ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16e24 |
|---|---|
| Clone Library Name | barley_pub |
>CB029_MOUSE (Q9CWN7) Protein C2orf29 homolog| Length = 505 Score = 33.1 bits (74), Expect = 0.69 Identities = 21/63 (33%), Positives = 34/63 (53%) Frame = -1 Query: 373 TVARSSQPARLSFPSDQTSRTTTIHRPNSTITITKPTGPNRPMQKQNTRPKF*RPLPWHH 194 T +++S P+ LS P +S + S IT + +GP P++ + RP+F RP P H Sbjct: 229 TQSKASFPSILSDPDPDSSNSGFDSSVASRITESLVSGPKPPIES-HFRPEFIRPPPPLH 287 Query: 193 ACD 185 C+ Sbjct: 288 ICE 290
>CB029_HUMAN (Q9UKZ1) Protein C2orf29| Length = 510 Score = 32.7 bits (73), Expect = 0.90 Identities = 21/63 (33%), Positives = 33/63 (52%) Frame = -1 Query: 373 TVARSSQPARLSFPSDQTSRTTTIHRPNSTITITKPTGPNRPMQKQNTRPKF*RPLPWHH 194 T +++S P+ LS P +S + S IT +GP P++ + RP+F RP P H Sbjct: 234 TQSKASFPSILSDPDPDSSNSGFDSSVASQITEALVSGPKPPIES-HFRPEFIRPPPPLH 292 Query: 193 ACD 185 C+ Sbjct: 293 ICE 295
>P2RY2_RAT (P41232) P2Y purinoceptor 2 (P2Y2) (P2U purinoceptor 1) (P2U1) (ATP| receptor) (Purinergic receptor) Length = 374 Score = 32.0 bits (71), Expect = 1.5 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -1 Query: 367 ARSSQPARLSFPSDQTSRTTTIHRPNSTITITK 269 AR ++PA PS Q R +HRPN T T+ K Sbjct: 316 ARDAKPATEPTPSPQARRKLGLHRPNRTDTVRK 348
>PHT19_ARATH (Q9S735) Inorganic phosphate transporter 1-9 (AtPht1;9) (H(+)/Pi| cotransporter) Length = 532 Score = 31.6 bits (70), Expect = 2.0 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -2 Query: 219 FRGHCHGIMLATAEFAMVARKPSFLWTSQH 130 FR CHGI A +F + FLW ++H Sbjct: 436 FRSTCHGISGAAGKFGAIVGTVGFLWATRH 465
>IF5A4_LYCES (Q9AXQ3) Eukaryotic translation initiation factor 5A-4 (eIF-5A-4)| Length = 160 Score = 30.0 bits (66), Expect = 5.8 Identities = 17/65 (26%), Positives = 29/65 (44%) Frame = -2 Query: 483 EVDPAAYPTPATRALY*RRRGWRLTAGRKCKLLSKGTLLQGHHSQQGCPFLATRHRGRRQ 304 + D A T +A R+ G+ + GR CK++ T G H C F+A ++ Sbjct: 11 KADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKK 70 Query: 303 FIDLI 289 D++ Sbjct: 71 LEDIV 75
>IF2_VIBVY (Q7MI09) Translation initiation factor IF-2| Length = 907 Score = 30.0 bits (66), Expect = 5.8 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = -2 Query: 627 KQKSKSKLNKECLRDSETNMKQQMPRNRANKLKFVRRSHRTAKEVSGEE 481 ++K+K + RD+E +KQ+ R A +LK RR AK + EE Sbjct: 168 EEKAKRDAEGKAKRDAEEKVKQEAARKEAEELK--RRQEEEAKRKAEEE 214
>IF2_VIBVU (Q8DBW0) Translation initiation factor IF-2| Length = 907 Score = 30.0 bits (66), Expect = 5.8 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = -2 Query: 627 KQKSKSKLNKECLRDSETNMKQQMPRNRANKLKFVRRSHRTAKEVSGEE 481 ++K+K + RD+E +KQ+ R A +LK RR AK + EE Sbjct: 168 EEKAKRDAEGKAKRDAEEKVKQEAARKEAEELK--RRQEEEAKRKAEEE 214
>GRIPE_MOUSE (Q6GYP7) GTPase-activating RapGAP domain-like 1| (GAP-related-interacting partner to E12) (GRIPE) (Tuberin-like protein 1) Length = 2035 Score = 29.6 bits (65), Expect = 7.6 Identities = 17/63 (26%), Positives = 28/63 (44%) Frame = -3 Query: 287 NHNHHQTNWSEQADAKAEHQTQILEATAMASCLRLRSSPWLRGNLLSCGQVNTACHSTSX 108 NH T S + Q +L T + SC+++RS + G L+ G V+ + Sbjct: 1538 NHYSESTELSPELFESPNIQFFVLNNTTLVSCIQIRSEESMPGGGLAAGLVSANSNVRII 1597 Query: 107 LRD 99 +RD Sbjct: 1598 VRD 1600
>RVXX_VIPLE (Q7T046) Coagulation factor X-activating enzyme heavy chain| precursor (EC 3.4.24.58) (VLFXA heavy chain) (Coagulation factor X-activating enzyme alpha-chain) [Contains: Coagulation factor X-activating enzyme heavy chain alternate form] Length = 612 Score = 29.6 bits (65), Expect = 7.6 Identities = 32/122 (26%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Frame = -1 Query: 361 SSQPARL--SFPSDQTSRTTTIHRPNSTITITKPTGPNRPMQKQNTRPKF*RPLPWHHA- 191 SSQP++L + + R T ++P + N P++K P W Sbjct: 364 SSQPSKLFSNCSNHDYRRYLTTYKPKCIL--------NPPLRKDIASPPICGNEIWEEGE 415 Query: 190 -CDCGVRHGCAETFFPVD--KSTPLAIQQVLCETGNSXCL*LPQLSTCTPXLRGANNNCX 20 CDCG C K TP A E GN C ++ T R A + C Sbjct: 416 ECDCGSPKDCQNPCCDAATCKLTPGA------ECGNGLCCEKCKIKTAGTVCRRARDECD 469 Query: 19 VP 14 VP Sbjct: 470 VP 471
>IF5A3_SOLTU (P56335) Eukaryotic translation initiation factor 5A-3 (eIF-5A-3)| (eIF-4D) Length = 160 Score = 29.6 bits (65), Expect = 7.6 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = -2 Query: 483 EVDPAAYPTPATRALY*RRRGWRLTAGRKCKLLSKGTLLQGHHSQQGCPFLA 328 + D A T +A R+ G+ + GR CK++ T G H C F+A Sbjct: 11 KADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVA 62
>IF5A3_LYCES (Q9AXQ4) Eukaryotic translation initiation factor 5A-3 (eIF-5A-3)| Length = 159 Score = 29.6 bits (65), Expect = 7.6 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = -2 Query: 483 EVDPAAYPTPATRALY*RRRGWRLTAGRKCKLLSKGTLLQGHHSQQGCPFLA 328 + D A T +A R+ G+ + GR CK++ T G H C F+A Sbjct: 11 KADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVA 62
>IF5A2_LYCES (Q9AXQ5) Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)| Length = 160 Score = 29.3 bits (64), Expect = 10.0 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = -2 Query: 483 EVDPAAYPTPATRALY*RRRGWRLTAGRKCKLLSKGTLLQGHHSQQGCPFLA 328 + D A T +A R+ G+ + GR CK++ T G H C F+A Sbjct: 11 KADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVA 62
>IF5A1_SOLTU (P56333) Eukaryotic translation initiation factor 5A-1/2| (eIF-5A-1/2) (eIF-4D) Length = 160 Score = 29.3 bits (64), Expect = 10.0 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = -2 Query: 483 EVDPAAYPTPATRALY*RRRGWRLTAGRKCKLLSKGTLLQGHHSQQGCPFLA 328 + D A T +A R+ G+ + GR CK++ T G H C F+A Sbjct: 11 KADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVA 62
>TSP4_RAT (P49744) Thrombospondin-4 precursor| Length = 980 Score = 29.3 bits (64), Expect = 10.0 Identities = 17/59 (28%), Positives = 26/59 (44%) Frame = -1 Query: 394 QAAIQRNTVARSSQPARLSFPSDQTSRTTTIHRPNSTITITKPTGPNRPMQKQNTRPKF 218 + + RNT+A LSF S PN+ + I P P RP ++ ++ P F Sbjct: 265 ETSFLRNTIAECQACGPLSFQSPT---------PNTLVPIAPPAPPTRPTRRCDSSPCF 314
>IF5A4_SOLTU (P56336) Eukaryotic translation initiation factor 5A-4 (eIF-5A-4)| (eIF-4D) Length = 159 Score = 29.3 bits (64), Expect = 10.0 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = -2 Query: 483 EVDPAAYPTPATRALY*RRRGWRLTAGRKCKLLSKGTLLQGHHSQQGCPFLA 328 + D A T +A R+ G+ + GR CK++ T G H C F+A Sbjct: 11 KADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVA 62 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,522,945 Number of Sequences: 219361 Number of extensions: 1572141 Number of successful extensions: 4522 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4388 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4521 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
