ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, ... 42 0.62
2gb|BC070849.1| Xenopus laevis hypothetical protein MGC84587, mRN... 40 2.4
3gb|AC119954.12| Mus musculus chromosome 1, clone RP24-450P2, com... 40 2.4
4gb|AY355786.1| Canis familiaris isolate cOR8S6P olfactory recept... 40 2.4
5gb|AC160529.6| Mus musculus chromosome 1, clone RP24-141F19, com... 40 2.4
6ref|XM_846324.1| PREDICTED: Canis familiaris olfactory receptor ... 40 2.4
7gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, co... 40 2.4
8gb|BC091056.1| Xenopus tropicalis MGC108315 protein, mRNA (cDNA ... 40 2.4
9gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 2.4
10ref|NM_001030433.1| Xenopus tropicalis MGC108315 protein (MGC108... 40 2.4
11gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete se... 40 2.4
12gb|AF461354.1| Drosophila ercepeae hunchback (hb) gene, partial cds 40 2.4
13ref|NG_004965.1| Canis familiaris cOR8S6P olfactory receptor fam... 40 2.4
14gb|BC084329.1| Xenopus laevis hypothetical LOC495134, mRNA (cDNA... 40 2.4
15gb|AY753023.1| Penaeus monodon clone t2801 microsatellite sequence 38 9.6
16gb|AC115896.9| Mus musculus chromosome 1, clone RP24-443M8, comp... 38 9.6
17ref|XM_750822.1| Aspergillus fumigatus Af293 hypothetical protei... 38 9.6
18emb|AL163249.2|HS21C049 Homo sapiens chromosome 21 segment HS21C049 38 9.6
19emb|AL359831.9| Human DNA sequence from clone RP11-251L4 on chro... 38 9.6
20gb|AF129075.3| Homo sapiens chromosome 21 clone RP1-100J12, Rp1-... 38 9.6
21gb|AF170802.6| Homo sapiens chromosome 8 clone GS1-13p3 map cen,... 38 9.6
22emb|AL080312.14|HSJ1025A1 Human DNA sequence from clone RP5-1025... 38 9.6
23ref|NM_001017227.2| Xenopus tropicalis paired-like homeodomain t... 38 9.6
24emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4,... 38 9.6
25gb|AC154393.8| Mus musculus chromosome 1, clone RP23-64O1, compl... 38 9.6
26gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 38 9.6
27dbj|AK125058.1| Homo sapiens cDNA FLJ43068 fis, clone BRTHA30087... 38 9.6
28gb|AC011197.12| Homo sapiens chromosome 10 clone RP11-322C8, com... 38 9.6
29gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 38 9.6
30dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.6
31gb|AC107885.5| Homo sapiens chromosome 8, clone CTD-2552G2, comp... 38 9.6
32gb|AC138229.16| Mus musculus chromosome 1, clone RP23-399N18, co... 38 9.6
33dbj|BS000171.1| Pan troglodytes chromosome 22 clone:PTB-086M04, ... 38 9.6
34dbj|BS000157.1| Pan troglodytes chromosome 22 clone:RP43-154K22,... 38 9.6
35emb|CR760278.2| Xenopus tropicalis finished cDNA, clone TNeu083k20 38 9.6
36dbj|AP000870.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 9.6
37gb|AC101944.16| Mus musculus chromosome 1, clone RP24-118B6, com... 38 9.6 
>gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-348F2, Complete
             Sequence, complete sequence
          Length = 194881

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 46    atcaccagcagcatcatcaccagnacag 73
             |||||||||| |||||||||||| ||||
Sbjct: 68414 atcaccagcatcatcatcaccagcacag 68441



 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 46    atcaccagcagcatcatcaccag 68
             |||||||||| ||||||||||||
Sbjct: 68399 atcaccagcatcatcatcaccag 68421
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>gb|BC070849.1| Xenopus laevis hypothetical protein MGC84587, mRNA (cDNA clone
           MGC:84587 IMAGE:6639941), complete cds
          Length = 2043

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 124 cagaggcatgcaaagacgtccagg 147
           ||||||||||||||||| ||||||
Sbjct: 280 cagaggcatgcaaagacttccagg 303
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>gb|AC119954.12| Mus musculus chromosome 1, clone RP24-450P2, complete sequence
          Length = 179212

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    caccagcagcatcatcacca 67
             ||||||||||||||||||||
Sbjct: 71603 caccagcagcatcatcacca 71622
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>gb|AY355786.1| Canis familiaris isolate cOR8S6P olfactory receptor family 8
           subfamily S pseudogene, partial sequence
          Length = 852

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  gatcaccagcagcatcatca 64
           ||||||||||||||||||||
Sbjct: 115 gatcaccagcagcatcatca 96
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>gb|AC160529.6| Mus musculus chromosome 1, clone RP24-141F19, complete sequence
          Length = 167687

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     caccagcagcatcatcacca 67
              ||||||||||||||||||||
Sbjct: 161420 caccagcagcatcatcacca 161401
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>ref|XM_846324.1| PREDICTED: Canis familiaris olfactory receptor family 8 subfamily S
           (cOR8S16), mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  gatcaccagcagcatcatca 64
           ||||||||||||||||||||
Sbjct: 381 gatcaccagcagcatcatca 362
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>gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, complete sequence
          Length = 175569

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   actaagattttatttgcttc 120
             ||||||||||||||||||||
Sbjct: 69891 actaagattttatttgcttc 69910
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>gb|BC091056.1| Xenopus tropicalis MGC108315 protein, mRNA (cDNA clone MGC:108315
           IMAGE:7022023), complete cds
          Length = 2276

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 124 cagaggcatgcaaagacgtccagg 147
           ||||||||||||||||| ||||||
Sbjct: 214 cagaggcatgcaaagacttccagg 237
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 49      accagcagcatcatcaccag 68
               ||||||||||||||||||||
Sbjct: 2994317 accagcagcatcatcaccag 2994298
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>ref|NM_001030433.1| Xenopus tropicalis MGC108315 protein (MGC108315), mRNA
          Length = 2276

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 124 cagaggcatgcaaagacgtccagg 147
           ||||||||||||||||| ||||||
Sbjct: 214 cagaggcatgcaaagacttccagg 237
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>gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete sequence
          Length = 210140

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 124    cagaggcatgcaaagacgtccagg 147
              ||||||||||||||||| ||||||
Sbjct: 195142 cagaggcatgcaaagacttccagg 195119
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>gb|AF461354.1| Drosophila ercepeae hunchback (hb) gene, partial cds
          Length = 483

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  caccagcagcatcatcacca 67
           ||||||||||||||||||||
Sbjct: 85  caccagcagcatcatcacca 104
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>ref|NG_004965.1| Canis familiaris cOR8S6P olfactory receptor family 8 subfamily S
           pseudogene (cOR8S6P) on chromosome 27
          Length = 852

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  gatcaccagcagcatcatca 64
           ||||||||||||||||||||
Sbjct: 115 gatcaccagcagcatcatca 96
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>gb|BC084329.1| Xenopus laevis hypothetical LOC495134, mRNA (cDNA clone MGC:83943
           IMAGE:6861944), complete cds
          Length = 1920

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 124 cagaggcatgcaaagacgtccagg 147
           ||||||||||||||||| ||||||
Sbjct: 241 cagaggcatgcaaagacttccagg 264
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>gb|AY753023.1| Penaeus monodon clone t2801 microsatellite sequence
          Length = 651

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 46  atcaccagcagcatcatca 64
           |||||||||||||||||||
Sbjct: 294 atcaccagcagcatcatca 312
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>gb|AC115896.9| Mus musculus chromosome 1, clone RP24-443M8, complete sequence
          Length = 203303

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 46     atcaccagcagcatcatcaccag 68
              ||||||||||||| |||||||||
Sbjct: 186750 atcaccagcagcaccatcaccag 186772
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>ref|XM_750822.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g15800)
          partial mRNA
          Length = 576

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 46 atcaccagcagcatcatcaccag 68
          |||||||||||||||| ||||||
Sbjct: 23 atcaccagcagcatcaccaccag 45
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>emb|AL163249.2|HS21C049 Homo sapiens chromosome 21 segment HS21C049
          Length = 340000

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                        
Query: 50     ccagcagcatcatcaccagnacagac 75
              |||||||||||| |||||| ||||||
Sbjct: 120030 ccagcagcatcagcaccagcacagac 120055
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>emb|AL359831.9| Human DNA sequence from clone RP11-251L4 on chromosome 13, complete
             sequence
          Length = 65321

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 103   taagattttatttgcttca 121
             |||||||||||||||||||
Sbjct: 43955 taagattttatttgcttca 43937
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>gb|AF129075.3| Homo sapiens chromosome 21 clone RP1-100J12, Rp1-P79E4 map q21.3-22.11,
              complete sequence
          Length = 190837

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                        
Query: 50     ccagcagcatcatcaccagnacagac 75
              |||||||||||| |||||| ||||||
Sbjct: 119871 ccagcagcatcagcaccagcacagac 119896
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>gb|AF170802.6| Homo sapiens chromosome 8 clone GS1-13p3 map cen, complete sequence
          Length = 89408

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 94    ctgaagaactaagatttta 112
             |||||||||||||||||||
Sbjct: 66799 ctgaagaactaagatttta 66817
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>emb|AL080312.14|HSJ1025A1 Human DNA sequence from clone RP5-1025A1 on chromosome 20p11.21-11.23
            Contains the 5' part of the ACAS2L gene for
            acetyl-Coenzyme A synthetase (AMP forming)-like, the VSX1
            gene for visual system homeobox 1 (zebrafish) homolog
            (CHX10-like), variants L1 and S1 and four CpG islands,
            complete sequence
          Length = 94664

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 7    agaaacaacaggtcccaga 25
            |||||||||||||||||||
Sbjct: 4192 agaaacaacaggtcccaga 4210
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>ref|NM_001017227.2| Xenopus tropicalis paired-like homeodomain transcription factor 2
           (pitx2), mRNA
          Length = 2385

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 46  atcaccagcagcatcatcaccag 68
           ||||||||||||| |||||||||
Sbjct: 584 atcaccagcagcaccatcaccag 606
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>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24,
             complete sequence
          Length = 146168

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 94    ctgaagaactaagatttta 112
             |||||||||||||||||||
Sbjct: 29117 ctgaagaactaagatttta 29135
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>gb|AC154393.8| Mus musculus chromosome 1, clone RP23-64O1, complete sequence
          Length = 253733

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 103 taagattttatttgcttca 121
           |||||||||||||||||||
Sbjct: 978 taagattttatttgcttca 996
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 43      aggatcaccagcagcatca 61
               |||||||||||||||||||
Sbjct: 1767736 aggatcaccagcagcatca 1767754
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>dbj|AK125058.1| Homo sapiens cDNA FLJ43068 fis, clone BRTHA3008778, moderately
           similar to Acetyl-coenzyme A synthetase (EC 6.2.1.1)
          Length = 4877

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 7   agaaacaacaggtcccaga 25
           |||||||||||||||||||
Sbjct: 810 agaaacaacaggtcccaga 792
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>gb|AC011197.12| Homo sapiens chromosome 10 clone RP11-322C8, complete sequence
          Length = 162784

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 97    aagaactaagattttattt 115
             |||||||||||||||||||
Sbjct: 87113 aagaactaagattttattt 87131
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 43      aggatcaccagcagcatca 61
               |||||||||||||||||||
Sbjct: 1091941 aggatcaccagcagcatca 1091923
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 94       ctgaagaactaagatttta 112
                |||||||||||||||||||
Sbjct: 33978220 ctgaagaactaagatttta 33978238
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>gb|AC107885.5| Homo sapiens chromosome 8, clone CTD-2552G2, complete sequence
          Length = 163298

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 94     ctgaagaactaagatttta 112
              |||||||||||||||||||
Sbjct: 103537 ctgaagaactaagatttta 103555
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>gb|AC138229.16| Mus musculus chromosome 1, clone RP23-399N18, complete sequence
          Length = 211732

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 46     atcaccagcagcatcatcaccag 68
              ||||||||||||| |||||||||
Sbjct: 195723 atcaccagcagcaccatcaccag 195701
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>dbj|BS000171.1| Pan troglodytes chromosome 22 clone:PTB-086M04, map 22, complete
             sequences
          Length = 218680

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                       
Query: 50    ccagcagcatcatcaccagnacagac 75
             |||||||||||| |||||| ||||||
Sbjct: 23209 ccagcagcatcagcaccagcacagac 23234
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>dbj|BS000157.1| Pan troglodytes chromosome 22 clone:RP43-154K22, map 22, complete
             sequences
          Length = 192836

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                       
Query: 50    ccagcagcatcatcaccagnacagac 75
             |||||||||||| |||||| ||||||
Sbjct: 31900 ccagcagcatcagcaccagcacagac 31925
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>emb|CR760278.2| Xenopus tropicalis finished cDNA, clone TNeu083k20
          Length = 2385

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 46  atcaccagcagcatcatcaccag 68
           ||||||||||||| |||||||||
Sbjct: 584 atcaccagcagcaccatcaccag 606
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>dbj|AP000870.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-697H10, complete
             sequence
          Length = 179339

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 106   gattttatttgcttcanacaga 127
             |||||||||||||||| |||||
Sbjct: 44763 gattttatttgcttcatacaga 44742
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>gb|AC101944.16| Mus musculus chromosome 1, clone RP24-118B6, complete sequence
          Length = 174560

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 103    taagattttatttgcttca 121
              |||||||||||||||||||
Sbjct: 135063 taagattttatttgcttca 135081


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,619,808
Number of Sequences: 3902068
Number of extensions: 1619808
Number of successful extensions: 146412
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146157
Number of HSP's gapped (non-prelim): 255
length of query: 194
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 172
effective length of database: 17,147,199,772
effective search space: 2949318360784
effective search space used: 2949318360784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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