ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16f04 |
|---|---|
| Clone Library Name | barley_pub |
>PRP16_HUMAN (Q92620) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16| (EC 3.6.1.-) (ATP-dependent RNA helicase DHX38) (DEAH box protein 38) Length = 1227 Score = 143 bits (361), Expect(2) = 5e-36 Identities = 69/143 (48%), Positives = 90/143 (62%) Frame = -2 Query: 655 HNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDP 476 H +A+LKGIGEYVN R GMPCHLHP+S+L+G+GYTPDY+VYHELV+TTKEYMQCV+AVD Sbjct: 1079 HQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDG 1138 Query: 475 QWLAELGPMFFSVKDTDTSLLDHKKRQXXXXXXXXXXXXKLRQEQXXXXXXXXXXXXXXX 296 +WLAELGPMF+SVK S ++++R L +EQ Sbjct: 1139 EWLAELGPMFYSVKQAGKSRQENRRR-AKEEASAMEEEMALAEEQLRARRQEQEKRSPLG 1197 Query: 295 XXXXXQISMPGLKKGSTYLRPKK 227 +I PG K+ + P++ Sbjct: 1198 SVRSTKIYTPGRKEQGEPMTPRR 1220 Score = 27.7 bits (60), Expect(2) = 5e-36 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 692 DVVRKAICSAYFP*LGKVEG 633 D+VRK IC+AYF K++G Sbjct: 1067 DIVRKCICAAYFHQAAKLKG 1086
>MOG1_CAEEL (P34498) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase| mog-1 (EC 3.6.1.-) (Sex determination protein mog-1) (Masculinization of germ line protein 1) Length = 1131 Score = 132 bits (333), Expect(2) = 8e-33 Identities = 57/79 (72%), Positives = 70/79 (88%) Frame = -2 Query: 655 HNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDP 476 HN+ARLKGIGEYVN R G+PC LHP+SAL+G+G+ PDYVVYHEL++T KEYMQCV+AVD Sbjct: 989 HNAARLKGIGEYVNVRTGIPCFLHPTSALFGMGFMPDYVVYHELIMTAKEYMQCVTAVDA 1048 Query: 475 QWLAELGPMFFSVKDTDTS 419 WLAELGPMF+S+K++ S Sbjct: 1049 IWLAELGPMFYSIKESKQS 1067 Score = 27.7 bits (60), Expect(2) = 8e-33 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 692 DVVRKAICSAYFP*LGKVEG 633 D+VRK ICSAYF +++G Sbjct: 977 DIVRKCICSAYFHNAARLKG 996
>PRP16_SCHPO (Q9P774) Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16| (EC 3.6.1.-) Length = 1173 Score = 117 bits (294), Expect(2) = 2e-27 Identities = 51/75 (68%), Positives = 64/75 (85%) Frame = -2 Query: 655 HNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDP 476 H +A KGIGEYV+ R+GMPCHLH +S+LYGLGY PDYV+YHELVLT+KEYM V++VDP Sbjct: 1038 HQAACAKGIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDP 1097 Query: 475 QWLAELGPMFFSVKD 431 WLAE G +++SVK+ Sbjct: 1098 YWLAEFGGVYYSVKE 1112 Score = 24.6 bits (52), Expect(2) = 2e-27 Identities = 8/12 (66%), Positives = 11/12 (91%) Frame = -1 Query: 692 DVVRKAICSAYF 657 D+VR+ +CSAYF Sbjct: 1026 DIVRRVLCSAYF 1037
>PRP16_YEAST (P15938) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16| (EC 3.6.1.-) Length = 1071 Score = 89.4 bits (220), Expect = 1e-17 Identities = 37/75 (49%), Positives = 56/75 (74%) Frame = -2 Query: 658 SHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVD 479 +H +A++ G+ YV+ + G+ LHP+SAL+GLG P YVVYHEL++T+KEY+ CV++VD Sbjct: 912 AHQAAKITGLRNYVHLKTGVSVQLHPTSALHGLGDLPPYVVYHELLMTSKEYICCVTSVD 971 Query: 478 PQWLAELGPMFFSVK 434 P WL E G + + +K Sbjct: 972 PFWLMEYGGLLYDIK 986
>DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase| (EC 3.6.1.-) Length = 1168 Score = 74.7 bits (182), Expect = 2e-13 Identities = 35/68 (51%), Positives = 50/68 (73%) Frame = -2 Query: 598 PCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWLAELGPMFFSVKDTDTS 419 P ++HPSSAL+ PD+V+YH+LV+TTKEYM+ V+ +DP+WL EL P FF V +D + Sbjct: 1082 PVYIHPSSALFQR--QPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKV--SDPT 1137 Query: 418 LLDHKKRQ 395 + +KRQ Sbjct: 1138 KMSKRKRQ 1145
>DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-) (DEAH box| protein 8) (RNA helicase HRH1) Length = 1220 Score = 74.3 bits (181), Expect = 3e-13 Identities = 37/66 (56%), Positives = 47/66 (71%) Frame = -2 Query: 592 HLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWLAELGPMFFSVKDTDTSLL 413 ++HPSSAL+ P++VVYHELVLTTKEYM+ V+ +DP+WL E P FF V D T L Sbjct: 1134 YIHPSSALFNR--QPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSD-PTKLS 1190 Query: 412 DHKKRQ 395 KK+Q Sbjct: 1191 KQKKQQ 1196
>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase| mog-5 (EC 3.6.1.-) (Sex determination protein mog-5) (Masculinization of germ line protein 5) Length = 1200 Score = 73.2 bits (178), Expect = 7e-13 Identities = 38/86 (44%), Positives = 54/86 (62%) Frame = -2 Query: 652 NSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQ 473 N+A+ Y +G ++HPSSA + P++VVYHELV+TTKEYM+ V+A+DP+ Sbjct: 1089 NAAKRDPQEGYRTLTDGQNVYIHPSSACFQ--QQPEWVVYHELVMTTKEYMREVTAIDPK 1146 Query: 472 WLAELGPMFFSVKDTDTSLLDHKKRQ 395 WL E P FF + D+ T L K+ Q Sbjct: 1147 WLVEFAPSFFKIGDS-TKLSTFKRNQ 1171
>PRP22_YEAST (P24384) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22| (EC 3.6.1.-) Length = 1145 Score = 68.2 bits (165), Expect = 2e-11 Identities = 31/77 (40%), Positives = 48/77 (62%) Frame = -2 Query: 652 NSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQ 473 N+A+ Y G +HPSS+LYG Y +YV+YH +VLT++EYM V++++PQ Sbjct: 1032 NAAKRDSQVGYKTINGGTEVGIHPSSSLYGKEY--EYVMYHSIVLTSREYMSQVTSIEPQ 1089 Query: 472 WLAELGPMFFSVKDTDT 422 WL E+ P F+ D ++ Sbjct: 1090 WLLEVAPHFYKAGDAES 1106
>DHX8_SCHPO (O42643) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase| C10F6.02c (EC 3.6.1.-) Length = 1168 Score = 62.8 bits (151), Expect(2) = 2e-10 Identities = 28/62 (45%), Positives = 39/62 (62%) Frame = -2 Query: 628 GEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWLAELGPM 449 G Y P ++HPS L+G ++V+YHEL+ T+KEYM VS V+P+WL E+ P Sbjct: 1069 GCYKTIVENAPVYMHPSGVLFGKA--AEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAPT 1126 Query: 448 FF 443 FF Sbjct: 1127 FF 1128 Score = 22.3 bits (46), Expect(2) = 2e-10 Identities = 7/21 (33%), Positives = 14/21 (66%) Frame = -1 Query: 692 DVVRKAICSAYFP*LGKVEGH 630 +++ +A+CS YF + K + H Sbjct: 1047 ELILRALCSGYFTNVAKRDSH 1067
>DHX15_SCHPO (O42945) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase prp43 (EC 3.6.1.-) Length = 735 Score = 63.2 bits (152), Expect = 7e-10 Identities = 29/68 (42%), Positives = 44/68 (64%) Frame = -2 Query: 622 YVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWLAELGPMFF 443 YV ++ LHPS GL TP++VVY+E VLTTK +++ V+A+ P+WL EL P ++ Sbjct: 648 YVTMKDNQVVSLHPSC---GLSVTPEWVVYNEFVLTTKSFIRNVTAIRPEWLIELAPNYY 704 Query: 442 SVKDTDTS 419 + D D + Sbjct: 705 DLDDFDNN 712
>DHX35_PONPY (Q5RBD4) Probable ATP-dependent RNA helicase DHX35 (EC 3.6.1.-)| (DEAH box protein 35) Length = 720 Score = 60.1 bits (144), Expect = 6e-09 Identities = 28/70 (40%), Positives = 43/70 (61%) Frame = -2 Query: 652 NSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQ 473 N+AR G Y R+ H+HP+S LY P +V+Y+E++ T+K YM+ V+A++ Sbjct: 617 NAARFHSTGAYRTIRDDHELHIHPASVLYA-EKPPRWVIYNEVIQTSKYYMRDVTAIESA 675 Query: 472 WLAELGPMFF 443 WL EL P F+ Sbjct: 676 WLLELAPHFY 685
>DHX35_HUMAN (Q9H5Z1) Probable ATP-dependent RNA helicase DHX35 (EC 3.6.1.-)| (DEAH box protein 35) Length = 703 Score = 60.1 bits (144), Expect = 6e-09 Identities = 28/70 (40%), Positives = 43/70 (61%) Frame = -2 Query: 652 NSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQ 473 N+AR G Y R+ H+HP+S LY P +V+Y+E++ T+K YM+ V+A++ Sbjct: 617 NAARFHSTGAYRTIRDDHELHIHPASVLYA-EKPPRWVIYNEVIQTSKYYMRDVTAIESA 675 Query: 472 WLAELGPMFF 443 WL EL P F+ Sbjct: 676 WLLELAPHFY 685
>DHX15_MOUSE (O35286) Putative pre-mRNA-splicing factor ATP-dependent RNA| helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15) Length = 795 Score = 56.6 bits (135), Expect = 7e-08 Identities = 23/72 (31%), Positives = 44/72 (61%) Frame = -2 Query: 646 ARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWL 467 A L+ G Y+ ++ LHPS+ L + P++V+Y+E VLTTK Y++ + + P+WL Sbjct: 702 AHLERTGHYLTVKDNQVVQLHPSTVL---DHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 758 Query: 466 AELGPMFFSVKD 431 ++ P ++ + + Sbjct: 759 VKIAPQYYDMSN 770
>DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-dependent RNA| helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15) (ATP-dependent RNA helicase #46) Length = 795 Score = 56.6 bits (135), Expect = 7e-08 Identities = 23/72 (31%), Positives = 44/72 (61%) Frame = -2 Query: 646 ARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWL 467 A L+ G Y+ ++ LHPS+ L + P++V+Y+E VLTTK Y++ + + P+WL Sbjct: 702 AHLERTGHYLTVKDNQVVQLHPSTVL---DHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 758 Query: 466 AELGPMFFSVKD 431 ++ P ++ + + Sbjct: 759 VKIAPQYYDMSN 770
>CDC28_SCHPO (Q10752) Putative ATP-dependent RNA helicase cdc28 (EC 3.6.1.-)| Length = 1055 Score = 56.2 bits (134), Expect = 9e-08 Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Frame = -2 Query: 652 NSARLKGIGE-YVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDP 476 N+ARL G+ Y ++ ++HPSS++ P ++Y ELVLTTKEY + ++ + P Sbjct: 970 NAARLDRSGDSYRTVKSNQTVYIHPSSSV--AEKKPKVIIYFELVLTTKEYCRQITEIQP 1027 Query: 475 QWLAELGPMFFSVKDTD 425 +WL E+ P +F ++ + Sbjct: 1028 EWLLEISPHYFKPENIE 1044
>DHX15_CAEEL (Q20875) Putative pre-mRNA-splicing factor ATP-dependent RNA| helicase F56D2.6 (EC 3.6.1.-) Length = 739 Score = 55.8 bits (133), Expect = 1e-07 Identities = 24/70 (34%), Positives = 44/70 (62%) Frame = -2 Query: 646 ARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWL 467 A L+ G YV ++ +LHPS+ L + P++ +Y+E VLTTK +++ V+ V P+WL Sbjct: 646 AHLERSGHYVTVKDNQLVNLHPSTVL---DHKPEWALYNEFVLTTKNFIRTVTDVRPEWL 702 Query: 466 AELGPMFFSV 437 ++ P ++ + Sbjct: 703 LQIAPQYYDL 712
>DHX16_CAEEL (O45244) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase| mog-4 (EC 3.6.1.-) (Sex determination protein mog-4) (Masculinization of germ line protein 4) Length = 1008 Score = 55.5 bits (132), Expect = 2e-07 Identities = 26/77 (33%), Positives = 46/77 (59%) Frame = -2 Query: 655 HNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDP 476 +N ++L G Y ++ H HP+S L+ TP +VVY ELV T+KE+M+ +S ++ Sbjct: 914 YNVSKLDNTGHYKTVKHKHTTHPHPNSCLFE--ETPRWVVYFELVFTSKEFMREMSEIES 971 Query: 475 QWLAELGPMFFSVKDTD 425 WL E+ P ++ ++ + Sbjct: 972 GWLLEVAPHYYKGRELE 988
>DHX16_HUMAN (O60231) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase| DHX16 (EC 3.6.1.-) (DEAH-box protein 16) (ATP-dependent RNA helicase #3) Length = 1041 Score = 54.7 bits (130), Expect = 3e-07 Identities = 27/77 (35%), Positives = 47/77 (61%) Frame = -2 Query: 655 HNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDP 476 +++ARL G Y + +HP+S+L+ P +++YHELVLTTKE+M+ V ++ Sbjct: 949 YHTARLTRSG-YRTVKQQQTVFIHPNSSLFE--QQPRWLLYHELVLTTKEFMRQVLEIES 1005 Query: 475 QWLAELGPMFFSVKDTD 425 WL E+ P ++ K+ + Sbjct: 1006 SWLLEVAPHYYKAKELE 1022
>DHX16_PANTR (Q7YR39) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase| DHX16 (EC 3.6.1.-) (DEAH-box protein 16) (ATP-dependent RNA helicase #3) Length = 1044 Score = 54.7 bits (130), Expect = 3e-07 Identities = 27/77 (35%), Positives = 47/77 (61%) Frame = -2 Query: 655 HNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDP 476 +++ARL G Y + +HP+S+L+ P +++YHELVLTTKE+M+ V ++ Sbjct: 952 YHTARLTRSG-YRTVKQQQTVFIHPNSSLFE--QQPRWLLYHELVLTTKEFMRQVLEIES 1008 Query: 475 QWLAELGPMFFSVKDTD 425 WL E+ P ++ K+ + Sbjct: 1009 SWLLEVAPHYYKAKELE 1025
>PRP43_YEAST (P53131) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43| (EC 3.6.1.-) (Helicase JA1) Length = 767 Score = 54.3 bits (129), Expect = 3e-07 Identities = 22/68 (32%), Positives = 43/68 (63%) Frame = -2 Query: 634 GIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWLAELG 455 G Y+ ++ +HPS+ L G+ ++V+Y+E VLT+K Y++ V++V P+WL E+ Sbjct: 666 GAKGYITVKDNQDVLIHPSTVL---GHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIA 722 Query: 454 PMFFSVKD 431 P ++ + + Sbjct: 723 PAYYDLSN 730
>DHX15_ARATH (O22899) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase (EC 3.6.1.-) Length = 729 Score = 51.6 bits (122), Expect = 2e-06 Identities = 21/72 (29%), Positives = 44/72 (61%) Frame = -2 Query: 646 ARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWL 467 A L+ G Y+ ++ HLHPS+ L + P++V+Y+E VLTT+ +++ V+ + +WL Sbjct: 633 AHLERTGHYLTVKDNQVVHLHPSNCL---DHKPEWVIYNEYVLTTRNFIRTVTDIRGEWL 689 Query: 466 AELGPMFFSVKD 431 ++ ++ + + Sbjct: 690 VDVAQHYYDLSN 701
>PRH1_SCHPO (Q03319) Probable ATP-dependent RNA helicase prh1 (EC 3.6.1.-)| Length = 719 Score = 50.4 bits (119), Expect = 5e-06 Identities = 26/75 (34%), Positives = 41/75 (54%) Frame = -2 Query: 652 NSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQ 473 N+A L G Y +HPSS+L+G + ++YHELV TTK Y++ VS++ Sbjct: 647 NTALLHPDGSYRTIIGNQTISIHPSSSLFGKKV--EAIMYHELVFTTKSYVRGVSSIRSN 704 Query: 472 WLAELGPMFFSVKDT 428 WL + P + + + T Sbjct: 705 WLNAVAPHYLARRST 719
>DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)| (DEAH box protein 33) Length = 707 Score = 50.1 bits (118), Expect = 6e-06 Identities = 28/73 (38%), Positives = 38/73 (52%) Frame = -2 Query: 652 NSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQ 473 ++A L+ G Y P +HPSS L+ P VVY EL+ T K YM+ + +D Q Sbjct: 631 STAELQPDGTYATTDTHQPVAIHPSSVLFHC--KPACVVYTELLYTNKCYMRDLCVIDAQ 688 Query: 472 WLAELGPMFFSVK 434 WL E P +F K Sbjct: 689 WLYEAAPEYFRRK 701
>DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)| (DEAH box protein 33) Length = 698 Score = 49.3 bits (116), Expect = 1e-05 Identities = 30/82 (36%), Positives = 39/82 (47%) Frame = -2 Query: 679 RLSARHTSHNSARLKGIGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYM 500 R A N+A L+ G Y P +HPSS L+ P VVY L+ T K YM Sbjct: 613 RCMAHSLFMNTAELQTDGTYATTDTHQPVAIHPSSVLFHC--KPACVVYTSLLYTNKCYM 670 Query: 499 QCVSAVDPQWLAELGPMFFSVK 434 + + VD +WL E P +F K Sbjct: 671 RDLCVVDAEWLYEAAPDYFRRK 692
>DHX37_HUMAN (Q8IY37) Probable ATP-dependent RNA helicase DHX37 (EC 3.6.1.-) (DEAH| box protein 37) Length = 1157 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/51 (47%), Positives = 34/51 (66%) Frame = -2 Query: 598 PCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWLAELGPMF 446 P +HPSS L+ P++VVY E+V TTK YM+ VS+V+ QW+ L P + Sbjct: 963 PVFIHPSSVLFK--ELPEFVVYQEIVETTKMYMKGVSSVEVQWIPALLPSY 1011
>DHR2_YEAST (P36009) Probable ATP-dependent RNA helicase DHR2 (EC 3.6.1.-)| (DEAH box RNA helicase DHR2) (Helicase JA2) Length = 735 Score = 38.5 bits (88), Expect = 0.020 Identities = 21/55 (38%), Positives = 29/55 (52%) Frame = -2 Query: 622 YVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWLAEL 458 Y G P +HPSS L+ P ++Y E V TTK Y + VS ++ WL E+ Sbjct: 666 YRTVSTGEPISIHPSSMLFMNKSCPG-IMYTEYVFTTKGYARNVSRIELSWLQEV 719
>DHX35_CAEEL (Q9BKQ8) Probable ATP-dependent RNA helicase DHX35 homolog (EC| 3.6.1.-) Length = 732 Score = 35.8 bits (81), Expect = 0.13 Identities = 17/77 (22%), Positives = 43/77 (55%) Frame = -2 Query: 628 GEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWLAELGPM 449 G+Y+ + P +++ S++ P +V++ E++ ++ ++ V+ ++P+WL EL P Sbjct: 647 GKYMTVKESFPFNMYKGSSIMFKKDYPKWVIFTEVM---QDSIRDVTVIEPEWLYELAPH 703 Query: 448 FFSVKDTDTSLLDHKKR 398 ++ T+ L + + R Sbjct: 704 YYEF-GTEGELAEKRMR 719
>YKQ0_CAEEL (P34305) Putative ATP-dependent RNA helicase C06E1.10 in chromosome| III (EC 3.6.1.-) Length = 1148 Score = 34.3 bits (77), Expect = 0.37 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Frame = -2 Query: 550 PDYVVYHELV-LTTKEYMQCVSAVDPQWLAELGPMFFSVKDTD 425 P++V+Y ELV + K+ M V AVD +WL+ L + + + D Sbjct: 955 PEFVIYQELVQVNEKKLMTSVCAVDKEWLSRLAESYCNYGEQD 997
>PRP2_YEAST (P20095) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2| (EC 3.6.1.-) Length = 876 Score = 34.3 bits (77), Expect = 0.37 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%) Frame = -2 Query: 604 GMPCHLHPSSALY-----GLGYTPDYVVYHELVLTTKEYMQ-CVSAVDPQWLAELGPMFF 443 G+ +HP+S L+ YV+Y +L+LT+KE+++ C+ +WL ++ P F Sbjct: 804 GLNVSVHPTSILFVNHKEKAQRPSKYVLYQQLMLTSKEFIRDCLVIPKEEWLIDMVPQIF 863
>KZ_DROME (O46072) Probable ATP-dependent RNA helicase kurz (EC 3.6.1.-)| Length = 1192 Score = 32.7 bits (73), Expect = 1.1 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 5/61 (8%) Frame = -2 Query: 598 PCHLHPSSALYGLGYTPDYVVYHELVL-----TTKEYMQCVSAVDPQWLAELGPMFFSVK 434 P LH SS L P++V+Y E +TK +++ ++A++P+WL P+ +++ Sbjct: 988 PAFLHVSSVLRQKA--PEWVIYQEAYELQNGDSTKMFIRGITAIEPEWLLLYVPLLCNIR 1045 Query: 433 D 431 + Sbjct: 1046 E 1046
>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)| Length = 2813 Score = 31.6 bits (70), Expect = 2.4 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Frame = +2 Query: 44 QFCKCY-IHVCCTCCXSAGLNYYIPS-GVTGSPTYSYCTGFPRPTKNTIHCKSLFELCYL 217 Q C C ++ C C G P+ G GS T SY P P + HC L +L +L Sbjct: 1223 QICHCDGVNFTCQACREPGSLVVPPTEGPIGSTT-SYVEDTPEPPLHDFHCSRLLDLVFL 1281
>VH21_SFVKA (Q9Q909) Probable host range protein 2-1| Length = 158 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Frame = -2 Query: 529 ELVLTTKEYMQCVSAVDPQWLAELGPMFFSVKDTDTSL-LDHK 404 +L L TK+ ++ V ++P+W+ E+ PM+ + L LD+K Sbjct: 34 KLKLNTKKSVRFVVLLEPEWIDEIKPMYMKLNGVSVDLKLDYK 76
>HRPA_HAEIN (P45018) ATP-dependent RNA helicase hrpA homolog (EC 3.6.1.-)| Length = 1304 Score = 30.8 bits (68), Expect = 4.1 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = -2 Query: 664 HTSHNSARLKGIG-------EYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKE 506 HT+ S L IG +Y+ RN + P+S L+ P +V+ ELV T+K Sbjct: 629 HTALLSGLLSHIGLKEAEKQQYLGARNAHFA-IFPNSVLFKK--QPKWVMAAELVETSKL 685 Query: 505 YMQCVSAVDPQWLAEL 458 + + V+ ++P+W+ L Sbjct: 686 WGRMVAEIEPEWIEPL 701 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,024,912 Number of Sequences: 219361 Number of extensions: 1734762 Number of successful extensions: 5053 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4882 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5032 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
