ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16e22 |
|---|---|
| Clone Library Name | barley_pub |
>TRI5_FUSMI (Q8NJA1) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = +1 Query: 256 KRGRETSTSPKSFCIYIIDHXPAXVACFSCYMHTCVTWWL 375 K +ET S K D P + C+MH VTW L Sbjct: 261 KLTQETLHSSKQMVAVFADKDPQVMDTIECFMHGYVTWHL 300
>TRI5_FUSME (Q8NIC8) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = +1 Query: 256 KRGRETSTSPKSFCIYIIDHXPAXVACFSCYMHTCVTWWL 375 K +ET S K D P + C+MH VTW L Sbjct: 261 KLTQETLHSSKQMVAVFADKDPQVMDTIECFMHGYVTWHL 300
>TRI5_FUSCU (Q8NIG9) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = +1 Query: 256 KRGRETSTSPKSFCIYIIDHXPAXVACFSCYMHTCVTWWL 375 K +ET S K D P + C+MH VTW L Sbjct: 261 KLTQETLHSSKQMVAVFADKDPQVMDTIECFMHGYVTWHL 300
>TRI5_FUSCO (Q7LJF8) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = +1 Query: 256 KRGRETSTSPKSFCIYIIDHXPAXVACFSCYMHTCVTWWL 375 K +ET S K D P + C+MH VTW L Sbjct: 261 KLTQETLHSSKQMVAVFADKDPQVMDTIECFMHGYVTWHL 300
>TRI5_FUSCE (Q8NIC1) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = +1 Query: 256 KRGRETSTSPKSFCIYIIDHXPAXVACFSCYMHTCVTWWL 375 K +ET S K D P + C+MH VTW L Sbjct: 261 KLTQETLHSSKQMVAVFADKDPQVMDTIECFMHGYVTWHL 300
>TRI5_FUSBO (Q8NIH3) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = +1 Query: 256 KRGRETSTSPKSFCIYIIDHXPAXVACFSCYMHTCVTWWL 375 K +ET S K D P + C+MH VTW L Sbjct: 261 KLTQETLHSSKQMVAVFADKDPQVMDTIECFMHGYVTWHL 300
>TRI5_FUSAU (Q8NIH0) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = +1 Query: 256 KRGRETSTSPKSFCIYIIDHXPAXVACFSCYMHTCVTWWL 375 K +ET S K D P + C+MH VTW L Sbjct: 261 KLTQETLHSSKQMVAVFADKDPQVMDTIECFMHGYVTWHL 300
>TRI5_FUSAS (Q8NIH6) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = +1 Query: 256 KRGRETSTSPKSFCIYIIDHXPAXVACFSCYMHTCVTWWL 375 K +ET S K D P + C+MH VTW L Sbjct: 261 KLTQETLHSSKQMVAVFADKDPQVMDTIECFMHGYVTWHL 300
>OPSD_LIMBE (O42427) Rhodopsin (Fragment)| Length = 289 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Frame = +1 Query: 223 LSCAQRSATRRKRGRETSTSP-KSFCIYIIDHXPAXVACFSCYMHTCVTWWLMTKLESGS 399 L CA + A ++ ET+ P K ++ A + C C + V WW+ S Sbjct: 197 LLCAVKEAAAAQQESETTQRPEKEVTRMVVIMVIAFLVC--CLPNASVAWWIFCNQGSDF 254 Query: 400 KSXLITFPLYYYK 438 +T P ++ K Sbjct: 255 GPIFMTLPSFFAK 267 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,380,436 Number of Sequences: 219361 Number of extensions: 979549 Number of successful extensions: 1920 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1893 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1920 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
