No.
Definition
Score (bits)
E Value
1 ref|NM_185701.1| Oryza sativa (japonica cultivar-group), Ozsa805...
60
1e-05
2 ref|NM_185691.1| Oryza sativa (japonica cultivar-group), Ozsa804...
60
1e-05
3 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
60
1e-05
4 dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D...
60
1e-05
5 dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D...
60
1e-05
6 gb|BT016483.1| Zea mays clone Contig316 mRNA sequence
58
4e-05
7 gb|BT018033.1| Zea mays clone EL01N0530E08.c mRNA sequence
58
4e-05
8 ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa804...
46
0.16
9 ref|XM_476309.1| Oryza sativa (japonica cultivar-group), predic...
46
0.16
10 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
46
0.16
11 dbj|AP005398.3| Oryza sativa (japonica cultivar-group) genomic D...
46
0.16
12 dbj|AK065581.1| Oryza sativa (japonica cultivar-group) cDNA clon...
46
0.16
13 gb|AC145935.3| Gallus gallus BAC clone CH261-42P15 from chromoso...
44
0.61
14 ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa804...
42
2.4
15 ref|XM_476310.1| Oryza sativa (japonica cultivar-group), predic...
42
2.4
16 gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
40
9.6
17 gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
40
9.6
18 gb|AF203743.1| Eonycteris spelaea 16S ribosomal RNA gene, comple...
40
9.6
19 emb|Y18135.1|NTA18135 Nicotiana tabacum mRNA for PCNA1 protein
40
9.6
20 emb|Y16796.1|PSPCNA Pisum sativum mRNA for proliferating cell nu...
40
9.6
21 gb|AC007953.21| Homo sapiens 3 BAC RP11-2L8 (Roswell Park Cancer...
40
9.6
22 gb|AC103549.6| Homo sapiens 3 BAC RP11-795G18 (Roswell Park Canc...
40
9.6
23 gb|AE000783.1| Borrelia burgdorferi B31, complete genome
40
9.6
24 dbj|AP005651.3| Oryza sativa (japonica cultivar-group) genomic D...
40
9.6
25 dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic D...
40
9.6
26 dbj|AB016870.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...
40
9.6
27 dbj|AK111474.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
9.6
28 dbj|AB008186.1| Pisum sativum mRNA for proliferating cell nuclea...
40
9.6
29 emb|AL713979.6| Mouse DNA sequence from clone RP23-434O7 on chro...
40
9.6
>dbj|AP008212.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 60.0 bits (30), Expect = 1e-05
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 543 ggccttggacactgagggtagtagttgaat 572
||||||||||||||||||||||||||||||
Sbjct: 3900954 ggccttggacactgagggtagtagttgaat 3900925
Score = 60.0 bits (30), Expect = 1e-05
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 543 ggccttggacactgagggtagtagttgaat 572
||||||||||||||||||||||||||||||
Sbjct: 3889131 ggccttggacactgagggtagtagttgaat 3889102
Score = 60.0 bits (30), Expect = 1e-05
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 543 ggccttggacactgagggtagtagttgaat 572
||||||||||||||||||||||||||||||
Sbjct: 3851075 ggccttggacactgagggtagtagttgaat 3851046
Score = 46.1 bits (23), Expect = 0.16
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 538 ggtccggccttggacactgagggtagtagttgaat 572
|||| ||||||||||| |||||||||||||||||
Sbjct: 3905450 ggtcaggccttggacagggagggtagtagttgaat 3905416
Score = 46.1 bits (23), Expect = 0.16
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 538 ggtccggccttggacactgagggtagtagttgaat 572
|||| ||||||||||| |||||||||||||||||
Sbjct: 3893559 ggtcaggccttggacagggagggtagtagttgaat 3893525
Score = 46.1 bits (23), Expect = 0.16
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 538 ggtccggccttggacactgagggtagtagttgaat 572
|||| ||||||||||| |||||||||||||||||
Sbjct: 3855571 ggtcaggccttggacagggagggtagtagttgaat 3855537
Score = 44.1 bits (22), Expect = 0.61
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 344 aaccctatgcaccaagcttttgaaaaacccattgctca 381
||||||||||||| |||| || |||| |||||||||||
Sbjct: 3902973 aaccctatgcaccgagctcttaaaaatcccattgctca 3902936
Score = 44.1 bits (22), Expect = 0.61
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 344 aaccctatgcaccaagcttttgaaaaacccattgctca 381
||||||||||||| |||| || |||| |||||||||||
Sbjct: 3891150 aaccctatgcaccgagctcttaaaaatcccattgctca 3891113
Score = 44.1 bits (22), Expect = 0.61
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 344 aaccctatgcaccaagcttttgaaaaacccattgctca 381
||||||||||||| |||| || |||| |||||||||||
Sbjct: 3853094 aaccctatgcaccgagctcttaaaaatcccattgctca 3853057
>dbj|AP002069.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0015E04
Length = 152046
Score = 60.0 bits (30), Expect = 1e-05
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 543 ggccttggacactgagggtagtagttgaat 572
||||||||||||||||||||||||||||||
Sbjct: 147085 ggccttggacactgagggtagtagttgaat 147056
Score = 60.0 bits (30), Expect = 1e-05
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 543 ggccttggacactgagggtagtagttgaat 572
||||||||||||||||||||||||||||||
Sbjct: 109029 ggccttggacactgagggtagtagttgaat 109000
Score = 46.1 bits (23), Expect = 0.16
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 538 ggtccggccttggacactgagggtagtagttgaat 572
|||| ||||||||||| |||||||||||||||||
Sbjct: 151581 ggtcaggccttggacagggagggtagtagttgaat 151547
Score = 46.1 bits (23), Expect = 0.16
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 538 ggtccggccttggacactgagggtagtagttgaat 572
|||| ||||||||||| |||||||||||||||||
Sbjct: 113525 ggtcaggccttggacagggagggtagtagttgaat 113491
Score = 44.1 bits (22), Expect = 0.61
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 344 aaccctatgcaccaagcttttgaaaaacccattgctca 381
||||||||||||| |||| || |||| |||||||||||
Sbjct: 149104 aaccctatgcaccgagctcttaaaaatcccattgctca 149067
Score = 44.1 bits (22), Expect = 0.61
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 344 aaccctatgcaccaagcttttgaaaaacccattgctca 381
||||||||||||| |||| || |||| |||||||||||
Sbjct: 111048 aaccctatgcaccgagctcttaaaaatcccattgctca 111011
>emb|AL713979.6 | Mouse DNA sequence from clone RP23-434O7 on chromosome X, complete
sequence
Length = 148507
Score = 40.1 bits (20), Expect = 9.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 agtgtcatggtatttttcca 204
||||||||||||||||||||
Sbjct: 139391 agtgtcatggtatttttcca 139410
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,691,703
Number of Sequences: 3902068
Number of extensions: 5691703
Number of successful extensions: 100740
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100559
Number of HSP's gapped (non-prelim): 181
length of query: 701
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 678
effective length of database: 17,143,297,704
effective search space: 11623155843312
effective search space used: 11623155843312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)