonas reinhardtii ATP synthase F1F0 subunit 6 (ATP6) gene, complete cds; nuclear gene for mitochondrial product Length = 3497 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 239 ccgccgccgcccgccggggccc 260 |||||||||||||||||||||| Sbjct: 2882 ccgccgccgcccgccggggccc 2861
>gb|AF411119.1| Chlamydomonas reinhardtii ATP synthase F1F0 subunit 6 (ATP6) mRNA, complete cds; nuclear gene for mitochondrial product Length = 2349 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 239 ccgccgccgcccgccggggccc 260 |||||||||||||||||||||| Sbjct: 1732 ccgccgccgcccgccggggccc 1711
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 371 ccgccgtggccgaggcggcggt 392 |||||||||||||||||||||| Sbjct: 1181962 ccgccgtggccgaggcggcggt 1181941
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 371 ccgccgtggccgaggcggcggt 392 |||||||||||||||||||||| Sbjct: 856868 ccgccgtggccgaggcggcggt 856847
>ref|NM_191144.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1839 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 236 tccccgccgccgcccgccggggcccgggc 264 |||||||||||||||||| | |||||||| Sbjct: 9 tccccgccgccgcccgcccgcgcccgggc 37
>ref|NM_138457.2| Homo sapiens forkhead box P4 (FOXP4), transcript variant 2, mRNA Length = 5926 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 cccgccgccgcccgccggggc 258 ||||||||||||||||||||| Sbjct: 361 cccgccgccgcccgccggggc 341
>ref|NM_001012427.1| Homo sapiens forkhead box P4 (FOXP4), transcript variant 3, mRNA Length = 5959 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 cccgccgccgcccgccggggc 258 ||||||||||||||||||||| Sbjct: 361 cccgccgccgcccgccggggc 341
>ref|XM_514268.1| PREDICTED: Pan troglodytes similar to tetratricopeptide repeat domain 13 (LOC457814), mRNA Length = 1554 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 ccgccgccgcccgccggggcc 259 ||||||||||||||||||||| Sbjct: 263 ccgccgccgcccgccggggcc 243
>ref|NM_001012426.1| Homo sapiens forkhead box P4 (FOXP4), transcript variant 1, mRNA Length = 5965 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 cccgccgccgcccgccggggc 258 ||||||||||||||||||||| Sbjct: 361 cccgccgccgcccgccggggc 341
>emb|CR352251.11| Zebrafish DNA sequence from clone CH211-138M21 in linkage group 10, complete sequence Length = 175847 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 447 cgtcactgatctccgtccggccgcc 471 ||||||||||||||||||| ||||| Sbjct: 37136 cgtcactgatctccgtccgtccgcc 37112
>emb|AL844165.5| Human DNA sequence from clone RP11-541E22 on chromosome 1 Contains the 5' end of the TTC13 gene for tetratricopeptide repeat domain 13, the 5' end of the gene for the likely ortholog of yeast ARV1 (ARV1) and a CpG island, complete sequence Length = 42925 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 ccgccgccgcccgccggggcc 259 ||||||||||||||||||||| Sbjct: 26058 ccgccgccgcccgccggggcc 26078
>gb|BC110880.1| Homo sapiens tetratricopeptide repeat domain 13, mRNA (cDNA clone IMAGE:6068886), with apparent retained intron Length = 3026 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 ccgccgccgcccgccggggcc 259 ||||||||||||||||||||| Sbjct: 224 ccgccgccgcccgccggggcc 204
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 466 gccgcccacagcgcctgcggctgccgccg 494 ||||||||| |||||||||||||| |||| Sbjct: 3518101 gccgcccacggcgcctgcggctgcggccg 3518073
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 ataccaccccggagatgacct 302 ||||||||||||||||||||| Sbjct: 844989 ataccaccccggagatgacct 844969
>emb|AL139331.19| Human DNA sequence from clone RP11-328M4 on chromosome 6 Contains a novel gene, the FOXP4 gene for forkhead box P4 and five CpG islands, complete sequence Length = 180547 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 cccgccgccgcccgccggggc 258 ||||||||||||||||||||| Sbjct: 118326 cccgccgccgcccgccggggc 118306
>emb|AL121832.56|HSJ908M14 Human DNA sequence from clone RP5-908M14 on chromosome 20 Contains the RPS21 gene for ribosomal protein S21, the C20orf150 gene for a novel protein similar to Mus musculus cables,, the C20orf151 gene for a novel protein weakly similar to retinoblastoma binding protein 8 (RBBP8), a novel gene and four CpG islands, complete sequence Length = 79951 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 237 ccccgccgccgcccgccggggcccg 261 |||||||||||||||||| |||||| Sbjct: 30534 ccccgccgccgcccgccgaggcccg 30510
>gb|BC047662.1| Homo sapiens tetratricopeptide repeat domain 13, mRNA (cDNA clone IMAGE:5263593), containing frame-shift errors Length = 3122 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 ccgccgccgcccgccggggcc 259 ||||||||||||||||||||| Sbjct: 249 ccgccgccgcccgccggggcc 229
>emb|AL662948.4|OSJN00150 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060B20, complete sequence Length = 147254 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 ggcgatggagagcgtggcgag 543 ||||||||||||||||||||| Sbjct: 128814 ggcgatggagagcgtggcgag 128834
>emb|AL662936.4|OSJN00137 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0052P16, complete sequence Length = 155702 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 477 cgcctgcggctgccgccggag 497 ||||||||||||||||||||| Sbjct: 20923 cgcctgcggctgccgccggag 20903
>dbj|AK075561.1| Homo sapiens cDNA PSEC0261 fis, clone NT2RP3004063, weakly similar to MITOCHONDRIAL PRECURSOR PROTEINS IMPORT RECEPTOR Length = 3080 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 ccgccgccgcccgccggggcc 259 ||||||||||||||||||||| Sbjct: 239 ccgccgccgcccgccggggcc 219
>dbj|AK075386.1| Homo sapiens cDNA PSEC0076 fis, clone NT2RP2003471, weakly similar to MITOCHONDRIAL PRECURSOR PROTEINS IMPORT RECEPTOR3 Length = 3253 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 ccgccgccgcccgccggggcc 259 ||||||||||||||||||||| Sbjct: 226 ccgccgccgcccgccggggcc 206
>gb|DQ429030.1| Sorghum propinquum locus pSB0301 genomic sequence Length = 861 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 629 ggcggcggttgtgctcggcca 609
>gb|DQ429029.1| Sorghum bicolor voucher PI585454 locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 627 ggcggcggttgtgctcggcca 607
>gb|DQ429028.1| Sorghum bicolor voucher PI267539 locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 633 ggcggcggttgtgctcggcca 613
>gb|DQ429027.1| Sorghum bicolor voucher PI267408 locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 633 ggcggcggttgtgctcggcca 613
>gb|DQ429026.1| Sorghum bicolor voucher PI221607 locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 633 ggcggcggttgtgctcggcca 613
>gb|DQ429025.1| Sorghum bicolor voucher PI152702 locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 633 ggcggcggttgtgctcggcca 613
>gb|DQ429024.1| Sorghum bicolor voucher NSL92371 locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 633 ggcggcggttgtgctcggcca 613
>gb|DQ429023.1| Sorghum bicolor voucher NSL87902b locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 633 ggcggcggttgtgctcggcca 613
>gb|DQ429022.1| Sorghum bicolor voucher NSL87902a locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 633 ggcggcggttgtgctcggcca 613
>gb|DQ429021.1| Sorghum bicolor voucher NSL87666 locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 633 ggcggcggttgtgctcggcca 613
>gb|DQ429020.1| Sorghum bicolor voucher NSL77217 locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 633 ggcggcggttgtgctcggcca 613
>gb|DQ429019.1| Sorghum bicolor voucher NSL77034 locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 633 ggcggcggttgtgctcggcca 613
>gb|DQ429018.1| Sorghum bicolor voucher NSL56174 locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 633 ggcggcggttgtgctcggcca 613
>gb|DQ429017.1| Sorghum bicolor voucher NSL56003 locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 633 ggcggcggttgtgctcggcca 613
>gb|DQ429016.1| Sorghum bicolor voucher NSL55243 locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 633 ggcggcggttgtgctcggcca 613
>gb|DQ429015.1| Sorghum bicolor voucher NSL51365 locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 633 ggcggcggttgtgctcggcca 613
>gb|DQ429014.1| Sorghum bicolor voucher NSL51030 locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 627 ggcggcggttgtgctcggcca 607
>gb|DQ429013.1| Sorghum bicolor voucher NSL50875 locus pSB0301 genomic sequence Length = 878 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 627 ggcggcggttgtgctcggcca 607
>ref|NM_024525.2| Homo sapiens tetratricopeptide repeat domain 13 (TTC13), mRNA Length = 3253 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 ccgccgccgcccgccggggcc 259 ||||||||||||||||||||| Sbjct: 226 ccgccgccgcccgccggggcc 206
>gb|AF255609.1|AF255609 Homo sapiens high mobility group protein HMG1 gene, exons 1 and 2, partial cds Length = 4157 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 ccgccgccgcccgccggggcc 259 ||||||||||||||||||||| Sbjct: 2915 ccgccgccgcccgccggggcc 2895
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 229 cggcctatccccgccgccgcccgcc 253 ||||||||||||||||||| ||||| Sbjct: 15154572 cggcctatccccgccgccggccgcc 15154596 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ccccgccgccgcccgccggg 256 |||||||||||||||||||| Sbjct: 5318217 ccccgccgccgcccgccggg 5318236
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 236 tccccgccgccgcccgccggggcccgggc 264 |||||||||||||||||| | |||||||| Sbjct: 30947988 tccccgccgccgcccgcccgcgcccgggc 30947960 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 198 cccacgccttgacgaccaccacggcgtcgaac 229 |||| ||||||||||| || |||||||||||| Sbjct: 39872608 cccaggccttgacgacgacgacggcgtcgaac 39872577
>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E07 Length = 176486 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 236 tccccgccgccgcccgccggggcccgggc 264 |||||||||||||||||| | |||||||| Sbjct: 4967 tccccgccgccgcccgcccgcgcccgggc 4939
>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0638D12 Length = 161277 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 236 tccccgccgccgcccgccggggcccgggc 264 |||||||||||||||||| | |||||||| Sbjct: 148355 tccccgccgccgcccgcccgcgcccgggc 148327
>ref|XM_574239.1| PREDICTED: Rattus norvegicus similar to MARVEL (membrane-associating) domain containing 3 isoform a (LOC498950), mRNA Length = 1389 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 540 cgaggaggaggagacaggaga 560 ||||||||||||||||||||| Sbjct: 1051 cgaggaggaggagacaggaga 1031
>ref|NM_031215.1| Homo sapiens Cdk5 and Abl enzyme substrate 2 (CABLES2), mRNA Length = 3860 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 ccccgccgccgcccgccggggcccg 261 |||||||||||||||||| |||||| Sbjct: 213 ccccgccgccgcccgccgaggcccg 237
>gb|AF033220.1|AF033220 Anopheles punctulatus internal transcribed spacer 2, complete sequence Length = 567 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 ccgccgccgcccgccggggcc 259 ||||||||||||||||||||| Sbjct: 106 ccgccgccgcccgccggggcc 86
>dbj|AP005763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0015G09 Length = 140893 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 229 cggcctatccccgccgccgcccgcc 253 ||||||||||||||||||| ||||| Sbjct: 29086 cggcctatccccgccgccggccgcc 29110
>dbj|AP005910.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0034G14 Length = 154120 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 229 cggcctatccccgccgccgcccgcc 253 ||||||||||||||||||| ||||| Sbjct: 133892 cggcctatccccgccgccggccgcc 133916
>gb|BC052803.1| Homo sapiens forkhead box P4, transcript variant 3, mRNA (cDNA clone MGC:59875 IMAGE:6420057), complete cds Length = 3311 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 cccgccgccgcccgccggggc 258 ||||||||||||||||||||| Sbjct: 139 cccgccgccgcccgccggggc 119
>emb|AJ011617.1|ZMA011617 Zea mays mRNA for SBP-domain protein 4 Length = 1975 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 894 ggcggcggttgtgctcggcca 874
>emb|AJ011616.1|ZMA011616 Zea mays mRNA for SBP-domain protein 3 Length = 2059 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 ggcggcggttgtgctcggcca 404 ||||||||||||||||||||| Sbjct: 968 ggcggcggttgtgctcggcca 948
>dbj|AK106716.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-F12, full insert sequence Length = 1369 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 523 ggcgatggagagcgtggcgag 543 ||||||||||||||||||||| Sbjct: 194 ggcgatggagagcgtggcgag 174
>emb|CR847788.7| Zebrafish DNA sequence from clone CH211-249H16 in linkage group 10, complete sequence Length = 176964 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 447 cgtcactgatctccgtccggccgcc 471 ||||||||||||||||||| ||||| Sbjct: 31719 cgtcactgatctccgtccgtccgcc 31695
>emb|AL161665.5|CNS01RH9 Human chromosome 14 DNA sequence BAC R-431H16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 172993 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 269 accttcaggtagtataccacc 289 ||||||||||||||||||||| Sbjct: 127634 accttcaggtagtataccacc 127654
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 203 gccttgacgaccaccacggcgtcga 227 |||||| |||||||||||||||||| Sbjct: 567641 gccttgccgaccaccacggcgtcga 567665
>gb|BC040962.1| Homo sapiens forkhead box P4, mRNA (cDNA clone MGC:48953 IMAGE:5527139), complete cds Length = 4186 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 cccgccgccgcccgccggggc 258 ||||||||||||||||||||| Sbjct: 361 cccgccgccgcccgccggggc 341
>emb|AL833797.6| Mouse DNA sequence from clone RP23-89B11 on chromosome 2, complete sequence Length = 165400 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 541 gaggaggaggagacaggagac 561 ||||||||||||||||||||| Sbjct: 136710 gaggaggaggagacaggagac 136690
>gb|AY743654.1| Malassezia sympodialis strain MA 424 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 646 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 tctccgtccggccgcccaca 475 |||||||||||||||||||| Sbjct: 556 tctccgtccggccgcccaca 537
>gb|AY743653.1| Malassezia sympodialis strain MA 419 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 646 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 tctccgtccggccgcccaca 475 |||||||||||||||||||| Sbjct: 556 tctccgtccggccgcccaca 537
>gb|AY743652.1| Malassezia sympodialis strain MA 314 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 646 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 tctccgtccggccgcccaca 475 |||||||||||||||||||| Sbjct: 556 tctccgtccggccgcccaca 537
>gb|AY743651.1| Malassezia sympodialis strain MA 262 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 646 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 tctccgtccggccgcccaca 475 |||||||||||||||||||| Sbjct: 556 tctccgtccggccgcccaca 537
>gb|AY743650.1| Malassezia sympodialis strain MA 261 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 646 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 tctccgtccggccgcccaca 475 |||||||||||||||||||| Sbjct: 556 tctccgtccggccgcccaca 537
>gb|AY743649.1| Malassezia sympodialis strain MA 237 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 646 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 tctccgtccggccgcccaca 475 |||||||||||||||||||| Sbjct: 556 tctccgtccggccgcccaca 537
>gb|AY743648.1| Malassezia sympodialis strain MA 231 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 646 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 tctccgtccggccgcccaca 475 |||||||||||||||||||| Sbjct: 556 tctccgtccggccgcccaca 537
>ref|XM_465863.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1578 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 ctgcggctgccgccggagcc 499 |||||||||||||||||||| Sbjct: 91 ctgcggctgccgccggagcc 110
>ref|NM_195629.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0053D03.28), mRNA Length = 2736 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 agcgtggcgaggaggaggag 552 |||||||||||||||||||| Sbjct: 1257 agcgtggcgaggaggaggag 1276
>ref|XM_470266.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1344 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cccgccgccgcccgccgggg 257 |||||||||||||||||||| Sbjct: 27 cccgccgccgcccgccgggg 46
>ref|XM_478783.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2097 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 518 gcagcggcgatggagagcgtggcgaggaggag 549 |||||||||| || ||||| |||||||||||| Sbjct: 47 gcagcggcgacggcgagcgcggcgaggaggag 16
>gb|BT016570.1| Zea mays clone Contig403 mRNA sequence Length = 1313 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 ccggccgcccacagcgcctg 482 |||||||||||||||||||| Sbjct: 499 ccggccgcccacagcgcctg 480
>gb|AC165091.3| Mus musculus BAC clone RP23-25M19 from chromosome 17, complete sequence Length = 198085 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 tggcgaggaggaggagacag 556 |||||||||||||||||||| Sbjct: 16729 tggcgaggaggaggagacag 16710
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ctgcgccgccgccactgcgg 326 |||||||||||||||||||| Sbjct: 3101344 ctgcgccgccgccactgcgg 3101325
>gb|AC134869.4| Mus musculus BAC clone RP23-137C6 from chromosome 13, complete sequence Length = 213473 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 aggaggaggagacaggagac 561 |||||||||||||||||||| Sbjct: 104662 aggaggaggagacaggagac 104681
>gb|AC146436.4| Pan troglodytes BAC clone RP43-16B7 from 7, complete sequence Length = 154982 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 ccgccgccgcccgccggggc 258 |||||||||||||||||||| Sbjct: 57435 ccgccgccgcccgccggggc 57454
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ccccgccgccgcccgccggg 256 |||||||||||||||||||| Sbjct: 7633725 ccccgccgccgcccgccggg 7633744 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cccgccgccgcccgccgggg 257 |||||||||||||||||||| Sbjct: 3151899 cccgccgccgcccgccgggg 3151918
>gb|AC165287.2| Mus musculus BAC clone RP24-230H12 from chromosome 14, complete sequence Length = 161004 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 540 cgaggaggaggagacaggag 559 |||||||||||||||||||| Sbjct: 73204 cgaggaggaggagacaggag 73185
>ref|XM_985949.1| PREDICTED: Mus musculus hypothetical protein LOC666780 (LOC666780), mRNA Length = 663 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ccccgccgccgcccgccggg 256 |||||||||||||||||||| Sbjct: 320 ccccgccgccgcccgccggg 339
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cgcctgcggctgccgccgga 496 |||||||||||||||||||| Sbjct: 3685034 cgcctgcggctgccgccgga 3685053
>ref|XM_745316.1| Aspergillus fumigatus Af293 SURF6 domain nucleolar protein (Afu1g06600) partial mRNA Length = 1587 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 agcgtggcgaggaggaggag 552 |||||||||||||||||||| Sbjct: 221 agcgtggcgaggaggaggag 240
>gb|DQ164098.1| Streptomyces hygroscopicus subsp. jinggangensis strain 5008 validamycin cluster, genomic sequence Length = 45164 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cgccgccgcccgccggggcc 259 |||||||||||||||||||| Sbjct: 18460 cgccgccgcccgccggggcc 18479
>gb|AC129216.4| Mus musculus BAC clone RP24-446C11 from chromosome 14, complete sequence Length = 190338 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ccgcccgccggggcccgggc 264 |||||||||||||||||||| Sbjct: 24546 ccgcccgccggggcccgggc 24527
>ref|XM_844285.1| PREDICTED: Canis familiaris similar to collagen, type XXIII, alpha 1 (LOC607556), mRNA Length = 1662 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ccccgccgccgcccgccggg 256 |||||||||||||||||||| Sbjct: 64 ccccgccgccgcccgccggg 45
>ref|XM_545808.2| PREDICTED: Canis familiaris similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) (LOC488691), mRNA Length = 4648 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 ccgccgccgcccgccggggc 258 |||||||||||||||||||| Sbjct: 150 ccgccgccgcccgccggggc 131
>emb|AL136441.16| Human DNA sequence from clone RP11-19D22 on chromosome 13q22.1-22.3 Contains a CpG island, complete sequence Length = 180992 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 gaggaggaggagacaggaga 560 |||||||||||||||||||| Sbjct: 66127 gaggaggaggagacaggaga 66146
>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05, complete sequence Length = 101799 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cccgccgccgcccgccgggg 257 |||||||||||||||||||| Sbjct: 74912 cccgccgccgcccgccgggg 74931
>gb|AC165283.2| Mus musculus BAC clone RP24-348M18 from chromosome 12, complete sequence Length = 171825 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 541 gaggaggaggagacaggaga 560 |||||||||||||||||||| Sbjct: 118039 gaggaggaggagacaggaga 118058
>gb|AC163355.2| Mus musculus BAC clone RP23-11P15 from chromosome 16, complete sequence Length = 225547 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ccccgccgccgcccgccggg 256 |||||||||||||||||||| Sbjct: 2490 ccccgccgccgcccgccggg 2471
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 cggccaccgcgaaccggccc 418 |||||||||||||||||||| Sbjct: 248203 cggccaccgcgaaccggccc 248184
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 gaacgcgagctggacctgga 347 |||||||||||||||||||| Sbjct: 46177 gaacgcgagctggacctgga 46158
>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0096L14, from chromosome 3, complete sequence Length = 131142 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ccccgccgccgcccgccggg 256 |||||||||||||||||||| Sbjct: 81565 ccccgccgccgcccgccggg 81546
>gb|AE005681.1| Caulobacter crescentus CB15 section 7 of 359 of the complete genome Length = 10507 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ggacctggacggggtcgccg 358 |||||||||||||||||||| Sbjct: 3479 ggacctggacggggtcgccg 3460
>gb|AE011953.1| Xanthomonas axonopodis pv. citri str. 306, section 331 of 469 of the complete genome Length = 11018 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 cgcctgcggctgccgccgga 496 |||||||||||||||||||| Sbjct: 8262 cgcctgcggctgccgccgga 8281
>gb|AC021892.16| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0053D03, from chromosome 10, complete sequence Length = 199113 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 agcgtggcgaggaggaggag 552 |||||||||||||||||||| Sbjct: 141848 agcgtggcgaggaggaggag 141867
>gb|AC157567.6| Mus musculus chromosome 5, clone RP23-246I12, complete sequence Length = 157519 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 gaggaggaggagacaggaga 560 |||||||||||||||||||| Sbjct: 8085 gaggaggaggagacaggaga 8066
>gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosome 12, complete sequence Length = 222209 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 cgccgccgccactgcggtga 329 |||||||||||||||||||| Sbjct: 109949 cgccgccgccactgcggtga 109930
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ccccgccgccgcccgccggg 256 |||||||||||||||||||| Sbjct: 811273 ccccgccgccgcccgccggg 811292
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 agcgtggcgaggaggaggag 552 |||||||||||||||||||| Sbjct: 8114631 agcgtggcgaggaggaggag 8114612
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 cctatccccgccgccgcccgccgg 255 |||| ||||||||||||||||||| Sbjct: 8885701 cctagccccgccgccgcccgccgg 8885678
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 518 gcagcggcgatggagagcgtggcgaggaggag 549 |||||||||| || ||||| |||||||||||| Sbjct: 23042453 gcagcggcgacggcgagcgcggcgaggaggag 23042422
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ccccgccgccgcccgccggg 256 |||||||||||||||||||| Sbjct: 7631560 ccccgccgccgcccgccggg 7631579 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cccgccgccgcccgccgggg 257 |||||||||||||||||||| Sbjct: 3152010 cccgccgccgcccgccgggg 3152029
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 ctgcggctgccgccggagcc 499 |||||||||||||||||||| Sbjct: 17962067 ctgcggctgccgccggagcc 17962086 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 gtcgccgttgttgcctgatccgcc 375 |||||||||||||| ||||||||| Sbjct: 6630839 gtcgccgttgttgcttgatccgcc 6630862
>gb|AC102372.8| Mus musculus chromosome 5, clone RP23-262J12, complete sequence Length = 212548 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 gaggaggaggagacaggaga 560 |||||||||||||||||||| Sbjct: 60031 gaggaggaggagacaggaga 60012
>dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004D12 Length = 138136 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 198 cccacgccttgacgaccaccacggcgtcgaac 229 |||| ||||||||||| || |||||||||||| Sbjct: 53316 cccaggccttgacgacgacgacggcgtcgaac 53285
>dbj|AP003859.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1033_B09 Length = 120648 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 cctatccccgccgccgcccgccgg 255 |||| ||||||||||||||||||| Sbjct: 69344 cctagccccgccgccgcccgccgg 69321
>dbj|AP005652.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0015B15 Length = 123083 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ccccgccgccgcccgccggg 256 |||||||||||||||||||| Sbjct: 59729 ccccgccgccgcccgccggg 59748
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 518 gcagcggcgatggagagcgtggcgaggaggag 549 |||||||||| || ||||| |||||||||||| Sbjct: 117667 gcagcggcgacggcgagcgcggcgaggaggag 117636
>dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_B06 Length = 99637 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 ctgcggctgccgccggagcc 499 |||||||||||||||||||| Sbjct: 96700 ctgcggctgccgccggagcc 96719
>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F04 Length = 139563 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 ctgcggctgccgccggagcc 499 |||||||||||||||||||| Sbjct: 23661 ctgcggctgccgccggagcc 23680
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 gtcgccgttgttgcctgatccgcc 375 |||||||||||||| ||||||||| Sbjct: 65214 gtcgccgttgttgcttgatccgcc 65237
>dbj|AK119435.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-A12, full insert sequence Length = 2857 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 198 cccacgccttgacgaccaccacggcgtcgaac 229 |||| ||||||||||| || |||||||||||| Sbjct: 2118 cccaggccttgacgacgacgacggcgtcgaac 2149
>gb|AC002528.1|AC002528 Human BAC clone GS1-542D18 from 7q31-q32, complete sequence Length = 141120 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 ccgccgccgcccgccggggc 258 |||||||||||||||||||| Sbjct: 104122 ccgccgccgcccgccggggc 104141
>ref|NM_208318.1| Eremothecium gossypii ABR019Cp (ABR019C), mRNA Length = 2193 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 ccgcccacagcgcctgcggc 486 |||||||||||||||||||| Sbjct: 364 ccgcccacagcgcctgcggc 345
>gb|AC151994.3| Mus musculus BAC clone RP23-188B20 from 14, complete sequence Length = 208952 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ccgcccgccggggcccgggc 264 |||||||||||||||||||| Sbjct: 145075 ccgcccgccggggcccgggc 145056
>dbj|AK060572.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-C08, full insert sequence Length = 1571 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cccgccgccgcccgccgggg 257 |||||||||||||||||||| Sbjct: 121 cccgccgccgcccgccgggg 140
>dbj|AK058836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-C09, full insert sequence Length = 1102 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 agcgtggcgaggaggaggag 552 |||||||||||||||||||| Sbjct: 102 agcgtggcgaggaggaggag 83
>gb|AY104629.1| Zea mays PCO084748 mRNA sequence Length = 630 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 ccggccgcccacagcgcctg 482 |||||||||||||||||||| Sbjct: 494 ccggccgcccacagcgcctg 475
>gb|AC007059.1|AC007059 Homo sapiens chromosome 19, cosmid R26549, complete sequence Length = 32303 Score = 40.1 bits (20), Expect = 8.1 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 541 gaggaggaggagacaggagacggcggctgcgg 572 ||||||||||||| ||||| |||||||||||| Sbjct: 13124 gaggaggaggaga-aggaggcggcggctgcgg 13154
>gb|AC006128.1|AC006128 Homo sapiens chromosome 19, cosmid F20900, complete sequence Length = 39852 Score = 40.1 bits (20), Expect = 8.1 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 541 gaggaggaggagacaggagacggcggctgcgg 572 ||||||||||||| ||||| |||||||||||| Sbjct: 35081 gaggaggaggaga-aggaggcggcggctgcgg 35111
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 gccttgacgaccaccacggc 222 |||||||||||||||||||| Sbjct: 1432337 gccttgacgaccaccacggc 1432318
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 ttgacgaccaccacggcgtc 225 |||||||||||||||||||| Sbjct: 2103862 ttgacgaccaccacggcgtc 2103843
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ccccgccgccgcccgccggg 256 |||||||||||||||||||| Sbjct: 854970 ccccgccgccgcccgccggg 854951
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 agcgtggcgaggaggaggag 552 |||||||||||||||||||| Sbjct: 8119730 agcgtggcgaggaggaggag 8119711
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ccccgccgccgcccgccggg 256 |||||||||||||||||||| Sbjct: 811273 ccccgccgccgcccgccggg 811292
>emb|BX000500.4|CNS08CDQ Oryza sativa chromosome 12, . BAC OSJNBb0027B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 79383 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ccccgccgccgcccgccggg 256 |||||||||||||||||||| Sbjct: 56651 ccccgccgccgcccgccggg 56632
>emb|CT030736.8| Mouse DNA sequence from clone RP23-396K21 on chromosome 16, complete sequence Length = 181320 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ccccgccgccgcccgccggg 256 |||||||||||||||||||| Sbjct: 140065 ccccgccgccgcccgccggg 140046
>gb|AC132286.3| Mus musculus BAC clone RP24-299C19 from 1, complete sequence Length = 192877 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 ggaggaggagacaggagacg 562 |||||||||||||||||||| Sbjct: 85269 ggaggaggagacaggagacg 85288
>emb|CT030137.13| Mouse DNA sequence from clone RP24-374C21 on chromosome 12, complete sequence Length = 197285 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 gccgccgcccgccggggccc 260 |||||||||||||||||||| Sbjct: 69770 gccgccgcccgccggggccc 69751
>gb|AC163446.2| Mus musculus chromosome 5, clone RP23-151G22, complete sequence Length = 190466 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 gaggaggaggagacaggaga 560 |||||||||||||||||||| Sbjct: 74505 gaggaggaggagacaggaga 74486
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II, complete sequence Length = 867699 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 ccgcccacagcgcctgcggc 486 |||||||||||||||||||| Sbjct: 428878 ccgcccacagcgcctgcggc 428897
>emb|AL731794.13| Mouse DNA sequence from clone RP23-232L4 on chromosome X, complete sequence Length = 142298 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 541 gaggaggaggagacaggaga 560 |||||||||||||||||||| Sbjct: 83731 gaggaggaggagacaggaga 83712 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,022,391 Number of Sequences: 3902068 Number of extensions: 5022391 Number of successful extensions: 108385 Number of sequences better than 10.0: 134 Number of HSP's better than 10.0 without gapping: 138 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 105403 Number of HSP's gapped (non-prelim): 2982 length of query: 598 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 575 effective length of database: 17,143,297,704 effective search space: 9857396179800 effective search space used: 9857396179800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
