ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15p24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZCH10_RAT (Q5EB97) Zinc finger CCHC domain-containing protein 10 44 4e-04
2ZCH10_MOUSE (Q9CX48) Zinc finger CCHC domain-containing protein 10 44 4e-04
3ZCH10_HUMAN (Q8TBK6) Zinc finger CCHC domain-containing protein 10 42 0.002

>ZCH10_RAT (Q5EB97) Zinc finger CCHC domain-containing protein 10|
          Length = 173

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = -3

Query: 719 GHWTYECKNERVYISRPSRTDQLK 648
           GHWTYECK +R Y+ RPSRT +LK
Sbjct: 30  GHWTYECKGKRKYLHRPSRTAELK 53



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>ZCH10_MOUSE (Q9CX48) Zinc finger CCHC domain-containing protein 10|
          Length = 178

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = -3

Query: 719 GHWTYECKNERVYISRPSRTDQLK 648
           GHWTYECK +R Y+ RPSRT +LK
Sbjct: 30  GHWTYECKGKRKYLHRPSRTAELK 53



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>ZCH10_HUMAN (Q8TBK6) Zinc finger CCHC domain-containing protein 10|
          Length = 192

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = -3

Query: 719 GHWTYECKNERVYISRPSRTDQLK 648
           GHWTYEC  +R Y+ RPSRT +LK
Sbjct: 52  GHWTYECTGKRKYLHRPSRTAELK 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,390,261
Number of Sequences: 219361
Number of extensions: 942179
Number of successful extensions: 2300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2300
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7762912789
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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