Clone Name | rbasd16f07 |
---|---|
Clone Library Name | barley_pub |
>gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-348F2, Complete Sequence, complete sequence Length = 194881 Score = 42.1 bits (21), Expect = 0.62 Identities = 26/28 (92%) Strand = Plus / Plus Query: 46 atcaccagcagcatcatcaccagnacag 73 |||||||||| |||||||||||| |||| Sbjct: 68414 atcaccagcatcatcatcaccagcacag 68441 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 46 atcaccagcagcatcatcaccag 68 |||||||||| |||||||||||| Sbjct: 68399 atcaccagcatcatcatcaccag 68421
>gb|BC070849.1| Xenopus laevis hypothetical protein MGC84587, mRNA (cDNA clone MGC:84587 IMAGE:6639941), complete cds Length = 2043 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 cagaggcatgcaaagacgtccagg 147 ||||||||||||||||| |||||| Sbjct: 280 cagaggcatgcaaagacttccagg 303
>gb|AC119954.12| Mus musculus chromosome 1, clone RP24-450P2, complete sequence Length = 179212 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 caccagcagcatcatcacca 67 |||||||||||||||||||| Sbjct: 71603 caccagcagcatcatcacca 71622
>gb|AY355786.1| Canis familiaris isolate cOR8S6P olfactory receptor family 8 subfamily S pseudogene, partial sequence Length = 852 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gatcaccagcagcatcatca 64 |||||||||||||||||||| Sbjct: 115 gatcaccagcagcatcatca 96
>gb|AC160529.6| Mus musculus chromosome 1, clone RP24-141F19, complete sequence Length = 167687 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 caccagcagcatcatcacca 67 |||||||||||||||||||| Sbjct: 161420 caccagcagcatcatcacca 161401
>ref|XM_846324.1| PREDICTED: Canis familiaris olfactory receptor family 8 subfamily S (cOR8S16), mRNA Length = 1167 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gatcaccagcagcatcatca 64 |||||||||||||||||||| Sbjct: 381 gatcaccagcagcatcatca 362
>gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, complete sequence Length = 175569 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 actaagattttatttgcttc 120 |||||||||||||||||||| Sbjct: 69891 actaagattttatttgcttc 69910
>gb|BC091056.1| Xenopus tropicalis MGC108315 protein, mRNA (cDNA clone MGC:108315 IMAGE:7022023), complete cds Length = 2276 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 cagaggcatgcaaagacgtccagg 147 ||||||||||||||||| |||||| Sbjct: 214 cagaggcatgcaaagacttccagg 237
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 accagcagcatcatcaccag 68 |||||||||||||||||||| Sbjct: 2994317 accagcagcatcatcaccag 2994298
>ref|NM_001030433.1| Xenopus tropicalis MGC108315 protein (MGC108315), mRNA Length = 2276 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 cagaggcatgcaaagacgtccagg 147 ||||||||||||||||| |||||| Sbjct: 214 cagaggcatgcaaagacttccagg 237
>gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete sequence Length = 210140 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 cagaggcatgcaaagacgtccagg 147 ||||||||||||||||| |||||| Sbjct: 195142 cagaggcatgcaaagacttccagg 195119
>gb|AF461354.1| Drosophila ercepeae hunchback (hb) gene, partial cds Length = 483 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 caccagcagcatcatcacca 67 |||||||||||||||||||| Sbjct: 85 caccagcagcatcatcacca 104
>ref|NG_004965.1| Canis familiaris cOR8S6P olfactory receptor family 8 subfamily S pseudogene (cOR8S6P) on chromosome 27 Length = 852 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gatcaccagcagcatcatca 64 |||||||||||||||||||| Sbjct: 115 gatcaccagcagcatcatca 96
>gb|BC084329.1| Xenopus laevis hypothetical LOC495134, mRNA (cDNA clone MGC:83943 IMAGE:6861944), complete cds Length = 1920 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 cagaggcatgcaaagacgtccagg 147 ||||||||||||||||| |||||| Sbjct: 241 cagaggcatgcaaagacttccagg 264
>gb|AY753023.1| Penaeus monodon clone t2801 microsatellite sequence Length = 651 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 atcaccagcagcatcatca 64 ||||||||||||||||||| Sbjct: 294 atcaccagcagcatcatca 312
>gb|AC115896.9| Mus musculus chromosome 1, clone RP24-443M8, complete sequence Length = 203303 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 46 atcaccagcagcatcatcaccag 68 ||||||||||||| ||||||||| Sbjct: 186750 atcaccagcagcaccatcaccag 186772
>ref|XM_750822.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g15800) partial mRNA Length = 576 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 46 atcaccagcagcatcatcaccag 68 |||||||||||||||| |||||| Sbjct: 23 atcaccagcagcatcaccaccag 45
>emb|AL163249.2|HS21C049 Homo sapiens chromosome 21 segment HS21C049 Length = 340000 Score = 38.2 bits (19), Expect = 9.6 Identities = 24/26 (92%) Strand = Plus / Plus Query: 50 ccagcagcatcatcaccagnacagac 75 |||||||||||| |||||| |||||| Sbjct: 120030 ccagcagcatcagcaccagcacagac 120055
>emb|AL359831.9| Human DNA sequence from clone RP11-251L4 on chromosome 13, complete sequence Length = 65321 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 103 taagattttatttgcttca 121 ||||||||||||||||||| Sbjct: 43955 taagattttatttgcttca 43937
>gb|AF129075.3| Homo sapiens chromosome 21 clone RP1-100J12, Rp1-P79E4 map q21.3-22.11, complete sequence Length = 190837 Score = 38.2 bits (19), Expect = 9.6 Identities = 24/26 (92%) Strand = Plus / Plus Query: 50 ccagcagcatcatcaccagnacagac 75 |||||||||||| |||||| |||||| Sbjct: 119871 ccagcagcatcagcaccagcacagac 119896
>gb|AF170802.6| Homo sapiens chromosome 8 clone GS1-13p3 map cen, complete sequence Length = 89408 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 94 ctgaagaactaagatttta 112 ||||||||||||||||||| Sbjct: 66799 ctgaagaactaagatttta 66817
>emb|AL080312.14|HSJ1025A1 Human DNA sequence from clone RP5-1025A1 on chromosome 20p11.21-11.23 Contains the 5' part of the ACAS2L gene for acetyl-Coenzyme A synthetase (AMP forming)-like, the VSX1 gene for visual system homeobox 1 (zebrafish) homolog (CHX10-like), variants L1 and S1 and four CpG islands, complete sequence Length = 94664 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 agaaacaacaggtcccaga 25 ||||||||||||||||||| Sbjct: 4192 agaaacaacaggtcccaga 4210
>ref|NM_001017227.2| Xenopus tropicalis paired-like homeodomain transcription factor 2 (pitx2), mRNA Length = 2385 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 46 atcaccagcagcatcatcaccag 68 ||||||||||||| ||||||||| Sbjct: 584 atcaccagcagcaccatcaccag 606
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 94 ctgaagaactaagatttta 112 ||||||||||||||||||| Sbjct: 29117 ctgaagaactaagatttta 29135
>gb|AC154393.8| Mus musculus chromosome 1, clone RP23-64O1, complete sequence Length = 253733 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 103 taagattttatttgcttca 121 ||||||||||||||||||| Sbjct: 978 taagattttatttgcttca 996
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 aggatcaccagcagcatca 61 ||||||||||||||||||| Sbjct: 1767736 aggatcaccagcagcatca 1767754
>dbj|AK125058.1| Homo sapiens cDNA FLJ43068 fis, clone BRTHA3008778, moderately similar to Acetyl-coenzyme A synthetase (EC 6.2.1.1) Length = 4877 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 agaaacaacaggtcccaga 25 ||||||||||||||||||| Sbjct: 810 agaaacaacaggtcccaga 792
>gb|AC011197.12| Homo sapiens chromosome 10 clone RP11-322C8, complete sequence Length = 162784 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 aagaactaagattttattt 115 ||||||||||||||||||| Sbjct: 87113 aagaactaagattttattt 87131
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 aggatcaccagcagcatca 61 ||||||||||||||||||| Sbjct: 1091941 aggatcaccagcagcatca 1091923
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 94 ctgaagaactaagatttta 112 ||||||||||||||||||| Sbjct: 33978220 ctgaagaactaagatttta 33978238
>gb|AC107885.5| Homo sapiens chromosome 8, clone CTD-2552G2, complete sequence Length = 163298 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 94 ctgaagaactaagatttta 112 ||||||||||||||||||| Sbjct: 103537 ctgaagaactaagatttta 103555
>gb|AC138229.16| Mus musculus chromosome 1, clone RP23-399N18, complete sequence Length = 211732 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 atcaccagcagcatcatcaccag 68 ||||||||||||| ||||||||| Sbjct: 195723 atcaccagcagcaccatcaccag 195701
>dbj|BS000171.1| Pan troglodytes chromosome 22 clone:PTB-086M04, map 22, complete sequences Length = 218680 Score = 38.2 bits (19), Expect = 9.6 Identities = 24/26 (92%) Strand = Plus / Plus Query: 50 ccagcagcatcatcaccagnacagac 75 |||||||||||| |||||| |||||| Sbjct: 23209 ccagcagcatcagcaccagcacagac 23234
>dbj|BS000157.1| Pan troglodytes chromosome 22 clone:RP43-154K22, map 22, complete sequences Length = 192836 Score = 38.2 bits (19), Expect = 9.6 Identities = 24/26 (92%) Strand = Plus / Plus Query: 50 ccagcagcatcatcaccagnacagac 75 |||||||||||| |||||| |||||| Sbjct: 31900 ccagcagcatcagcaccagcacagac 31925
>emb|CR760278.2| Xenopus tropicalis finished cDNA, clone TNeu083k20 Length = 2385 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 46 atcaccagcagcatcatcaccag 68 ||||||||||||| ||||||||| Sbjct: 584 atcaccagcagcaccatcaccag 606
>dbj|AP000870.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-697H10, complete sequence Length = 179339 Score = 38.2 bits (19), Expect = 9.6 Identities = 21/22 (95%) Strand = Plus / Minus Query: 106 gattttatttgcttcanacaga 127 |||||||||||||||| ||||| Sbjct: 44763 gattttatttgcttcatacaga 44742
>gb|AC101944.16| Mus musculus chromosome 1, clone RP24-118B6, complete sequence Length = 174560 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 103 taagattttatttgcttca 121 ||||||||||||||||||| Sbjct: 135063 taagattttatttgcttca 135081 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,619,808 Number of Sequences: 3902068 Number of extensions: 1619808 Number of successful extensions: 146412 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 146157 Number of HSP's gapped (non-prelim): 255 length of query: 194 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 172 effective length of database: 17,147,199,772 effective search space: 2949318360784 effective search space used: 2949318360784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)