ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16e21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1U171_DROME (Q9VUB4) Hypothetical UPF0171 protein CG8783 29 9.8

>U171_DROME (Q9VUB4) Hypothetical UPF0171 protein CG8783|
          Length = 610

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 335 VWLISY-LLVVVQNQVGMLQT-DELNQNFSLKHQAGQKVPSEVTDH-PKFEFLHGDMVRI 505
           +W++ + LL+ +   V  + + DE   + S  +     +  E  D  P  + LHG M+ +
Sbjct: 398 IWMLQHHLLMQLHTYVQFMPSEDEFGDSASCSNHLRDAISDEEGDQEPDADELHGSMLSM 457

Query: 506 LHHPYLTPTLLADHKKR 556
             HP   P +L    +R
Sbjct: 458 SSHPLPVPAVLVGGHRR 474


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,411,780
Number of Sequences: 219361
Number of extensions: 1872732
Number of successful extensions: 4349
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4346
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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