ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16f13 |
|---|---|
| Clone Library Name | barley_pub |
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 35.0 bits (79), Expect = 0.14 Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Frame = +3 Query: 216 AGPRRRRGIPS-RAVDGGEPPQGGHLELEDADVLGGLPEQHVDIGVPGVRDYLLELPQPP 392 AGP +G P R VDG P G + L GLP + ++G+PGVR P Sbjct: 441 AGPPGAKGEPGPRGVDGQSIP--GLPGKDGRPGLDGLPGRKGEMGLPGVRG-----PPGD 493 Query: 393 QHHVLEGPPVHQRCHHPLGLSHREG--GLP 476 + L GPP + P G R+G GLP Sbjct: 494 SLNGLPGPPGPRGPQGPKGYDGRDGAPGLP 523 Score = 28.9 bits (63), Expect = 9.9 Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 4/88 (4%) Frame = +3 Query: 216 AGPRRRRGIPSRAVDGGEPPQGGHLELEDADVLGGLPEQHVDIGVPGVRDYLLELPQPP- 392 AGPR + G P G P G L+ + GLP Q + G PG RD PP Sbjct: 302 AGPRGKEGRPGLP---GPPGFKGDRGLDGLPGVPGLPGQKGEAGFPG-RDGAKGARGPPG 357 Query: 393 ---QHHVLEGPPVHQRCHHPLGLSHREG 467 +GPP P GL REG Sbjct: 358 PPGGGEFSDGPP------GPPGLPGREG 379
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 33.9 bits (76), Expect = 0.31 Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 10/124 (8%) Frame = +3 Query: 144 PPTQLMHNCIHS-----GAQNL*PWALRWAGPRRRRGIPSRAVDGGEPPQGGHL-----E 293 PP H+ ++S G N P L+ P G + + P G + Sbjct: 482 PPAMSPHHSLNSAGPSPGMPNSGPSPLQ--SPAGPNGPNNNNSNNNNGPMMGQMIPNAVP 539 Query: 294 LEDADVLGGLPEQHVDIGVPGVRDYLLELPQPPQHHVLEGPPVHQRCHHPLGLSHREGGL 473 ++ +GG P H +PG+ + PQ P H GPP +HP H GG Sbjct: 540 MQHQQHMGGGPPGHGPGPMPGMGMNQMLPPQQPSHL---GPPHPNMMNHPHHPHHHPGGP 596 Query: 474 PSHL 485 P H+ Sbjct: 597 PPHM 600
>HEMH_RHOBA (Q7UFZ7) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 351 Score = 32.7 bits (73), Expect = 0.68 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = -2 Query: 245 WDAAPPSRSGPPQRPWLE 192 WD SRSGPP +PWLE Sbjct: 216 WDLVYQSRSGPPSQPWLE 233
>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor| Length = 1496 Score = 32.3 bits (72), Expect = 0.89 Identities = 19/53 (35%), Positives = 25/53 (47%) Frame = +3 Query: 204 ALRWAGPRRRRGIPSRAVDGGEPPQGGHLELEDADVLGGLPEQHVDIGVPGVR 362 A+ +AGP+ G P + GEP Q G L G P H GVPG++ Sbjct: 841 AVGFAGPQGSDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLK 893
>HEMH_LEIXX (Q6AHF2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 389 Score = 32.0 bits (71), Expect = 1.2 Identities = 12/18 (66%), Positives = 12/18 (66%) Frame = -2 Query: 245 WDAAPPSRSGPPQRPWLE 192 WD SRSGPP PWLE Sbjct: 255 WDLVYQSRSGPPSMPWLE 272
>Y381_TREPA (O83396) Hypothetical protein TP0381| Length = 238 Score = 30.8 bits (68), Expect = 2.6 Identities = 16/29 (55%), Positives = 18/29 (62%) Frame = +1 Query: 445 LAFPTVKVAFLLISLCVSLPLSLPRLLCH 531 L F VA LL +L V LP +LPRLL H Sbjct: 18 LHFAIASVAVLLSALFVLLPFALPRLLAH 46
>RNPA_NOCFA (Q5YMR7) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP| protein) (RNase P protein) (Protein C5) Length = 156 Score = 30.8 bits (68), Expect = 2.6 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Frame = -2 Query: 440 VVASLMHRRPFQHMVLRRLRELKKIVPDARDADVDVLLR-----QTAEYICILELKVAAL 276 +V+ + +H V RRLR + + D AD DV++R TA+ + + L Sbjct: 68 IVSKAVGSAVVRHRVARRLRHMCATLVDEVPADADVVIRALPGAATADSAELARQVRSGL 127 Query: 275 RRLSAIYGA*WDAAPPSRSGPPQR 204 R+L G AP + SG R Sbjct: 128 RKLGVTPGGGRSPAPRAHSGARPR 151
>PIF3_ARATH (O80536) Phytochrome-interacting factor 3 (Phytochrome-associated| protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008) Length = 524 Score = 30.8 bits (68), Expect = 2.6 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 2/108 (1%) Frame = -2 Query: 527 HSNLGRERGRDTQREMRRKATFTVGKAK--GVVASLMHRRPFQHMVLRRLRELKKIVPDA 354 HS E D ++E T K V +L RR + + ++R L++++P+ Sbjct: 315 HSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRR-RDRINEKMRALQELIPNC 373 Query: 353 RDADVDVLLRQTAEYICILELKVAALRRLSAIYGA*WDAAPPSRSGPP 210 D +L + EY+ L+L+V + S Y PP+ PP Sbjct: 374 NKVDKASMLDEAIEYLKSLQLQVQIMSMASGYY------LPPAVMFPP 415
>DPY2_CAEEL (P35799) Cuticle collagen dpy-2 precursor (Protein dumpy-2)| Length = 360 Score = 30.4 bits (67), Expect = 3.4 Identities = 22/67 (32%), Positives = 28/67 (41%) Frame = +3 Query: 219 GPRRRRGIPSRAVDGGEPPQGGHLELEDADVLGGLPEQHVDIGVPGVRDYLLELPQPPQH 398 GPR G P D GE GG + G P IG PG + + + P+ Sbjct: 174 GPRGVPGHPGFPGDPGEYGIGGRPGSDGMPGKPGDPGLAGPIGPPGESGPIGDKGRTPEA 233 Query: 399 HVLEGPP 419 HV+ GPP Sbjct: 234 HVIPGPP 240
>HEMH_MYCTU (P0A576) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 344 Score = 30.4 bits (67), Expect = 3.4 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = -2 Query: 245 WDAAPPSRSGPPQRPWLE 192 +D A SRSGPPQ PWLE Sbjct: 207 FDLAWQSRSGPPQVPWLE 224
>HEMH_MYCBO (P0A577) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 344 Score = 30.4 bits (67), Expect = 3.4 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = -2 Query: 245 WDAAPPSRSGPPQRPWLE 192 +D A SRSGPPQ PWLE Sbjct: 207 FDLAWQSRSGPPQVPWLE 224
>HEMH_PROFR (P72183) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 352 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = -2 Query: 245 WDAAPPSRSGPPQRPWLEVLSPRVDAIVH*L---GRRNISC 132 W+ A SRSG P+ PWLE P ++ ++ L G R++ C Sbjct: 219 WELAYQSRSGSPRTPWLE---PDINDVITRLAGEGVRDVIC 256
>MEIS2_MOUSE (P97367) Homeobox protein Meis2 (Meis1-related protein 1)| Length = 477 Score = 30.0 bits (66), Expect = 4.4 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +3 Query: 381 PQPPQHHVLEGPPVHQRCHHPLGLSHREGGLPSHLSLCISPSL 509 P PP HH+ GPP+H H+ H +P+ + ++ +L Sbjct: 32 PIPPVHHLNHGPPLHATQHYGAHAPH-PNVMPASMGSAVNDAL 73
>MEIS2_HUMAN (O14770) Homeobox protein Meis2 (Meis1-related protein 1)| Length = 477 Score = 30.0 bits (66), Expect = 4.4 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +3 Query: 381 PQPPQHHVLEGPPVHQRCHHPLGLSHREGGLPSHLSLCISPSL 509 P PP HH+ GPP+H H+ H +P+ + ++ +L Sbjct: 32 PIPPVHHLNHGPPLHATQHYGAHAPH-PNVMPASMGSAVNDAL 73
>DNAA_STRCH (Q9ZH75) Chromosomal replication initiator protein dnaA| Length = 624 Score = 30.0 bits (66), Expect = 4.4 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 2/76 (2%) Frame = +3 Query: 207 LRWAGPRRRRGIPSRAVDGGEP--PQGGHLELEDADVLGGLPEQHVDIGVPGVRDYLLEL 380 L W PR G R GEP + E E+ PEQ + Y Sbjct: 167 LSWQQPRHG-GYQDREQPSGEPYRESESYRERENEQYREQAPEQWR-------QPYGTGR 218 Query: 381 PQPPQHHVLEGPPVHQ 428 PQ PQH GPP HQ Sbjct: 219 PQQPQHDYRSGPPEHQ 234
>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein| Length = 1049 Score = 29.6 bits (65), Expect = 5.8 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Frame = +3 Query: 381 PQPPQH--HVLEGPPVHQRC--HHPLGLSHREGGLPSHLSLCISPSLPP 515 PQPPQ + PP Q P G S GGLP L+ +P PP Sbjct: 4 PQPPQQTSQPQQPPPTQQAVARRSPGGTSPPNGGLPGPLTATAAPPGPP 52
>PTN1_RAT (P20417) Tyrosine-protein phosphatase non-receptor type 1 (EC| 3.1.3.48) (Protein-tyrosine phosphatase 1B) (PTP-1B) Length = 432 Score = 29.3 bits (64), Expect = 7.6 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = -3 Query: 61 CGHTWEFVWQQK 26 CGH WE VW+QK Sbjct: 92 CGHFWEMVWEQK 103
>PTN1_MOUSE (P35821) Tyrosine-protein phosphatase non-receptor type 1 (EC| 3.1.3.48) (Protein-tyrosine phosphatase 1B) (PTP-1B) (Protein-protein-tyrosine phosphatase HA2) (PTP-HA2) Length = 432 Score = 29.3 bits (64), Expect = 7.6 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = -3 Query: 61 CGHTWEFVWQQK 26 CGH WE VW+QK Sbjct: 92 CGHFWEMVWEQK 103
>LZTS2_HUMAN (Q9BRK4) Leucine zipper putative tumor suppressor 2 (Protein| LAPSER1) Length = 669 Score = 29.3 bits (64), Expect = 7.6 Identities = 20/52 (38%), Positives = 26/52 (50%) Frame = +3 Query: 381 PQPPQHHVLEGPPVHQRCHHPLGLSHREGGLPSHLSLCISPSLPPQVAVSLT 536 P PP+HH GPP GL GG + LC P++PP+ AV +T Sbjct: 42 PAPPRHH---GPPGPTFFRQQDGL--LRGGYEAQEPLC--PAVPPRKAVPVT 86
>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)| Length = 1362 Score = 29.3 bits (64), Expect = 7.6 Identities = 21/59 (35%), Positives = 25/59 (42%) Frame = +3 Query: 216 AGPRRRRGIPSRAVDGGEPPQGGHLELEDADVLGGLPEQHVDIGVPGVRDYLLELPQPP 392 AGPR G+P + G P G L A GLP G+PG R +P PP Sbjct: 277 AGPRGEIGLPGSSGPVGPPGNPGANGLPGAKGAAGLPGVAGAPGLPGPRG----IPGPP 331
>PTN1_HUMAN (P18031) Tyrosine-protein phosphatase non-receptor type 1 (EC| 3.1.3.48) (Protein-tyrosine phosphatase 1B) (PTP-1B) Length = 435 Score = 29.3 bits (64), Expect = 7.6 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = -3 Query: 61 CGHTWEFVWQQK 26 CGH WE VW+QK Sbjct: 92 CGHFWEMVWEQK 103
>PTN1_CHICK (O13016) Tyrosine-protein phosphatase non-receptor type 1 (EC| 3.1.3.48) (Protein-tyrosine phosphatase 1B) (PTP-1B) (CPTP1) Length = 434 Score = 29.3 bits (64), Expect = 7.6 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = -3 Query: 61 CGHTWEFVWQQK 26 CGH WE VW+QK Sbjct: 92 CGHFWEMVWEQK 103
>SETD7_MOUSE (Q8VHL1) Histone-lysine N-methyltransferase, H3 lysine-4 specific| SET7 (EC 2.1.1.43) (Histone H3-K4 methyltransferase) (H3-K4-HMTase) (SET domain-containing protein 7) Length = 366 Score = 28.9 bits (63), Expect = 9.9 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = -2 Query: 305 CILELK-VAALRRLSAIYGA*WDAAPPSRSGPPQRPWLEV 189 CI L+ V A L+ YG +D +PP +SGP W +V Sbjct: 318 CIRTLRAVEAEEELTVAYG--YDHSPPGKSGPEAPEWYQV 355
>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial| collagen) Length = 703 Score = 28.9 bits (63), Expect = 9.9 Identities = 17/48 (35%), Positives = 21/48 (43%) Frame = +3 Query: 219 GPRRRRGIPSRAVDGGEPPQGGHLELEDADVLGGLPEQHVDIGVPGVR 362 G R G+P D GEP + G + LGG P G+PG R Sbjct: 325 GDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRR 372
>NRTN_MOUSE (P97463) Neurturin precursor| Length = 195 Score = 28.9 bits (63), Expect = 9.9 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = +3 Query: 186 QNL*PWALRWAGPRRRRGIPSRAVDGGEPPQG 281 + L PWA R GPRRR G R G P G Sbjct: 71 RELSPWAARIPGPRRRAGPRRRRARPGARPCG 102
>CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Lethal protein 2)| Length = 1758 Score = 28.9 bits (63), Expect = 9.9 Identities = 18/47 (38%), Positives = 22/47 (46%) Frame = +3 Query: 216 AGPRRRRGIPSRAVDGGEPPQGGHLELEDADVLGGLPEQHVDIGVPG 356 AGPR + G P A G P G L+ + GLP Q + G PG Sbjct: 300 AGPRGKEGRPGNA---GPPGFKGDRGLDGLGGIPGLPGQKGEAGYPG 343
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 28.9 bits (63), Expect = 9.9 Identities = 23/68 (33%), Positives = 29/68 (42%) Frame = +3 Query: 306 DVLGGLPEQHVDIGVPGVRDYLLELPQPPQHHVLEGPPVHQRCHHPLGLSHREGGLPSHL 485 DVLG EQH+ G PG+ L +P L+G PLG + S+ Sbjct: 1622 DVLGSEREQHLGCGTPGLEGSRTPLQRP----FLQG-------GLPLGNLPSSSPMDSYP 1670 Query: 486 SLCISPSL 509 LC SP L Sbjct: 1671 GLCQSPFL 1678
>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit 10| (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 925 Score = 28.9 bits (63), Expect = 9.9 Identities = 25/84 (29%), Positives = 29/84 (34%) Frame = +3 Query: 243 PSRAVDGGEPPQGGHLELEDADVLGGLPEQHVDIGVPGVRDYLLELPQPPQHHVLEGPPV 422 P GG GGH E G P H VPG R + P P +H +GP Sbjct: 816 PHEGPGGGMGAGGGHRPHEGPG--HGGPHGHRPHDVPGHRGHDHRGPPPHEHRGHDGPGH 873 Query: 423 HQRCHHPLGLSHREGGLPSHLSLC 494 H H GG S +C Sbjct: 874 GGGGHRGHDGGHNHGGDMSKRPVC 897
>GUAA_AQUAE (O66601) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 510 Score = 28.9 bits (63), Expect = 9.9 Identities = 21/71 (29%), Positives = 34/71 (47%) Frame = -2 Query: 488 REMRRKATFTVGKAKGVVASLMHRRPFQHMVLRRLRELKKIVPDARDADVDVLLRQTAEY 309 RE+ + +GK GV ++ R PF L +I+ + D+++L + A+Y Sbjct: 362 RELFKDEVRKIGKLLGVPEEILRRHPFPGPGL-----AIRIIGEVNKKDLEIL--RKADY 414 Query: 308 ICILELKVAAL 276 I I ELK L Sbjct: 415 IFIQELKKEGL 425 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,190,199 Number of Sequences: 219361 Number of extensions: 1611893 Number of successful extensions: 5531 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 5132 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5522 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
