ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16f21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473484.1| Oryza sativa (japonica cultivar-group), predic... 307 2e-80
2emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4,... 307 2e-80
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 307 2e-80
4dbj|AK073751.1| Oryza sativa (japonica cultivar-group) cDNA clon... 307 2e-80
5ref|NM_111874.1| Arabidopsis thaliana FLD (FLOWERING LOCUS D); a... 82 2e-12
6gb|AY849997.1| Arabidopsis thaliana ecotype Lz-0 flowering locus... 82 2e-12
7gb|AY849996.1| Arabidopsis thaliana ecotype Landsberg erecta flo... 82 2e-12
8gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13... 82 2e-12
9emb|AL358858.19| Human DNA sequence from clone RP11-239I22 on ch... 44 0.54
10gb|AF091877.1|HSUSH2A05 Homo sapiens Usher syndrome type IIa pro... 44 0.54
11emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chro... 44 0.54
12gb|BT015246.1| Drosophila melanogaster LP22668 full insert cDNA 42 2.1
13ref|XM_537829.2| PREDICTED: Canis familiaris similar to Cip1-int... 42 2.1
14gb|AC006659.1| Caenorhabditis elegans fosmid H16O14, complete se... 42 2.1
15emb|AL773517.4| Mouse DNA sequence from clone RP24-170J19 on chr... 42 2.1
16ref|NM_134748.2| Drosophila melanogaster robo3 CG5423-RA (robo3)... 42 2.1
17gb|AC182753.1| Gasterosteus aculeatus clone VMRC28-42C03, comple... 42 2.1
18gb|AC008319.4|AC008319 Drosophila melanogaster, chromosome 2L, r... 42 2.1
19gb|AC010901.8| Homo sapiens BAC clone RP11-544J22 from 2, comple... 42 2.1
20gb|AF312580.1|AF312580 Drosophila melanogaster roundabout 3 (rob... 42 2.1
21gb|AE003586.3| Drosophila melanogaster chromosome 2L, section 5 ... 42 2.1
22gb|AC005421.1|AC005421 Drosophila melanogaster, chromosome 2L, r... 42 2.1
23gb|AC169985.2| Mus musculus BAC clone RP23-289G14 from chromosom... 40 8.4
24gb|AC009256.9| Drosophila melanogaster clone BACR03G18, complete... 40 8.4
25ref|XM_423709.1| PREDICTED: Gallus gallus similar to zinc finger... 40 8.4
26ref|XM_414103.1| PREDICTED: Gallus gallus similar to zinc finger... 40 8.4
27gb|AC147032.3| Pan troglodytes BAC clone RP43-98O19 from 7, comp... 40 8.4
28gb|AC146413.3| Pan troglodytes BAC clone RP43-34F2 from 7, compl... 40 8.4
29gb|AC125186.6| Mus musculus BAC clone RP23-302C16 from chromosom... 40 8.4
30gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.4
31gb|AC116552.2| Homo sapiens chromosome 16 clone RP11-21B21, comp... 40 8.4
32gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.4
33emb|AL590073.6| Human DNA sequence from clone RP11-242O9 on chro... 40 8.4
34gb|AC026467.6| Homo sapiens chromosome 16 clone RP11-410M9, comp... 40 8.4
35gb|AC099494.3| Homo sapiens chromosome 16 clone RP11-1102P22, co... 40 8.4
36gb|AY121406.1| Human echovirus 11 strain WA/2001-10038 capsid pr... 40 8.4
37dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
38dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
39emb|BX933797.1| Gallus gallus finished cDNA, clone ChEST36l17 40 8.4
40gb|AY167105.1| Human echovirus 11 strain Kust/86 polyprotein gen... 40 8.4
41gb|AF191069.1|AF191069 Homo sapiens chromosome 21 clone P704-682... 40 8.4
42gb|AF190641.1|AF190641 Homo sapiens chromosome 21 PAC 704P23131 ... 40 8.4
43dbj|BS000177.1| Pan troglodytes chromosome 22 clone:PTB-118H03, ... 40 8.4
44gb|AE003501.4| Drosophila melanogaster chromosome X, section 53 ... 40 8.4
45dbj|AP001707.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.4
46gb|AC163641.5| Mus musculus BAC clone RP24-445G19 from chromosom... 40 8.4
47gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
48emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311... 40 8.4
49emb|AL691418.9| Mouse DNA sequence from clone RP23-193L14 on chr... 40 8.4
50dbj|AP000390.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 8.4 
>ref|XM_473484.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2436

 Score =  307 bits (155), Expect = 2e-80
 Identities = 230/255 (90%)
 Strand = Plus / Minus

                                                                        
Query: 351  tttagttctactgctgttccggtccgccttaatggaagcaatcacagcatcagccccagg 410
            ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct: 2388 tttagttctactgctgttccgctctgccttaatggatgcaatcacagcatcagcccccgg 2329

                                                                        
Query: 411  accaagacctttcctgccaaccaatttcacacccagtgtttcacagaggtaatgcagcct 470
            ||||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||||
Sbjct: 2328 accaagacctttcctgccaactaatttcacaccaagcttttcacagaggtaatgcagcct 2269

                                                                        
Query: 471  catctcatcaccccctctaacctctctcagctccatagcctgctgccgcgacagtaatgt 530
            ||| |||||||| |||||||||||||| ||||||||||||||||| || || ||||||||
Sbjct: 2268 catttcatcacctcctctaacctctcttagctccatagcctgctgtcgtgatagtaatgt 2209

                                                                        
Query: 531  atacacatagagctgctgctgctggttgaaatgtgactgtagctgctgaaacaacgattt 590
             || ||||| || || || ||||||||||||||||| || || |||||||||||| ||||
Sbjct: 2208 gtagacataaagttgttgttgctggttgaaatgtgattggagttgctgaaacaacaattt 2149

                           
Query: 591  gtttgagtggtgctg 605
             ||||||||||||||
Sbjct: 2148 atttgagtggtgctg 2134
to top
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
             complete sequence
          Length = 147806

 Score =  307 bits (155), Expect = 2e-80
 Identities = 230/255 (90%)
 Strand = Plus / Plus

                                                                         
Query: 351   tttagttctactgctgttccggtccgccttaatggaagcaatcacagcatcagccccagg 410
             ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct: 48102 tttagttctactgctgttccgctctgccttaatggatgcaatcacagcatcagcccccgg 48161

                                                                         
Query: 411   accaagacctttcctgccaaccaatttcacacccagtgtttcacagaggtaatgcagcct 470
             ||||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||||
Sbjct: 48162 accaagacctttcctgccaactaatttcacaccaagcttttcacagaggtaatgcagcct 48221

                                                                         
Query: 471   catctcatcaccccctctaacctctctcagctccatagcctgctgccgcgacagtaatgt 530
             ||| |||||||| |||||||||||||| ||||||||||||||||| || || ||||||||
Sbjct: 48222 catttcatcacctcctctaacctctcttagctccatagcctgctgtcgtgatagtaatgt 48281

                                                                         
Query: 531   atacacatagagctgctgctgctggttgaaatgtgactgtagctgctgaaacaacgattt 590
              || ||||| || || || ||||||||||||||||| || || |||||||||||| ||||
Sbjct: 48282 gtagacataaagttgttgttgctggttgaaatgtgattggagttgctgaaacaacaattt 48341

                            
Query: 591   gtttgagtggtgctg 605
              ||||||||||||||
Sbjct: 48342 atttgagtggtgctg 48356
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  307 bits (155), Expect = 2e-80
 Identities = 230/255 (90%)
 Strand = Plus / Plus

                                                                            
Query: 351      tttagttctactgctgttccggtccgccttaatggaagcaatcacagcatcagccccagg 410
                ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct: 28040876 tttagttctactgctgttccgctctgccttaatggatgcaatcacagcatcagcccccgg 28040935

                                                                            
Query: 411      accaagacctttcctgccaaccaatttcacacccagtgtttcacagaggtaatgcagcct 470
                ||||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||||
Sbjct: 28040936 accaagacctttcctgccaactaatttcacaccaagcttttcacagaggtaatgcagcct 28040995

                                                                            
Query: 471      catctcatcaccccctctaacctctctcagctccatagcctgctgccgcgacagtaatgt 530
                ||| |||||||| |||||||||||||| ||||||||||||||||| || || ||||||||
Sbjct: 28040996 catttcatcacctcctctaacctctcttagctccatagcctgctgtcgtgatagtaatgt 28041055

                                                                            
Query: 531      atacacatagagctgctgctgctggttgaaatgtgactgtagctgctgaaacaacgattt 590
                 || ||||| || || || ||||||||||||||||| || || |||||||||||| ||||
Sbjct: 28041056 gtagacataaagttgttgttgctggttgaaatgtgattggagttgctgaaacaacaattt 28041115

                               
Query: 591      gtttgagtggtgctg 605
                 ||||||||||||||
Sbjct: 28041116 atttgagtggtgctg 28041130
to top
>dbj|AK073751.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068J22, full
            insert sequence
          Length = 2655

 Score =  307 bits (155), Expect = 2e-80
 Identities = 230/255 (90%)
 Strand = Plus / Minus

                                                                        
Query: 351  tttagttctactgctgttccggtccgccttaatggaagcaatcacagcatcagccccagg 410
            ||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct: 2451 tttagttctactgctgttccgctctgccttaatggatgcaatcacagcatcagcccccgg 2392

                                                                        
Query: 411  accaagacctttcctgccaaccaatttcacacccagtgtttcacagaggtaatgcagcct 470
            ||||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||||
Sbjct: 2391 accaagacctttcctgccaactaatttcacaccaagcttttcacagaggtaatgcagcct 2332

                                                                        
Query: 471  catctcatcaccccctctaacctctctcagctccatagcctgctgccgcgacagtaatgt 530
            ||| |||||||| |||||||||||||| ||||||||||||||||| || || ||||||||
Sbjct: 2331 catttcatcacctcctctaacctctcttagctccatagcctgctgtcgtgatagtaatgt 2272

                                                                        
Query: 531  atacacatagagctgctgctgctggttgaaatgtgactgtagctgctgaaacaacgattt 590
             || ||||| || || || ||||||||||||||||| || || |||||||||||| ||||
Sbjct: 2271 gtagacataaagttgttgttgctggttgaaatgtgattggagttgctgaaacaacaattt 2212

                           
Query: 591  gtttgagtggtgctg 605
             ||||||||||||||
Sbjct: 2211 atttgagtggtgctg 2197
to top
>ref|NM_111874.1| Arabidopsis thaliana FLD (FLOWERING LOCUS D); amine oxidase/
            oxidoreductase AT3G10390 (FLD) mRNA, complete cds
          Length = 2370

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 164/205 (80%)
 Strand = Plus / Minus

                                                                        
Query: 379  ttaatggaagcaatcacagcatcagccccaggaccaagacctttcctgccaaccaatttc 438
            ||||| |||||||| || | |||||| |||  |||||||||||| || || |||| ||||
Sbjct: 2309 ttaatagaagcaatgactgaatcagctccaacaccaagaccttttctccccaccagtttc 2250

                                                                        
Query: 439  acacccagtgtttcacagaggtaatgcagcctcatctcatcaccccctctaacctctctc 498
            || || ||||| |||||||| || |  || ||| | |||||||| ||||| || ||||||
Sbjct: 2249 actccaagtgtctcacagagatagtatagtctcttttcatcaccacctctgacttctctc 2190

                                                                        
Query: 499  agctccatagcctgctgccgcgacagtaatgtatacacatagagctgctgctgctggttg 558
            || || | |||||| || |  |  | |||||||||||| |  | ||| ||||||||||||
Sbjct: 2189 aggtcaagagcctgttgtctagttaataatgtatacacctgaatctgttgctgctggttg 2130

                                     
Query: 559  aaatgtgactgtagctgctgaaaca 583
            ||||| ||||| |||||||||||||
Sbjct: 2129 aaatgagactgaagctgctgaaaca 2105
to top
>gb|AY849997.1| Arabidopsis thaliana ecotype Lz-0 flowering locus D (FLD) gene,
            complete cds
          Length = 3321

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 164/205 (80%)
 Strand = Plus / Minus

                                                                        
Query: 379  ttaatggaagcaatcacagcatcagccccaggaccaagacctttcctgccaaccaatttc 438
            ||||| |||||||| || | |||||| |||  |||||||||||| || || |||| ||||
Sbjct: 3229 ttaatagaagcaatgactgaatcagctccaacaccaagaccttttctccccaccagtttc 3170

                                                                        
Query: 439  acacccagtgtttcacagaggtaatgcagcctcatctcatcaccccctctaacctctctc 498
            || || ||||| |||||||| || |  || ||| | |||||||| ||||| || ||||||
Sbjct: 3169 actccaagtgtctcacagagatagtatagtctcttttcatcaccacctctgacttctctc 3110

                                                                        
Query: 499  agctccatagcctgctgccgcgacagtaatgtatacacatagagctgctgctgctggttg 558
            || || | |||||| || |  |  | |||||||||||| |  | ||| ||||||||||||
Sbjct: 3109 aggtcaagagcctgttgtctagttaataatgtatacacctgaatctgttgctgctggttg 3050

                                     
Query: 559  aaatgtgactgtagctgctgaaaca 583
            ||||| ||||| |||||||||||||
Sbjct: 3049 aaatgagactgaagctgctgaaaca 3025
to top
>gb|AY849996.1| Arabidopsis thaliana ecotype Landsberg erecta flowering locus D (FLD)
            gene, complete cds
          Length = 3322

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 164/205 (80%)
 Strand = Plus / Minus

                                                                        
Query: 379  ttaatggaagcaatcacagcatcagccccaggaccaagacctttcctgccaaccaatttc 438
            ||||| |||||||| || | |||||| |||  |||||||||||| || || |||| ||||
Sbjct: 3230 ttaatagaagcaatgactgaatcagctccaacaccaagaccttttctccccaccagtttc 3171

                                                                        
Query: 439  acacccagtgtttcacagaggtaatgcagcctcatctcatcaccccctctaacctctctc 498
            || || ||||| |||||||| || |  || ||| | |||||||| ||||| || ||||||
Sbjct: 3170 actccaagtgtctcacagagatagtatagtctcttttcatcaccacctctgacttctctc 3111

                                                                        
Query: 499  agctccatagcctgctgccgcgacagtaatgtatacacatagagctgctgctgctggttg 558
            || || | |||||| || |  |  | |||||||||||| |  | ||| ||||||||||||
Sbjct: 3110 aggtcaagagcctgttgtctagttaataatgtatacacctgaatctgttgctgctggttg 3051

                                     
Query: 559  aaatgtgactgtagctgctgaaaca 583
            ||||| ||||| |||||||||||||
Sbjct: 3050 aaatgagactgaagctgctgaaaca 3026
to top
>gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete
              sequence
          Length = 118107

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 164/205 (80%)
 Strand = Plus / Plus

                                                                          
Query: 379    ttaatggaagcaatcacagcatcagccccaggaccaagacctttcctgccaaccaatttc 438
              ||||| |||||||| || | |||||| |||  |||||||||||| || || |||| ||||
Sbjct: 115599 ttaatagaagcaatgactgaatcagctccaacaccaagaccttttctccccaccagtttc 115658

                                                                          
Query: 439    acacccagtgtttcacagaggtaatgcagcctcatctcatcaccccctctaacctctctc 498
              || || ||||| |||||||| || |  || ||| | |||||||| ||||| || ||||||
Sbjct: 115659 actccaagtgtctcacagagatagtatagtctcttttcatcaccacctctgacttctctc 115718

                                                                          
Query: 499    agctccatagcctgctgccgcgacagtaatgtatacacatagagctgctgctgctggttg 558
              || || | |||||| || |  |  | |||||||||||| |  | ||| ||||||||||||
Sbjct: 115719 aggtcaagagcctgttgtctagttaataatgtatacacctgaatctgttgctgctggttg 115778

                                       
Query: 559    aaatgtgactgtagctgctgaaaca 583
              ||||| ||||| |||||||||||||
Sbjct: 115779 aaatgagactgaagctgctgaaaca 115803
to top
>emb|AL358858.19| Human DNA sequence from clone RP11-239I22 on chromosome 1 Contains part
             of the USH2A gene for Usher syndrome 2A (autosomal
             recessive, mild), complete sequence
          Length = 93856

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 90    aaattcgatgtcatgaaaatct 111
             ||||||||||||||||||||||
Sbjct: 55172 aaattcgatgtcatgaaaatct 55193
to top
>gb|AF091877.1|HSUSH2A05 Homo sapiens Usher syndrome type IIa protein gene, exons 6, 7, and 8
          Length = 3175

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 90   aaattcgatgtcatgaaaatct 111
            ||||||||||||||||||||||
Sbjct: 2473 aaattcgatgtcatgaaaatct 2452
to top
>emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chromosome 4, complete
              sequence
          Length = 191676

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 537    atagagctgctgctgctggttgaaat 562
              |||||||||||||||||| |||||||
Sbjct: 118167 atagagctgctgctgctgtttgaaat 118192
to top
>gb|BT015246.1| Drosophila melanogaster LP22668 full insert cDNA
          Length = 5514

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 540  gagctgctgctgctggttgaa 560
            |||||||||||||||||||||
Sbjct: 3931 gagctgctgctgctggttgaa 3911
to top
>ref|XM_537829.2| PREDICTED: Canis familiaris similar to Cip1-interacting zinc finger
           protein (LOC480709), mRNA
          Length = 3162

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 540 gagctgctgctgctggttgaa 560
           |||||||||||||||||||||
Sbjct: 558 gagctgctgctgctggttgaa 538
to top
>gb|AC006659.1| Caenorhabditis elegans fosmid H16O14, complete sequence
          Length = 26644

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 90    aaattcgatgtcatgaaaatc 110
             |||||||||||||||||||||
Sbjct: 24878 aaattcgatgtcatgaaaatc 24858
to top
>emb|AL773517.4| Mouse DNA sequence from clone RP24-170J19 on chromosome 4 Contains a
             t-complex protein 1 (Tcp1) pseudogene, complete sequence
          Length = 167940

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 536   catagagctgctgctgctggt 556
             |||||||||||||||||||||
Sbjct: 48631 catagagctgctgctgctggt 48651
to top
>ref|NM_134748.2| Drosophila melanogaster robo3 CG5423-RA (robo3), mRNA
          Length = 4243

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 540  gagctgctgctgctggttgaa 560
            |||||||||||||||||||||
Sbjct: 3530 gagctgctgctgctggttgaa 3510
to top
>gb|AC182753.1| Gasterosteus aculeatus clone VMRC28-42C03, complete sequence
          Length = 133894

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 542   gctgctgctgctggttgaaat 562
             |||||||||||||||||||||
Sbjct: 13041 gctgctgctgctggttgaaat 13021
to top
>gb|AC008319.4|AC008319 Drosophila melanogaster, chromosome 2L, region 21E-22A, BAC clone
             BACR38A03, complete sequence
          Length = 189315

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 540   gagctgctgctgctggttgaa 560
             |||||||||||||||||||||
Sbjct: 22813 gagctgctgctgctggttgaa 22833
to top
>gb|AC010901.8| Homo sapiens BAC clone RP11-544J22 from 2, complete sequence
          Length = 78185

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 445  agtgtttcacagaggtaatgc 465
            |||||||||||||||||||||
Sbjct: 8592 agtgtttcacagaggtaatgc 8612
to top
>gb|AF312580.1|AF312580 Drosophila melanogaster roundabout 3 (robo3) mRNA, complete cds
          Length = 4306

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 540  gagctgctgctgctggttgaa 560
            |||||||||||||||||||||
Sbjct: 3597 gagctgctgctgctggttgaa 3577
to top
>gb|AE003586.3| Drosophila melanogaster chromosome 2L, section 5 of 83 of the complete
             sequence
          Length = 306696

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 540   gagctgctgctgctggttgaa 560
             |||||||||||||||||||||
Sbjct: 58390 gagctgctgctgctggttgaa 58370
to top
>gb|AC005421.1|AC005421 Drosophila melanogaster, chromosome 2L, region 22A1-22A1, P1 clone
             DS03601, complete sequence
          Length = 69992

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 540   gagctgctgctgctggttgaa 560
             |||||||||||||||||||||
Sbjct: 64496 gagctgctgctgctggttgaa 64476
to top
>gb|AC169985.2| Mus musculus BAC clone RP23-289G14 from chromosome 13, complete
             sequence
          Length = 218393

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 535   acatagagctgctgctgctg 554
             ||||||||||||||||||||
Sbjct: 64780 acatagagctgctgctgctg 64761
to top
>gb|AC009256.9| Drosophila melanogaster clone BACR03G18, complete sequence
          Length = 179931

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   tttagcagaaggttggggtt 316
             ||||||||||||||||||||
Sbjct: 83908 tttagcagaaggttggggtt 83927
to top
>ref|XM_423709.1| PREDICTED: Gallus gallus similar to zinc finger protein 423; Smad-
           and Olf-interacting zinc finger protein; OLF-1/EBF
           associated zinc finger gene (LOC426032), partial mRNA
          Length = 2174

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 387 agcaatcacagcatcagccc 406
           ||||||||||||||||||||
Sbjct: 930 agcaatcacagcatcagccc 949
to top
>ref|XM_414103.1| PREDICTED: Gallus gallus similar to zinc finger protein 423; Smad-
           and Olf-interacting zinc finger protein; OLF-1/EBF
           associated zinc finger gene (LOC415738), mRNA
          Length = 3481

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 387 agcaatcacagcatcagccc 406
           ||||||||||||||||||||
Sbjct: 73  agcaatcacagcatcagccc 92
to top
>gb|AC147032.3| Pan troglodytes BAC clone RP43-98O19 from 7, complete sequence
          Length = 146431

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   atccagagaatcagtagtca 286
             ||||||||||||||||||||
Sbjct: 42781 atccagagaatcagtagtca 42800
to top
>gb|AC146413.3| Pan troglodytes BAC clone RP43-34F2 from 7, complete sequence
          Length = 160890

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   atccagagaatcagtagtca 286
             ||||||||||||||||||||
Sbjct: 26961 atccagagaatcagtagtca 26980
to top
>gb|AC125186.6| Mus musculus BAC clone RP23-302C16 from chromosome 1, complete sequence
          Length = 192042

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 436    ttcacacccagtgtttcaca 455
              ||||||||||||||||||||
Sbjct: 136735 ttcacacccagtgtttcaca 136716
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 8        aactaaccagcttctccttt 27
                ||||||||||||||||||||
Sbjct: 13103388 aactaaccagcttctccttt 13103407
to top
>gb|AC116552.2| Homo sapiens chromosome 16 clone RP11-21B21, complete sequence
          Length = 176797

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 480    accccctctaacctctctcagctc 503
              |||||||||||||| |||||||||
Sbjct: 136906 accccctctaacctatctcagctc 136929
to top
>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07,
              from chromosome 3, complete sequence
          Length = 151173

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      aactaaccagcttctccttt 27
              ||||||||||||||||||||
Sbjct: 123250 aactaaccagcttctccttt 123231
to top
>emb|AL590073.6| Human DNA sequence from clone RP11-242O9 on chromosome X, complete
             sequence
          Length = 80864

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   aacaacgaagacaacaactc 251
             ||||||||||||||||||||
Sbjct: 44144 aacaacgaagacaacaactc 44163
to top
>gb|AC026467.6| Homo sapiens chromosome 16 clone RP11-410M9, complete sequence
          Length = 148054

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 480   accccctctaacctctctcagctc 503
             |||||||||||||| |||||||||
Sbjct: 13835 accccctctaacctatctcagctc 13858
to top
>gb|AC099494.3| Homo sapiens chromosome 16 clone RP11-1102P22, complete sequence
          Length = 143557

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 547   tgctgctggttgaaatgtga 566
             ||||||||||||||||||||
Sbjct: 75766 tgctgctggttgaaatgtga 75747
to top
>gb|AY121406.1| Human echovirus 11 strain WA/2001-10038 capsid protein VP1 gene,
           partial cds
          Length = 876

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 ccatcaaattatgtacatcc 270
           ||||||||||||||||||||
Sbjct: 423 ccatcaaattatgtacatcc 442
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 463     tgcagcctcatctcatcacc 482
               ||||||||||||||||||||
Sbjct: 1033566 tgcagcctcatctcatcacc 1033547
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 8        aactaaccagcttctccttt 27
                ||||||||||||||||||||
Sbjct: 13100163 aactaaccagcttctccttt 13100182
to top
>emb|BX933797.1| Gallus gallus finished cDNA, clone ChEST36l17
          Length = 1120

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 387 agcaatcacagcatcagccc 406
           ||||||||||||||||||||
Sbjct: 443 agcaatcacagcatcagccc 462
to top
>gb|AY167105.1| Human echovirus 11 strain Kust/86 polyprotein gene, complete cds
          Length = 7385

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 251  ccatcaaattatgtacatcc 270
            ||||||||||||||||||||
Sbjct: 2854 ccatcaaattatgtacatcc 2873
to top
>gb|AF191069.1|AF191069 Homo sapiens chromosome 21 clone P704-682K20 map 21q22.1, complete
            sequence
          Length = 108965

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 139  tcatcaaactatcaccaaat 158
            ||||||||||||||||||||
Sbjct: 1478 tcatcaaactatcaccaaat 1459
to top
>gb|AF190641.1|AF190641 Homo sapiens chromosome 21 PAC 704P23131 map 21q22.1, complete sequence
          Length = 89102

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   tcatcaaactatcaccaaat 158
             ||||||||||||||||||||
Sbjct: 59996 tcatcaaactatcaccaaat 59977
to top
>dbj|BS000177.1| Pan troglodytes chromosome 22 clone:PTB-118H03, map 22, complete
             sequences
          Length = 267172

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   tcatcaaactatcaccaaat 158
             ||||||||||||||||||||
Sbjct: 72480 tcatcaaactatcaccaaat 72461
to top
>gb|AE003501.4| Drosophila melanogaster chromosome X, section 53 of 74 of the complete
              sequence
          Length = 323840

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    tttagcagaaggttggggtt 316
              ||||||||||||||||||||
Sbjct: 118982 tttagcagaaggttggggtt 119001
to top
>dbj|AP001707.1| Homo sapiens genomic DNA, chromosome 21q, section 51/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   tcatcaaactatcaccaaat 158
             ||||||||||||||||||||
Sbjct: 28049 tcatcaaactatcaccaaat 28030
to top
>gb|AC163641.5| Mus musculus BAC clone RP24-445G19 from chromosome 13, complete
             sequence
          Length = 190073

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 535   acatagagctgctgctgctg 554
             ||||||||||||||||||||
Sbjct: 52113 acatagagctgctgctgctg 52094
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 463     tgcagcctcatctcatcacc 482
               ||||||||||||||||||||
Sbjct: 1033566 tgcagcctcatctcatcacc 1033547
to top
>emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311_G04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 97056

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 463   tgcagcctcatctcatcacc 482
             ||||||||||||||||||||
Sbjct: 28837 tgcagcctcatctcatcacc 28818
to top
>emb|AL691418.9| Mouse DNA sequence from clone RP23-193L14 on chromosome X, complete
              sequence
          Length = 214219

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 40     gcacatctcaaacacaagcttctt 63
              |||||| |||||||||||||||||
Sbjct: 133466 gcacatgtcaaacacaagcttctt 133489
to top
>dbj|AP000390.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:B347N6, complete sequence
          Length = 50188

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   tcatcaaactatcaccaaat 158
             ||||||||||||||||||||
Sbjct: 29629 tcatcaaactatcaccaaat 29610


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,289,816
Number of Sequences: 3902068
Number of extensions: 6289816
Number of successful extensions: 135839
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135518
Number of HSP's gapped (non-prelim): 321
length of query: 617
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 594
effective length of database: 17,143,297,704
effective search space: 10183118836176
effective search space used: 10183118836176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top