>YPGQ_BACSU (P54168) Hypothetical protein ypgQ|
          Length = 205

 Score = 84.0 bits (206), Expect = 4e-16
 Identities = 47/135 (34%), Positives = 73/135 (54%)
 Frame = -2

Query: 558 GLEEGQKEEIVAIITGMGFKNEVSKKLNAETTLEFAIVQDADRLDAIGAIGVARCFTYGG 379
           G+ +   + ++ IIT M F++   K      ++E   VQDADRLDAIGA+G+AR F + G
Sbjct: 84  GVGKENADRVIHIITRMSFRDR-GKLAKEPLSIEGKAVQDADRLDAIGAVGIARAFMFAG 142

Query: 378 SKNSALHDPNVLPRDNLSKEKYMSKEEKQTSINHFHEKLFKLKDMMKTEAGKKRAEKRHK 199
           +K   L+                   ++Q++  HF  KL +LKDMM T+  ++ AE+RH 
Sbjct: 143 AKGHGLYG------------------DEQSAYAHFFHKLLRLKDMMNTDTARELAEERHN 184

Query: 198 FMETFVAEFYEEWSG 154
           FM  FV +  ++  G
Sbjct: 185 FMLQFVRQLEKDIPG 199

>YEDJ_ECOLI (P46144) Hypothetical protein yedJ|
          Length = 231

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 41/107 (38%), Positives = 62/107 (57%)
 Frame = -2

Query: 474 AETTLEFAIVQDADRLDAIGAIGVARCFTYGGSKNSALHDPNVLPRDNLSKEKYMSKEEK 295
           A  T E  IVQDADRL+A+GAIG+AR F   G+   AL D      D  ++ + +  ++K
Sbjct: 114 APLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFD----GEDPFAQHRPL--DDK 167

Query: 294 QTSINHFHEKLFKLKDMMKTEAGKKRAEKRHKFMETFVAEFYEEWSG 154
           + +++HF  KL KL   M+T  GK+ A+    F+  F+A+   E +G
Sbjct: 168 RYALDHFQTKLLKLPQTMQTARGKQLAQHNAHFLVEFMAKLSAELAG 214

>YL803_MIMIV (Q5UR59) Hypothetical protein L803|
          Length = 243

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
 Frame = -2

Query: 453 AIVQDADRLDAIGAIGVARCFTYGGSKNSALHDPNVLPRDNLSKE-----------KYMS 307
           AI +DADRL+AIG IG+ RC  Y        +  +  PR   S+E           +Y +
Sbjct: 133 AIPRDADRLEAIGKIGIQRCTDYANHIKLPYYLDST-PRAKTSEEALSFANRDRFDRYKN 191

Query: 306 KEEKQTSINHFHEKLFKL 253
             +  + I+H+++KL  +
Sbjct: 192 GHKSVSMIDHYYDKLLHI 209

>PGK_HAEDU (Q7VMV0) Phosphoglycerate kinase (EC 2.7.2.3)|
          Length = 391

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = -2

Query: 615 MDRDNAEDMSIVKRFLGEV--GLEEGQKEEIVAIITGMGFKNEVSKKLNAETTLEFAIVQ 442
           +D  NA D+ +  R + +   G+E  Q E +V     +   N+  KK +AE   ++A + 
Sbjct: 78  VDYLNASDLGVPVRLVRDYLDGVEVNQNEIVVLENVRI---NKGEKKNDAELAKKYAALC 134

Query: 441 DADRLDAIGAIGVARCFTYG 382
           D   +DA G    A C TYG
Sbjct: 135 DIFVMDAFGTAHRAECSTYG 154

>HRP_PLABE (Q08168) 58 kDa phosphoprotein (Heat shock-related protein) (HRP)|
          Length = 423

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -2

Query: 360 HDPNVLPRDNLSKEKYMSKEEKQT-SINHFHEK--LFKLKDMMKTEAGKKRAEKRHK 199
           +D N+     L +EKY    EK+   IN   EK  L + K++ K  A KK+AEK +K
Sbjct: 212 YDENLWDMQKLIQEKYKKIYEKRRYKINKEEEKQRLKREKELKKKLAAKKKAEKMYK 268

>EX1_HAEIN (P45188) Exodeoxyribonuclease I (EC 3.1.11.1) (Exonuclease I) (DNA|
           deoxyribophosphodiesterase) (dRPase)
          Length = 473

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
 Frame = +1

Query: 334 IPRKYVRIMQCTVLAPSICKTSCNANRTNCIQTICILHDCKLKSGLCIKLL*NLIFESHP 513
           +P K V I +C +LAP+       ANR    + +C+ +  KL++   I+     IF    
Sbjct: 294 VPLKLVHINKCPILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIF---- 349

Query: 514 CNNGHYFXXXXXXETHLSKKPFDDAH-----ILRIIP 609
            N    F      ET L    F +A      ILR +P
Sbjct: 350 -NEERQFASNDNVETELYNGFFSNADKNNMAILRSLP 385

>DNAK2_SYNPX (Q7U3C4) Chaperone protein dnaK2 (Heat shock protein 70-2) (Heat|
           shock 70 kDa protein 2) (HSP70-2)
          Length = 637

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 336 DNLSKEKYMSKEEKQTSINHFHEKLFKLKDMMKTEAGKKRAEKRHKFMETFVAEFYE 166
           D   +EK   K + +T +    +++ +L D ++ +A  K  EKR K  E   AE Y+
Sbjct: 520 DKEKREKIDLKNQAETLVYQAEKQMGELGDKVEADAKAKVDEKRTKLQEAINAEDYD 576

>UBP13_HUMAN (Q92995) Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 13)
           (Ubiquitin-specific-processing protease 13)
           (Deubiquitinating enzyme 13) (Isopeptidase T-3) (ISOT-3)
          Length = 863

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 567 GEVGLEEGQKEEIVAIITGMGF-KNEVSKKLNA 472
           G  GL+    EEIVAIIT MGF +N+  + L A
Sbjct: 720 GASGLDNQPPEEIVAIITSMGFQRNQAIQALRA 752

>K6PF_BACSU (O34529) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)|
           (Phosphohexokinase)
          Length = 319

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -2

Query: 612 DRDNAEDMSIVKRFLGEVGLEEGQKEEIVAIITGMGFKNEVSKKLNAETTLE 457
           D D  E ++ +KR     G E G+K  I+ +  G+G   E  K++  ET LE
Sbjct: 195 DYDMHEIIARLKR-----GHERGKKHSIIIVAEGVGSGVEFGKRIEEETNLE 241

>FRAP_HUMAN (P42345) FKBP12-rapamycin complex-associated protein (FK506-binding|
            protein 12-rapamycin complex-associated protein 1)
            (Rapamycin target protein) (RAPT1) (Mammalian target of
            rapamycin) (MTOR)
          Length = 2549

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +2

Query: 374  LLPPYVKHLATPIAPIASRRSASCTIANSRVVSALSF--FETSFLNPI 511
            LLPP VK    P AP+ SR++A  T+   R+  +L F  + +  ++PI
Sbjct: 1114 LLPPIVKLFDAPEAPLPSRKAALETV--DRLTESLDFTDYASRIIHPI 1159

>ATP8_PELSU (O79674) ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8)|
           (A6L)
          Length = 55

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 479 SFFETSFLNPIPVIMATISSFCPSSRPTSPRNLLT 583
           S F TS+L  I +++  I S  P++ PT+ +N+LT
Sbjct: 11  SIFITSWLILIIILLPKIKSHIPNNSPTNKKNMLT 45

>CDC15_SCHPO (Q09822) Cell division control protein 15|
          Length = 927

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +2

Query: 413 APIASRRSASCTIANSRVVSALSFFETSFLNPIPVIMATISSFCPSSRPTSPRNL 577
           +P+ SRRS++   +  R  S+LS  ++  ++P P   A   S     RP+S  +L
Sbjct: 702 SPMLSRRSSTLRPSFERSASSLSVRQSDVVSPAPSTRARGQSVSGQQRPSSSMSL 756


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,471,761
Number of Sequences: 219361
Number of extensions: 1929984
Number of successful extensions: 5735
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5728
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)