Clone Name | rbasd16e24 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK067305.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100P11, full insert sequence Length = 3130 Score = 113 bits (57), Expect = 7e-22 Identities = 164/200 (82%), Gaps = 6/200 (3%) Strand = Plus / Minus Query: 352 gctgtgatgaccttgcaacagtgttcctttggatagcagcttgcattttcgcccggctgt 411 |||| |||| |||||| | ||| |||||||| |||||||||| |||||| ||| | |||| Sbjct: 2555 gctgagatgtccttgctatagtattcctttgaatagcagctttcatttttgcctgactgt 2496 Query: 412 caacctccatcctcgccttcttcaatatagggctcttgtagctggagttggataggctgc 471 |||||||||||| || || || | ||||||||||| |||||||| |||| ||| Sbjct: 2495 taacctccatccttgcttttttaagaatagggctcttatagctgga------taggttgc 2442 Query: 472 tggatccacttcctccccagaaacttcttttgctgttcggtgggatcttcgtacaaactt 531 ||| |||||||||||| | ||||||||||||||| | ||||| | ||||||||||| || Sbjct: 2441 tgggtccacttcctccgaaaaaacttcttttgctgcttggtggcaccttcgtacaaattt 2382 Query: 532 taatttgtttgctctgtttc 551 |||||||||| || |||||| Sbjct: 2381 taatttgtttactttgtttc 2362 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 255 ttcggaccagttggtttggtgatggttatggttgaattaggtcgatgaattgtcgt 310 ||||||||||||||||| |||||||| ||||||||||| |||| |||||| ||||| Sbjct: 2652 ttcggaccagttggtttagtgatggtaatggttgaattgggtctatgaatagtcgt 2597
>gb|AY110608.1| Zea mays CL7462_1 mRNA sequence Length = 1000 Score = 105 bits (53), Expect = 2e-19 Identities = 131/157 (83%) Strand = Plus / Minus Query: 350 tggctgtgatgaccttgcaacagtgttcctttggatagcagcttgcattttcgcccggct 409 |||||| |||||||| |||| ||| ||| |||| ||||||| |||| | | || || || Sbjct: 624 tggctgagatgacctcgcaaaagtattcttttgcatagcagactgcaatcttgctcgact 565 Query: 410 gtcaacctccatcctcgccttcttcaatatagggctcttgtagctggagttggataggct 469 || |||||| ||||| |||||||||| ||||||||||||||||||||| |||||| || Sbjct: 564 gttaacctctatcctagccttcttcagtatagggctcttgtagctggaactggatacact 505 Query: 470 gctggatccacttcctccccagaaacttcttttgctg 506 ||| | |||||||||||| ||||||| ||||||||| Sbjct: 504 gctaggtccacttcctccaaagaaactccttttgctg 468
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 255 ttcggaccagttggtttggtgatggttatggttgaattaggtcgatgaattgtcgt 310 ||||||||||||||||| |||||||| ||||||||||| |||| |||||| ||||| Sbjct: 4062459 ttcggaccagttggtttagtgatggtaatggttgaattgggtctatgaatagtcgt 4062404 Score = 63.9 bits (32), Expect = 6e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 492 aaacttcttttgctgttcggtgggatcttcgtacaaactttaatttgtttgctctgtttc 551 ||||||||||||||| | ||||| | ||||||||||| |||||||||||| || |||||| Sbjct: 4061951 aaacttcttttgctgcttggtggcaccttcgtacaaattttaatttgtttactttgtttc 4061892 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 ttcaacttgcttttgctttt 621 |||||||||||||||||||| Sbjct: 2688553 ttcaacttgcttttgctttt 2688534
>dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0462E11 Length = 166115 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 255 ttcggaccagttggtttggtgatggttatggttgaattaggtcgatgaattgtcgt 310 ||||||||||||||||| |||||||| ||||||||||| |||| |||||| ||||| Sbjct: 149756 ttcggaccagttggtttagtgatggtaatggttgaattgggtctatgaatagtcgt 149701 Score = 63.9 bits (32), Expect = 6e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 492 aaacttcttttgctgttcggtgggatcttcgtacaaactttaatttgtttgctctgtttc 551 ||||||||||||||| | ||||| | ||||||||||| |||||||||||| || |||||| Sbjct: 149248 aaacttcttttgctgcttggtggcaccttcgtacaaattttaatttgtttactttgtttc 149189
>dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0458D06 Length = 166038 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 255 ttcggaccagttggtttggtgatggttatggttgaattaggtcgatgaattgtcgt 310 ||||||||||||||||| |||||||| ||||||||||| |||| |||||| ||||| Sbjct: 55572 ttcggaccagttggtttagtgatggtaatggttgaattgggtctatgaatagtcgt 55517 Score = 63.9 bits (32), Expect = 6e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 492 aaacttcttttgctgttcggtgggatcttcgtacaaactttaatttgtttgctctgtttc 551 ||||||||||||||| | ||||| | ||||||||||| |||||||||||| || |||||| Sbjct: 55064 aaacttcttttgctgcttggtggcaccttcgtacaaattttaatttgtttactttgtttc 55005
>emb|AL596172.1| Listeria innocua Clip11262 complete genome, segment 10/12 Length = 248050 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Plus Query: 424 tcgccttcttcaatatagggctct 447 |||||||||||||||||||||||| Sbjct: 194559 tcgccttcttcaatatagggctct 194582
>gb|BC072038.1| Xenopus laevis hypothetical protein MGC82406, mRNA (cDNA clone MGC:78886 IMAGE:4174082), complete cds Length = 3183 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 453 ctggagttggataggctgctg 473 ||||||||||||||||||||| Sbjct: 2269 ctggagttggataggctgctg 2289
>gb|BC072273.1| Xenopus laevis hypothetical protein MGC82406, mRNA (cDNA clone MGC:82406 IMAGE:4632623), complete cds Length = 3187 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 453 ctggagttggataggctgctg 473 ||||||||||||||||||||| Sbjct: 2288 ctggagttggataggctgctg 2308
>ref|XM_717198.1| Candida albicans SC5314 putative 5'-3' exoribonuclease (CaO19_12434), mRNA Length = 4410 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 599 ttgttcaacttgcttttgctt 619 ||||||||||||||||||||| Sbjct: 3774 ttgttcaacttgcttttgctt 3754
>ref|XM_717197.1| Candida albicans SC5314 hypothetical protein (CaO19_12433), mRNA Length = 438 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 599 ttgttcaacttgcttttgctt 619 ||||||||||||||||||||| Sbjct: 310 ttgttcaacttgcttttgctt 330
>ref|XM_717086.1| Candida albicans SC5314 putative 5'-3' exoribonuclease (CaO19_4969), mRNA Length = 4269 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 599 ttgttcaacttgcttttgctt 619 ||||||||||||||||||||| Sbjct: 3636 ttgttcaacttgcttttgctt 3616
>ref|XM_717085.1| Candida albicans SC5314 hypothetical protein (CaO19_4968), mRNA Length = 438 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 599 ttgttcaacttgcttttgctt 619 ||||||||||||||||||||| Sbjct: 310 ttgttcaacttgcttttgctt 330
>gb|AC099600.5| Mus musculus chromosome 15, clone RP23-236P20, complete sequence Length = 146442 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 608 ttgcttttgcttttctgtttt 628 ||||||||||||||||||||| Sbjct: 123953 ttgcttttgcttttctgtttt 123933
>emb|AL731860.8| Mouse DNA sequence from clone RP23-367H4 on chromosome 11 Contains the 5' end of the AF424697 gene for DNA sequence AF424697 (FLJ21950, KIAA0903-like) and a CpG island, complete sequence Length = 119258 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 592 acattctttgttcaacttgcttttg 616 ||||||||||||||| ||||||||| Sbjct: 97897 acattctttgttcaagttgcttttg 97873
>gb|AC104336.2| Homo sapiens chromosome 1 clone RP4-783C10, complete sequence Length = 134161 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 478 cacttcctccccagaaacttc 498 ||||||||||||||||||||| Sbjct: 9078 cacttcctccccagaaacttc 9098
>gb|AC093561.2| Homo sapiens chromosome 1 clone RP11-401A10, complete sequence Length = 184330 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 607 cttgcttttgcttttctgttt 627 ||||||||||||||||||||| Sbjct: 114086 cttgcttttgcttttctgttt 114066
>gb|L37404.1|VIBAINS Vibrio fischeri (clone pBS2.7) autoinducer synthase (ainS) gene, complete cds and sensor kinase (ainR) gene, 5' end Length = 2126 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 608 ttgcttttgcttttctgtttt 628 ||||||||||||||||||||| Sbjct: 1871 ttgcttttgcttttctgtttt 1891
>ref|NM_127957.2| Arabidopsis thaliana kinase AT2G23950 mRNA, complete cds Length = 2334 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 608 ttgcttttgcttttctgttt 627 |||||||||||||||||||| Sbjct: 208 ttgcttttgcttttctgttt 227
>gb|AC161429.2| Homo sapiens chromosome 20 clone WI2-3415J14, complete sequence Length = 41419 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 acagccttgctggctgtgat 359 |||||||||||||||||||| Sbjct: 2904 acagccttgctggctgtgat 2923
>gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0039A07 map near 50283S, complete sequence Length = 158158 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 ttcaacttgcttttgctttt 621 |||||||||||||||||||| Sbjct: 48179 ttcaacttgcttttgctttt 48160
>emb|CR759953.10| Zebrafish DNA sequence from clone DKEY-68D15 in linkage group 7, complete sequence Length = 162332 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 tacaaactttaatttgtttg 542 |||||||||||||||||||| Sbjct: 87317 tacaaactttaatttgtttg 87336
>emb|CR847832.18| Zebrafish DNA sequence from clone DKEY-30K23 in linkage group 8, complete sequence Length = 135277 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 tacaaactttaatttgtttg 542 |||||||||||||||||||| Sbjct: 11966 tacaaactttaatttgtttg 11985
>gb|AC069564.34| Mus musculus strain C57BL/6J chromosome 17 clone rp23-435n13, complete sequence Length = 185784 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 264 gttggtttggtgatggttatggtt 287 ||||||||||||||||| |||||| Sbjct: 144970 gttggtttggtgatggtcatggtt 144947
>emb|AL499627.23| Human DNA sequence from clone RP13-379O24 on chromosome 20 Contains the GATA5 gene for GATA binding protein 5 and two CpG islands, complete sequence Length = 59999 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 acagccttgctggctgtgat 359 |||||||||||||||||||| Sbjct: 52567 acagccttgctggctgtgat 52586
>ref|XM_504812.1| Yarrowia lipolytica CLIB122, YALI0F00286g predicted mRNA Length = 4329 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ctccatcctcgccttcttca 435 |||||||||||||||||||| Sbjct: 1015 ctccatcctcgccttcttca 996
>gb|AC069524.18| Homo sapiens 3 BAC RP11-181C6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161806 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 609 tgcttttgcttttctgtttt 628 |||||||||||||||||||| Sbjct: 121537 tgcttttgcttttctgtttt 121518
>gb|AC005170.3| Arabidopsis thaliana chromosome 2 clone T29E15 map CIC06C07, complete sequence Length = 108056 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 608 ttgcttttgcttttctgttt 627 |||||||||||||||||||| Sbjct: 53170 ttgcttttgcttttctgttt 53151
>gb|AC005342.1| Homo sapiens 12p13.3 PAC RPCI5-1096D14 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 220257 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tgtgctcagctggggcaact 78 |||||||||||||||||||| Sbjct: 58066 tgtgctcagctggggcaact 58047
>gb|AF283142.1|AF283142 HIV-1 isolate TZB0147 from Tanzania, envelope glycoprotein, C2-C4 region (env) gene, partial cds Length = 663 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 gtgatggttatggttgaatt 292 |||||||||||||||||||| Sbjct: 419 gtgatggttatggttgaatt 400
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 ttcaacttgcttttgctttt 621 |||||||||||||||||||| Sbjct: 14302567 ttcaacttgcttttgctttt 14302548
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 602 ttcaacttgcttttgctttt 621 |||||||||||||||||||| Sbjct: 1419660 ttcaacttgcttttgctttt 1419679
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 ttcaacttgcttttgctttt 621 |||||||||||||||||||| Sbjct: 27465705 ttcaacttgcttttgctttt 27465686
>dbj|AP004145.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0047F09 Length = 79652 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 ttcaacttgcttttgctttt 621 |||||||||||||||||||| Sbjct: 55594 ttcaacttgcttttgctttt 55575
>dbj|AP005741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470H09 Length = 141257 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 ttcaacttgcttttgctttt 621 |||||||||||||||||||| Sbjct: 66834 ttcaacttgcttttgctttt 66815
>dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1512_E04 Length = 157848 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 602 ttcaacttgcttttgctttt 621 |||||||||||||||||||| Sbjct: 37773 ttcaacttgcttttgctttt 37792
>emb|AJ006492.1|HSA006492 Homo sapiens PCCB gene, exon 6 Length = 269 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 609 tgcttttgcttttctgtttt 628 |||||||||||||||||||| Sbjct: 43 tgcttttgcttttctgtttt 62
>emb|CT025550.11| Mouse DNA sequence from clone RP23-478C2 on chromosome 17, complete sequence Length = 187385 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 264 gttggtttggtgatggttatggtt 287 ||||||||||||||||| |||||| Sbjct: 45609 gttggtttggtgatggtcatggtt 45586
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 ttcaacttgcttttgctttt 621 |||||||||||||||||||| Sbjct: 14384569 ttcaacttgcttttgctttt 14384550
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ctccatcctcgccttcttca 435 |||||||||||||||||||| Sbjct: 31845 ctccatcctcgccttcttca 31826 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,767,262 Number of Sequences: 3902068 Number of extensions: 5767262 Number of successful extensions: 118261 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117976 Number of HSP's gapped (non-prelim): 285 length of query: 628 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 605 effective length of database: 17,143,297,704 effective search space: 10371695110920 effective search space used: 10371695110920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)