ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK067305.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 7e-22
2gb|AY110608.1| Zea mays CL7462_1 mRNA sequence 105 2e-19
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
4dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
5dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
6emb|AL596172.1| Listeria innocua Clip11262 complete genome, segm... 48 0.035
7gb|AC099600.5| Mus musculus chromosome 15, clone RP23-236P20, co... 46 0.14
8gb|BC072038.1| Xenopus laevis hypothetical protein MGC82406, mRN... 42 2.2
9gb|BC072273.1| Xenopus laevis hypothetical protein MGC82406, mRN... 42 2.2
10ref|XM_717198.1| Candida albicans SC5314 putative 5'-3' exoribon... 42 2.2
11ref|XM_717197.1| Candida albicans SC5314 hypothetical protein (C... 42 2.2
12ref|XM_717086.1| Candida albicans SC5314 putative 5'-3' exoribon... 42 2.2
13ref|XM_717085.1| Candida albicans SC5314 hypothetical protein (C... 42 2.2
14emb|AL731860.8| Mouse DNA sequence from clone RP23-367H4 on chro... 42 2.2
15gb|AC104336.2| Homo sapiens chromosome 1 clone RP4-783C10, compl... 42 2.2
16gb|AC093561.2| Homo sapiens chromosome 1 clone RP11-401A10, comp... 42 2.2
17gb|L37404.1|VIBAINS Vibrio fischeri (clone pBS2.7) autoinducer s... 42 2.2
18ref|NM_127957.2| Arabidopsis thaliana kinase AT2G23950 mRNA, com... 40 8.6
19gb|AC161429.2| Homo sapiens chromosome 20 clone WI2-3415J14, com... 40 8.6
20gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.6
21gb|AC010840.9| Drosophila melanogaster clone BACH59K20, complete... 40 8.6
22emb|CR759953.10| Zebrafish DNA sequence from clone DKEY-68D15 in... 40 8.6
23emb|CR847832.18| Zebrafish DNA sequence from clone DKEY-30K23 in... 40 8.6
24gb|AC069564.34| Mus musculus strain C57BL/6J chromosome 17 clone... 40 8.6
25emb|AL499627.23| Human DNA sequence from clone RP13-379O24 on ch... 40 8.6
26ref|XM_504812.1| Yarrowia lipolytica CLIB122, YALI0F00286g predi... 40 8.6
27emb|AL031904.1|HS103M22 Human DNA sequence from clone RP1-103M22... 40 8.6
28gb|AC069524.18| Homo sapiens 3 BAC RP11-181C6 (Roswell Park Canc... 40 8.6
29gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell ... 40 8.6
30gb|AC104627.8| Drosophila melanogaster X BAC RP98-4A11 (Roswell ... 40 8.6
31gb|AC005170.3| Arabidopsis thaliana chromosome 2 clone T29E15 ma... 40 8.6
32gb|AC005342.1| Homo sapiens 12p13.3 PAC RPCI5-1096D14 (Roswell P... 40 8.6
33gb|AF283142.1|AF283142 HIV-1 isolate TZB0147 from Tanzania, enve... 40 8.6
34dbj|AK088032.1| Mus musculus 2 days neonate thymus thymic cells ... 40 8.6
35dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
36dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
37dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
38dbj|AP004145.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
39dbj|AP005741.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
40dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
41emb|AJ006492.1|HSA006492 Homo sapiens PCCB gene, exon 6 40 8.6
42gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 ... 40 8.6
43gb|AE003846.5| Drosophila melanogaster chromosome 4, section 5 o... 40 8.6
44emb|CT025550.11| Mouse DNA sequence from clone RP23-478C2 on chr... 40 8.6
45gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.6
46gb|AC113480.8| Mus musculus chromosome 13, clone RP23-309D8, com... 40 8.6
47emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 8.6 
>dbj|AK067305.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100P11, full
            insert sequence
          Length = 3130

 Score =  113 bits (57), Expect = 7e-22
 Identities = 164/200 (82%), Gaps = 6/200 (3%)
 Strand = Plus / Minus

                                                                        
Query: 351  gctgtgatgaccttgcaacagtgttcctttggatagcagcttgcattttcgcccggctgt 410
            |||| |||| |||||| | ||| |||||||| |||||||||| |||||| ||| | ||||
Sbjct: 2555 gctgagatgtccttgctatagtattcctttgaatagcagctttcatttttgcctgactgt 2496

                                                                        
Query: 411  caacctccatcctcgccttcttcaatatagggctcttgtagctggagttggataggctgc 470
             |||||||||||| || || || |  ||||||||||| ||||||||      |||| |||
Sbjct: 2495 taacctccatccttgcttttttaagaatagggctcttatagctgga------taggttgc 2442

                                                                        
Query: 471  tggatccacttcctccccagaaacttcttttgctgttcggtgggatcttcgtacaaactt 530
            ||| ||||||||||||  | ||||||||||||||| | ||||| | ||||||||||| ||
Sbjct: 2441 tgggtccacttcctccgaaaaaacttcttttgctgcttggtggcaccttcgtacaaattt 2382

                                
Query: 531  taatttgtttgctctgtttc 550
            |||||||||| || ||||||
Sbjct: 2381 taatttgtttactttgtttc 2362



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                    
Query: 254  ttcggaccagttggtttggtgatggttatggttgaattaggtcgatgaattgtcgt 309
            ||||||||||||||||| |||||||| ||||||||||| |||| |||||| |||||
Sbjct: 2652 ttcggaccagttggtttagtgatggtaatggttgaattgggtctatgaatagtcgt 2597
to top
>gb|AY110608.1| Zea mays CL7462_1 mRNA sequence
          Length = 1000

 Score =  105 bits (53), Expect = 2e-19
 Identities = 131/157 (83%)
 Strand = Plus / Minus

                                                                       
Query: 349 tggctgtgatgaccttgcaacagtgttcctttggatagcagcttgcattttcgcccggct 408
           |||||| |||||||| |||| ||| ||| |||| |||||||  |||| | | || || ||
Sbjct: 624 tggctgagatgacctcgcaaaagtattcttttgcatagcagactgcaatcttgctcgact 565

                                                                       
Query: 409 gtcaacctccatcctcgccttcttcaatatagggctcttgtagctggagttggataggct 468
           || |||||| ||||| |||||||||| |||||||||||||||||||||  ||||||  ||
Sbjct: 564 gttaacctctatcctagccttcttcagtatagggctcttgtagctggaactggatacact 505

                                                
Query: 469 gctggatccacttcctccccagaaacttcttttgctg 505
           ||| | ||||||||||||  ||||||| |||||||||
Sbjct: 504 gctaggtccacttcctccaaagaaactccttttgctg 468
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                       
Query: 254     ttcggaccagttggtttggtgatggttatggttgaattaggtcgatgaattgtcgt 309
               ||||||||||||||||| |||||||| ||||||||||| |||| |||||| |||||
Sbjct: 4062459 ttcggaccagttggtttagtgatggtaatggttgaattgggtctatgaatagtcgt 4062404



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                           
Query: 491     aaacttcttttgctgttcggtgggatcttcgtacaaactttaatttgtttgctctgtttc 550
               ||||||||||||||| | ||||| | ||||||||||| |||||||||||| || ||||||
Sbjct: 4061951 aaacttcttttgctgcttggtggcaccttcgtacaaattttaatttgtttactttgtttc 4061892



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 601     ttcaacttgcttttgctttt 620
               ||||||||||||||||||||
Sbjct: 2688553 ttcaacttgcttttgctttt 2688534
to top
>dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0462E11
          Length = 166115

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                      
Query: 254    ttcggaccagttggtttggtgatggttatggttgaattaggtcgatgaattgtcgt 309
              ||||||||||||||||| |||||||| ||||||||||| |||| |||||| |||||
Sbjct: 149756 ttcggaccagttggtttagtgatggtaatggttgaattgggtctatgaatagtcgt 149701



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                          
Query: 491    aaacttcttttgctgttcggtgggatcttcgtacaaactttaatttgtttgctctgtttc 550
              ||||||||||||||| | ||||| | ||||||||||| |||||||||||| || ||||||
Sbjct: 149248 aaacttcttttgctgcttggtggcaccttcgtacaaattttaatttgtttactttgtttc 149189
to top
>dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0458D06
          Length = 166038

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                     
Query: 254   ttcggaccagttggtttggtgatggttatggttgaattaggtcgatgaattgtcgt 309
             ||||||||||||||||| |||||||| ||||||||||| |||| |||||| |||||
Sbjct: 55572 ttcggaccagttggtttagtgatggtaatggttgaattgggtctatgaatagtcgt 55517



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                         
Query: 491   aaacttcttttgctgttcggtgggatcttcgtacaaactttaatttgtttgctctgtttc 550
             ||||||||||||||| | ||||| | ||||||||||| |||||||||||| || ||||||
Sbjct: 55064 aaacttcttttgctgcttggtggcaccttcgtacaaattttaatttgtttactttgtttc 55005
to top
>emb|AL596172.1| Listeria innocua Clip11262 complete genome, segment 10/12
          Length = 248050

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 423    tcgccttcttcaatatagggctct 446
              ||||||||||||||||||||||||
Sbjct: 194559 tcgccttcttcaatatagggctct 194582
to top
>gb|AC099600.5| Mus musculus chromosome 15, clone RP23-236P20, complete sequence
          Length = 146442

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 607    ttgcttttgcttttctgtttttg 629
              |||||||||||||||||||||||
Sbjct: 123953 ttgcttttgcttttctgtttttg 123931
to top
>gb|BC072038.1| Xenopus laevis hypothetical protein MGC82406, mRNA (cDNA clone
            MGC:78886 IMAGE:4174082), complete cds
          Length = 3183

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 452  ctggagttggataggctgctg 472
            |||||||||||||||||||||
Sbjct: 2269 ctggagttggataggctgctg 2289
to top
>gb|BC072273.1| Xenopus laevis hypothetical protein MGC82406, mRNA (cDNA clone
            MGC:82406 IMAGE:4632623), complete cds
          Length = 3187

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 452  ctggagttggataggctgctg 472
            |||||||||||||||||||||
Sbjct: 2288 ctggagttggataggctgctg 2308
to top
>ref|XM_717198.1| Candida albicans SC5314 putative 5'-3' exoribonuclease (CaO19_12434),
            mRNA
          Length = 4410

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 598  ttgttcaacttgcttttgctt 618
            |||||||||||||||||||||
Sbjct: 3774 ttgttcaacttgcttttgctt 3754
to top
>ref|XM_717197.1| Candida albicans SC5314 hypothetical protein (CaO19_12433), mRNA
          Length = 438

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 598 ttgttcaacttgcttttgctt 618
           |||||||||||||||||||||
Sbjct: 310 ttgttcaacttgcttttgctt 330
to top
>ref|XM_717086.1| Candida albicans SC5314 putative 5'-3' exoribonuclease (CaO19_4969),
            mRNA
          Length = 4269

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 598  ttgttcaacttgcttttgctt 618
            |||||||||||||||||||||
Sbjct: 3636 ttgttcaacttgcttttgctt 3616
to top
>ref|XM_717085.1| Candida albicans SC5314 hypothetical protein (CaO19_4968), mRNA
          Length = 438

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 598 ttgttcaacttgcttttgctt 618
           |||||||||||||||||||||
Sbjct: 310 ttgttcaacttgcttttgctt 330
to top
>emb|AL731860.8| Mouse DNA sequence from clone RP23-367H4 on chromosome 11 Contains the
             5' end of the AF424697 gene for DNA sequence AF424697
             (FLJ21950, KIAA0903-like) and a CpG island, complete
             sequence
          Length = 119258

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 591   acattctttgttcaacttgcttttg 615
             ||||||||||||||| |||||||||
Sbjct: 97897 acattctttgttcaagttgcttttg 97873
to top
>gb|AC104336.2| Homo sapiens chromosome 1 clone RP4-783C10, complete sequence
          Length = 134161

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 477  cacttcctccccagaaacttc 497
            |||||||||||||||||||||
Sbjct: 9078 cacttcctccccagaaacttc 9098
to top
>gb|AC093561.2| Homo sapiens chromosome 1 clone RP11-401A10, complete sequence
          Length = 184330

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 606    cttgcttttgcttttctgttt 626
              |||||||||||||||||||||
Sbjct: 114086 cttgcttttgcttttctgttt 114066
to top
>gb|L37404.1|VIBAINS Vibrio fischeri (clone pBS2.7) autoinducer synthase (ainS) gene,
            complete cds and sensor kinase (ainR) gene, 5' end
          Length = 2126

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 607  ttgcttttgcttttctgtttt 627
            |||||||||||||||||||||
Sbjct: 1871 ttgcttttgcttttctgtttt 1891
to top
>ref|NM_127957.2| Arabidopsis thaliana kinase AT2G23950 mRNA, complete cds
          Length = 2334

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 607 ttgcttttgcttttctgttt 626
           ||||||||||||||||||||
Sbjct: 208 ttgcttttgcttttctgttt 227
to top
>gb|AC161429.2| Homo sapiens chromosome 20 clone WI2-3415J14, complete sequence
          Length = 41419

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  acagccttgctggctgtgat 358
            ||||||||||||||||||||
Sbjct: 2904 acagccttgctggctgtgat 2923
to top
>gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0039A07 map near 50283S, complete sequence
          Length = 158158

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 601   ttcaacttgcttttgctttt 620
             ||||||||||||||||||||
Sbjct: 48179 ttcaacttgcttttgctttt 48160
to top
>gb|AC010840.9| Drosophila melanogaster clone BACH59K20, complete sequence
          Length = 29510

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 610   cttttgcttttctgtttttg 629
             ||||||||||||||||||||
Sbjct: 20204 cttttgcttttctgtttttg 20185
to top
>emb|CR759953.10| Zebrafish DNA sequence from clone DKEY-68D15 in linkage group 7,
             complete sequence
          Length = 162332

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 522   tacaaactttaatttgtttg 541
             ||||||||||||||||||||
Sbjct: 87317 tacaaactttaatttgtttg 87336
to top
>emb|CR847832.18| Zebrafish DNA sequence from clone DKEY-30K23 in linkage group 8,
             complete sequence
          Length = 135277

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 522   tacaaactttaatttgtttg 541
             ||||||||||||||||||||
Sbjct: 11966 tacaaactttaatttgtttg 11985
to top
>gb|AC069564.34| Mus musculus strain C57BL/6J chromosome 17 clone rp23-435n13, complete
              sequence
          Length = 185784

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 263    gttggtttggtgatggttatggtt 286
              ||||||||||||||||| ||||||
Sbjct: 144970 gttggtttggtgatggtcatggtt 144947
to top
>emb|AL499627.23| Human DNA sequence from clone RP13-379O24 on chromosome 20 Contains the
             GATA5 gene for GATA binding protein 5 and two CpG islands,
             complete sequence
          Length = 59999

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   acagccttgctggctgtgat 358
             ||||||||||||||||||||
Sbjct: 52567 acagccttgctggctgtgat 52586
to top
>ref|XM_504812.1| Yarrowia lipolytica CLIB122, YALI0F00286g predicted mRNA
          Length = 4329

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 415  ctccatcctcgccttcttca 434
            ||||||||||||||||||||
Sbjct: 1015 ctccatcctcgccttcttca 996
to top
>emb|AL031904.1|HS103M22 Human DNA sequence from clone RP1-103M22 on chromosome 6p24 Contains a
             CpG island, complete sequence
          Length = 140709

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 609   gcttttgcttttctgttttt 628
             ||||||||||||||||||||
Sbjct: 85573 gcttttgcttttctgttttt 85554
to top
>gb|AC069524.18| Homo sapiens 3 BAC RP11-181C6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 161806

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 608    tgcttttgcttttctgtttt 627
              ||||||||||||||||||||
Sbjct: 121537 tgcttttgcttttctgtttt 121518
to top
>gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 160440

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 607    ttgcttttgcttttctgtttttgc 630
              ||||||||| ||||||||||||||
Sbjct: 102412 ttgcttttgtttttctgtttttgc 102435
to top
>gb|AC104627.8| Drosophila melanogaster X BAC RP98-4A11 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 187921

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 607   ttgcttttgcttttctgtttttgc 630
             ||||||||| ||||||||||||||
Sbjct: 37606 ttgcttttgtttttctgtttttgc 37629
to top
>gb|AC005170.3| Arabidopsis thaliana chromosome 2 clone T29E15 map CIC06C07, complete
             sequence
          Length = 108056

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 607   ttgcttttgcttttctgttt 626
             ||||||||||||||||||||
Sbjct: 53170 ttgcttttgcttttctgttt 53151
to top
>gb|AC005342.1| Homo sapiens 12p13.3 PAC RPCI5-1096D14 (Roswell Park Cancer Institute
             Human PAC Library) complete sequence
          Length = 220257

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    tgtgctcagctggggcaact 77
             ||||||||||||||||||||
Sbjct: 58066 tgtgctcagctggggcaact 58047
to top
>gb|AF283142.1|AF283142 HIV-1 isolate TZB0147 from Tanzania, envelope glycoprotein, C2-C4
           region (env) gene, partial cds
          Length = 663

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 gtgatggttatggttgaatt 291
           ||||||||||||||||||||
Sbjct: 419 gtgatggttatggttgaatt 400
to top
>dbj|AK088032.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430002J10
           product:similar to RIBONUCLEASE H1 (EC 3.1.26.4) (RNASE
           H1) [Mus musculus], full insert sequence
          Length = 1966

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 607 ttgcttttgcttttctgtttttgc 630
           |||||||||||||| |||||||||
Sbjct: 71  ttgcttttgcttttttgtttttgc 94
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 601      ttcaacttgcttttgctttt 620
                ||||||||||||||||||||
Sbjct: 14302567 ttcaacttgcttttgctttt 14302548
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 601     ttcaacttgcttttgctttt 620
               ||||||||||||||||||||
Sbjct: 1419660 ttcaacttgcttttgctttt 1419679
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 601      ttcaacttgcttttgctttt 620
                ||||||||||||||||||||
Sbjct: 27465705 ttcaacttgcttttgctttt 27465686
to top
>dbj|AP004145.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0047F09
          Length = 79652

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 601   ttcaacttgcttttgctttt 620
             ||||||||||||||||||||
Sbjct: 55594 ttcaacttgcttttgctttt 55575
to top
>dbj|AP005741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470H09
          Length = 141257

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 601   ttcaacttgcttttgctttt 620
             ||||||||||||||||||||
Sbjct: 66834 ttcaacttgcttttgctttt 66815
to top
>dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1512_E04
          Length = 157848

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 601   ttcaacttgcttttgctttt 620
             ||||||||||||||||||||
Sbjct: 37773 ttcaacttgcttttgctttt 37792
to top
>emb|AJ006492.1|HSA006492 Homo sapiens PCCB gene, exon 6
          Length = 269

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 608 tgcttttgcttttctgtttt 627
           ||||||||||||||||||||
Sbjct: 43  tgcttttgcttttctgtttt 62
to top
>gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 of 74 of the complete
              sequence
          Length = 302665

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 607    ttgcttttgcttttctgtttttgc 630
              ||||||||| ||||||||||||||
Sbjct: 119533 ttgcttttgtttttctgtttttgc 119556
to top
>gb|AE003846.5| Drosophila melanogaster chromosome 4, section 5 of 5 of the complete
              sequence
          Length = 356494

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 610    cttttgcttttctgtttttg 629
              ||||||||||||||||||||
Sbjct: 347188 cttttgcttttctgtttttg 347169
to top
>emb|CT025550.11| Mouse DNA sequence from clone RP23-478C2 on chromosome 17, complete
             sequence
          Length = 187385

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 263   gttggtttggtgatggttatggtt 286
             ||||||||||||||||| ||||||
Sbjct: 45609 gttggtttggtgatggtcatggtt 45586
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 601      ttcaacttgcttttgctttt 620
                ||||||||||||||||||||
Sbjct: 14384569 ttcaacttgcttttgctttt 14384550
to top
>gb|AC113480.8| Mus musculus chromosome 13, clone RP23-309D8, complete sequence
          Length = 181457

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 605   acttgcttttgcttttctgttttt 628
             ||||||||||| ||||||||||||
Sbjct: 27844 acttgcttttgtttttctgttttt 27821
to top
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia
             lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   ctccatcctcgccttcttca 434
             ||||||||||||||||||||
Sbjct: 31845 ctccatcctcgccttcttca 31826


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,922,130
Number of Sequences: 3902068
Number of extensions: 5922130
Number of successful extensions: 125487
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125178
Number of HSP's gapped (non-prelim): 309
length of query: 632
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 609
effective length of database: 17,143,297,704
effective search space: 10440268301736
effective search space used: 10440268301736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top