Clone Name | rbasd15p22 |
---|---|
Clone Library Name | barley_pub |
>EMF2_ARATH (Q8L6Y4) Polycomb protein EMBRYONIC FLOWER 2| Length = 631 Score = 55.8 bits (133), Expect = 1e-07 Identities = 21/29 (72%), Positives = 22/29 (75%) Frame = -3 Query: 650 WCWRFVMIKLWNHNLLDARAMNTCNMILE 564 WCWR M+KLWNH LLDAR MN CN LE Sbjct: 599 WCWRVFMVKLWNHGLLDARTMNNCNTFLE 627
>VRN2_ARATH (Q8W5B1) Polycomb group protein VERNALIZATION 2| Length = 440 Score = 52.0 bits (123), Expect = 2e-06 Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 12/71 (16%) Frame = -3 Query: 650 WCWRFVMIKLWNHNLLDARAMNTCNMILEGYH------------PHPKKKT*VDRAPVDH 507 WCWR +IKLWNH L+D+ +N CN ILE HP + VDH Sbjct: 361 WCWRLFLIKLWNHGLVDSATINNCNTILENCRNTSVTNNNNNSVDHPSDSNTNNNNIVDH 420 Query: 506 PIPHPKKM*VD 474 P K VD Sbjct: 421 PNDIKNKNNVD 431
>FIS2_ARATH (Q9ZNT9) Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2| Length = 632 Score = 35.0 bits (79), Expect = 0.19 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 Query: 650 WCWRFVMIKLWNHNLLDARAMNTCNMIL 567 W WR IKLWN+ L+ A+ + C IL Sbjct: 577 WWWRMFRIKLWNNGLICAKTFHKCTTIL 604
>NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fragment)| Length = 434 Score = 34.7 bits (78), Expect = 0.25 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 5/74 (6%) Frame = -3 Query: 557 HPHPKKKT*VDRAPVDHPIPHPKKM*VDRAPVDHPIPHPKKM*V-----DRAPVDHPIPR 393 HP P ++ P+++P PH K P+++P PH K ++ P+++P+P Sbjct: 37 HPPPVHPPPHEKPPIEYPPPHTK------PPIEYPPPHVKPPIQYPPPHEKPPIEYPLPH 90 Query: 392 SSTCGSSHSPPQEE 351 + PP E+ Sbjct: 91 EKP--PVYEPPYEK 102 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Frame = -3 Query: 554 PHPKKKT*VDRAPVDHPIPHPK----KM*VDRAPVDHPIPHPKKM*VDRAPVDHPIPRSS 387 P P + D+ P+++P PH K + +R+P HP H ++ P +P P Sbjct: 232 PPPAQPPPHDKPPIEYPPPHEKPPVYEPPYERSPPVHPPSH------EKPPFVYPPPHEK 285 Query: 386 TCGSSHSPPQEE 351 + H PP E+ Sbjct: 286 S--PMHEPPYEK 295 Score = 31.2 bits (69), Expect = 2.8 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Frame = -3 Query: 527 DRAPVDHPIPHPK----KM*VDRAPVDHPIPHPKKM*VDRAPVDHPIPRSSTCGSSHSPP 360 ++ P+++P+PH K + ++ P HP PH ++ P+++ P H PP Sbjct: 80 EKPPIEYPLPHEKPPVYEPPYEKPPPVHPPPH------EKPPIEYSPPHEKP--PVHEPP 131 Query: 359 QEE 351 E+ Sbjct: 132 YEK 134 Score = 29.6 bits (65), Expect = 8.1 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Frame = -3 Query: 557 HPHPKKKT*VDRAPVDHPIPHPK----KM*VDRAPVDHPIP-HPKKM*VDRAPVDHPIPR 393 HP P +K P+ HP PH K + ++ P HP P HP ++ P+++P P Sbjct: 5 HPPPHEKP-----PIVHPPPHEKPPLFEPPFEKPPPAHPPPVHPPPH--EKPPIEYPPPH 57 Query: 392 S 390 + Sbjct: 58 T 58
>YLU2_PICAN (P34735) Hypothetical protein in LEU2 3'region (Fragment)| Length = 373 Score = 28.9 bits (63), Expect(2) = 0.31 Identities = 20/47 (42%), Positives = 25/47 (53%) Frame = -2 Query: 543 EEDVSRSSTCGSSHSPPQEDVSRSSTCGSSHSPPQEDVSRSSTCGSS 403 EE+ SS+ SSHS + S SST S+ S +S SST SS Sbjct: 103 EENDDDSSSAQSSHSSTDDATSTSST--STTSSSSSSLSSSSTSSSS 147 Score = 24.3 bits (51), Expect(2) = 0.31 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -3 Query: 398 PRSSTCGSSHSPPQEEDMSRSST 330 P+SST S+ S P +S SST Sbjct: 153 PQSSTMSSTDSSPTSSSLSASST 175
>CN155_HUMAN (Q5H9T9) Protein C14orf155| Length = 837 Score = 33.5 bits (75), Expect = 0.56 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Frame = -2 Query: 561 IPPPP*EEDVSRSSTCGSSHSP------PQEDVSRSSTCGSSHSPPQEDVSRSSTCGSSH 400 + PPP EE S + +P P E+ T + HSPP +DV H Sbjct: 670 VQPPPAEEAPSEVQPPPAEEAPAEVQSLPAEETPIEETLAAVHSPPADDVPAEEASVDKH 729 Query: 399 SP 394 SP Sbjct: 730 SP 731 Score = 30.0 bits (66), Expect = 6.2 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 11/53 (20%) Frame = -2 Query: 561 IPPPP*EE-----------DVSRSSTCGSSHSPPQEDVSRSSTCGSSHSPPQE 436 + PPP EE + T + HSPP +DV HSPP + Sbjct: 682 VQPPPAEEAPAEVQSLPAEETPIEETLAAVHSPPADDVPAEEASVDKHSPPAD 734
>PHLA1_MOUSE (Q62392) Pleckstrin homology-like domain family A member 1 (T-cell| death-associated gene 51 protein) (Proline- and glutamine-rich protein) (PQR protein) Length = 261 Score = 32.7 bits (73), Expect = 0.96 Identities = 22/76 (28%), Positives = 30/76 (39%) Frame = -3 Query: 557 HPHPKKKT*VDRAPVDHPIPHPKKM*VDRAPVDHPIPHPKKM*VDRAPVDHPIPRSSTCG 378 HPHP + + P HP PHP HP PHP ++ P+ Sbjct: 207 HPHPHPYSHPHQHPHPHPHPHP-----------HPHPHPYQLQHAHQPL----------- 244 Query: 377 SSHSPPQEEDMSRSST 330 HS PQ + RS++ Sbjct: 245 --HSQPQGHRLLRSTS 258
>PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A member 1 (T-cell| death-associated gene 51 protein) (Apoptosis-associated nuclear protein) (Proline- and histidine-rich protein) (Proline- and glutamine-rich protein) (PQ-rich protein) Length = 259 Score = 32.0 bits (71), Expect = 1.6 Identities = 19/58 (32%), Positives = 26/58 (44%) Frame = -3 Query: 557 HPHPKKKT*VDRAPVDHPIPHPKKM*VDRAPVDHPIPHPKKM*VDRAPVDHPIPRSST 384 HPHP + P HP PHP ++ P HP PH + P H + RS++ Sbjct: 211 HPHPHPHSHPHSHPHPHPHPHPHQI-----PHPHPQPHSQ-------PHGHRLLRSTS 256 Score = 31.2 bits (69), Expect = 2.8 Identities = 21/60 (35%), Positives = 21/60 (35%) Frame = -3 Query: 557 HPHPKKKT*VDRAPVDHPIPHPKKM*VDRAPVDHPIPHPKKM*VDRAPVDHPIPRSSTCG 378 HPHP P HP PHP P H IPHP HP P S G Sbjct: 213 HPHPHSH------PHSHPHPHPH-------PHPHQIPHP-----------HPQPHSQPHG 248
>TNC6B_HUMAN (Q9UPQ9) Trinucleotide repeat-containing 6B protein| Length = 1723 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/52 (34%), Positives = 21/52 (40%) Frame = +2 Query: 359 GVGNGMIHRCSIGEWDDPQVLDRLTSSWGGEWDDPQVLDRLTSSWGGEWDDP 514 G GN M S GEW P D L GEW P + T +W + P Sbjct: 497 GEGNKMTSGVSQGEWKQPTGSDELKI---GEWSGPNQPNSSTGAWDNQKGHP 545
>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)| Length = 268 Score = 31.6 bits (70), Expect = 2.1 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Frame = -1 Query: 499 PTPRRCESIEH-----LWIIPFPTPRRCESIEHLWIIPFPDRAPVDHPIPHPKKKI*VDR 335 PTPR I H L P P+P S P P +P PIPHP+K+ Sbjct: 143 PTPRSSTPIPHPPRRSLPSPPSPSPSPSPS-------PSPSPSPRSTPIPHPRKRSPASP 195 Query: 334 APS 326 +PS Sbjct: 196 SPS 198
>KE4_CANFA (Q5TJF6) Zinc transporter SLC39A7 (Solute carrier family 39 member| 7) (Histidine-rich membrane protein Ke4) Length = 469 Score = 31.6 bits (70), Expect = 2.1 Identities = 23/94 (24%), Positives = 30/94 (31%) Frame = -2 Query: 591 HEHLQHDS*GIPPPP*EEDVSRSSTCGSSHSPPQEDVSRSSTCGSSHSPPQEDVSRSSTC 412 HE L D G ED + H E + T G H ED+ + Sbjct: 35 HEDLHEDFHGHSHRRSHEDFHHGHSYAHGHGHTHESIWHGHTHGHEHGHAHEDLHHGHSH 94 Query: 411 GSSHSPIEHLWIIPFPTPRRRYESIEHLPFHGGW 310 G SH + H R +H HGG+ Sbjct: 95 GQSHESLYH-----------RGHGHDHEHSHGGY 117
>Y4105_ARATH (Q9M158) Putative protein At4g01050| Length = 466 Score = 31.6 bits (70), Expect = 2.1 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = -3 Query: 515 VDHPIPHPKKM*VDRAPVDHPIPHPKKM*VDRAPVDHPIP 396 VD P+P P+ + VD P+P P+ PV P+P Sbjct: 384 VDKPVPEPETVAATTTTVDKPVPEPE-------PVPEPVP 416
>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-inter Length = 2897 Score = 30.8 bits (68), Expect = 3.6 Identities = 18/45 (40%), Positives = 22/45 (48%) Frame = -2 Query: 531 SRSSTCGSSHSPPQEDVSRSSTCGSSHSPPQEDVSRSSTCGSSHS 397 S SS+ SHS S SS+C S+ S S SS+ SS S Sbjct: 2149 SSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSS 2193
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 30.8 bits (68), Expect = 3.6 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = -3 Query: 479 VDRAPVDHPIPHPKKM*VDRAPVDHPIPRSSTCGSSHSPPQEEDM 345 VD +PV P K++ AP P +T S+ SP QEE+M Sbjct: 413 VDLSPVSEPEEQAKEVTASVAPPTIPSATPATAPSATSPAQEEEM 457
>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox| protein NK-1) Length = 659 Score = 30.8 bits (68), Expect = 3.6 Identities = 23/72 (31%), Positives = 25/72 (34%) Frame = -3 Query: 560 YHPHPKKKT*VDRAPVDHPIPHPKKM*VDRAPVDHPIPHPKKM*VDRAPVDHPIPRSSTC 381 +H HP P H PHP P HP PHP + RAP S Sbjct: 209 HHQHPAH-------PHSHQHPHPH-------PHPHPHPHPSAVFHLRAPSSSSTAPPSPA 254 Query: 380 GSSHSPPQEEDM 345 S SPP M Sbjct: 255 TSPLSPPTSPAM 266
>MURD_TREPA (O83873) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 532 Score = 30.4 bits (67), Expect = 4.8 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Frame = -2 Query: 516 CGSSHSPPQEDVSRSS--TCGSSHSPPQEDVSRSSTCGSSHSPIEH 385 C SHSP + + C S+HSP QE R + S++ IEH Sbjct: 348 CAHSHSPAYANHASPPDYACPSAHSPFQEHTRRLAQALESYTGIEH 393
>ZEP2_MOUSE (Q3UHF7) Human immunodeficiency virus type I enhancer-binding| protein 2 homolog (Myc intron-binding protein 1) (MIBP-1) Length = 2430 Score = 30.4 bits (67), Expect = 4.8 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Frame = -2 Query: 465 CGSSHSPPQEDVSRSSTCGSSHSPIEHL----WIIPFPTPRRRYESIEHLPFHG 316 C S S PQ +S+ T SH P + L W+ P P P E + P HG Sbjct: 94 CQHSLSFPQHSLSQGMT--HSHKPHQSLEGPPWLFPGPLPSVASEDLFPFPMHG 145
>ZC3H5_MOUSE (Q8BL48) Zinc finger CCCH-type domain-containing protein 5| Length = 810 Score = 30.4 bits (67), Expect = 4.8 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Frame = -2 Query: 561 IPPPP*EEDVSRSSTCGSSHSPP----QEDVSRSSTCGSSHSPPQEDVSRSSTCGSSHSP 394 I PPP +DV SS S P + S S SP D+S S Sbjct: 319 IEPPPLSDDVQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSGLGS 378 Query: 393 IEHLWIIPFPTPRRRYESIEHLPFHG 316 HL P P P R+ ++E L F G Sbjct: 379 PSHLCSSP-PGPSRKASNLEGLVFPG 403
>SGS3_DROSI (P13729) Salivary glue protein Sgs-3 precursor| Length = 217 Score = 30.4 bits (67), Expect = 4.8 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Frame = -2 Query: 555 PPP*EEDVSRSSTCGSSHSPPQEDV--SRSSTCGSSHSPPQEDVSRSSTCGSSHSPIEH 385 PP S S+T ++ +PP + S S+T ++ +PP S+T ++H P H Sbjct: 67 PPTKPTCKSTSTTTTTTRAPPTKPTCKSTSTTTTTTRAPPTTTCKTSTTTTTTHKPTTH 125
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 30.4 bits (67), Expect = 4.8 Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 11/93 (11%) Frame = -2 Query: 558 PPPP*EEDVSRS--STCGSSHSPPQEDVS------RSSTCGSSH---SPPQEDVSRSSTC 412 PPPP + S S S SHSPP + S RS + S H SPP SRS+ Sbjct: 610 PPPPPKRRASPSPQSKRRVSHSPPPKQRSSPAAKRRSPSISSKHRKGSPP----SRSNR- 664 Query: 411 GSSHSPIEHLWIIPFPTPRRRYESIEHLPFHGG 313 + SP ++ P P PR + S P G Sbjct: 665 -ETRSPPQNKRDSPSPRPRASHTSSSPPPLRRG 696
>RCOR2_XENLA (Q6NRZ0) REST corepressor 2| Length = 503 Score = 30.4 bits (67), Expect = 4.8 Identities = 23/69 (33%), Positives = 32/69 (46%) Frame = -2 Query: 555 PPP*EEDVSRSSTCGSSHSPPQEDVSRSSTCGSSHSPPQEDVSRSSTCGSSHSPIEHLWI 376 PPP D+S + T GSS +P +ED T SS S P + ++ S P+ I Sbjct: 394 PPPASTDMS-NKTSGSSQTPNEEDDEVQITSVSSSSQPAPPAAAAAASLSLPPPLLRPAI 452 Query: 375 IPFPTPRRR 349 PT R+ Sbjct: 453 PCAPTLHRQ 461
>YAS9_SCHPO (Q10145) Hypothetical RNA-binding protein C3H8.09c in chromosome I| Length = 738 Score = 30.4 bits (67), Expect = 4.8 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 9/67 (13%) Frame = -2 Query: 510 SSHSPPQEDVSRSSTCGSSHSPPQEDVSRSST---------CGSSHSPIEHLWIIPFPTP 358 +S SPP DV ++ S+ P +++ SST S H P + L + P Sbjct: 164 TSQSPPSLDVEQNKPFSISNEPVEQETENSSTKDLQVYDFQTASEHLPEQSLQNTTYYDP 223 Query: 357 RRRYESI 337 + Y S+ Sbjct: 224 SKTYSSV 230
>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein) (PPAR-alpha-interacting complex protein 320 kDa) Length = 2885 Score = 30.0 bits (66), Expect = 6.2 Identities = 18/45 (40%), Positives = 22/45 (48%) Frame = -2 Query: 531 SRSSTCGSSHSPPQEDVSRSSTCGSSHSPPQEDVSRSSTCGSSHS 397 S SS+ SHS S SS+C S+ S S SS+ SS S Sbjct: 2149 SSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSS 2193
>APBA1_RAT (O35430) Amyloid beta A4 precursor protein-binding family A member| 1 (Neuron-specific X11 protein) (Neuronal Munc18-1-interacting protein 1) (Mint-1) (Adapter protein X11alpha) Length = 839 Score = 30.0 bits (66), Expect = 6.2 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = -2 Query: 615 PQPTGCARHEHLQHDS*GIPPPP*EEDVSRSSTCGSSHS 499 P P G A +H H + PPPP EE+ R S S Sbjct: 43 PPPAGHAPEDHRAHPAPPPPPPPQEEEEERGECLARSAS 81
>SERI1_BOMMO (P07856) Sericin 1 precursor (Silk gum protein)| Length = 1186 Score = 30.0 bits (66), Expect = 6.2 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Frame = -2 Query: 537 DVSRSSTCGSS----HSPPQEDVSRSSTCGSSHSPPQEDVSRSSTCGSS 403 D++ SST G S +S D S SST SS++ D++ SST G S Sbjct: 910 DLAGSSTSGGSSTYGYSSDSRDGSVSSTGSSSNTDASTDLAGSSTSGGS 958 Score = 30.0 bits (66), Expect = 6.2 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Frame = -2 Query: 537 DVSRSSTCGSS----HSPPQEDVSRSSTCGSSHSPPQEDVSRSSTCGSS 403 D++ SST G S +S D S SST SS++ D++ SST G S Sbjct: 834 DLTGSSTSGGSSTYGYSSDSRDGSVSSTGSSSNTDASTDLAGSSTSGGS 882 Score = 29.6 bits (65), Expect = 8.1 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Frame = -2 Query: 537 DVSRSSTCGSS----HSPPQEDVSRSSTCGSSHSPPQEDVSRSSTCGSS 403 D++ SST G S +S D S SST SS++ D++ SST G S Sbjct: 948 DLAGSSTSGGSSTYGYSSNSRDGSVSSTGSSSNTDASTDLTGSSTSGGS 996
>Y4EE_RHISN (P55428) Hypothetical lipoprotein y4eE precursor| Length = 358 Score = 29.6 bits (65), Expect = 8.1 Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 12/103 (11%) Frame = -3 Query: 377 SSHSPPQEEDMSRSSTFHSMGVGFGWLLLNRIR-------GSMFVALK----EAFSFFLL 231 S + P + +R S +GF LL+ + R GS L +A+ F L Sbjct: 88 SFNLPRRSSIETREIASISPAMGFTVLLVEKTRDNTVSNGGSTLSLLSSNSNDAYLSFAL 147 Query: 230 TVKNSRRGSYWCFISKSMLQGNYKAMA-WQDVGRFEMIPSTNE 105 K S G W F +KS+LQGN A WQ ++ T + Sbjct: 148 GAKPSSSGQKWSF-AKSLLQGNKAQTAYWQKPWDMNLLGPTGD 189 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 110,418,472 Number of Sequences: 219361 Number of extensions: 2755695 Number of successful extensions: 7675 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 6244 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7517 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)