ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16e21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472941.1| Oryza sativa (japonica cultivar-group), predic... 149 1e-32
2dbj|AK069013.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
3dbj|AK061463.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
4gb|AY105954.1| Zea mays PCO090799 mRNA sequence 107 4e-20
5emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4,... 92 3e-15
6emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4,... 92 3e-15
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
8emb|AL442114.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 92 3e-15
9gb|AC156027.2| Mus musculus BAC clone RP23-55O17 from chromosome... 46 0.14
10gb|AY572781.1| Arabidopsis thaliana CDC48-interacting UBX-domain... 44 0.54
11ref|NM_113645.2| Arabidopsis thaliana PUX1 (PLANT UBX DOMAIN-CON... 44 0.54
12gb|BT024476.1| Arabidopsis thaliana At3g27310 mRNA, complete cds 44 0.54
13dbj|AK175284.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 44 0.54
14dbj|AP000381.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 44 0.54
15gb|AC130697.10| Mus musculus chromosome 15, clone RP24-121O7, co... 42 2.1
16gb|AC096668.1| Homo sapiens BAC clone RP11-379A23 from 2, comple... 42 2.1
17gb|AC158921.17| Mus musculus chromosome 15, clone RP23-120K5, co... 42 2.1
18gb|AC156164.2| Mus musculus BAC clone RP24-75M13 from chromosome... 40 8.5
19gb|AC164179.7| Mus musculus 10 BAC RP24-63J23 (Roswell Park Canc... 40 8.5
20emb|BX927368.13| Zebrafish DNA sequence from clone CH211-15J16 i... 40 8.5
21gb|AC102441.6| Mus musculus chromosome 18, clone RP24-160I12, co... 40 8.5
22emb|AL590668.5| Human DNA sequence from clone RP11-463L20 on chr... 40 8.5
23emb|AL162590.15| Human DNA sequence from clone RP11-54K16 on chr... 40 8.5
24emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4,... 40 8.5
25gb|AC027673.9| Homo sapiens chromosome 10 clone RP11-20E23, comp... 40 8.5
26emb|BX323601.6| Zebrafish DNA sequence from clone RP71-14P11, co... 40 8.5
27dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
28emb|BX649448.10| Zebrafish DNA sequence from clone DKEY-169I5 in... 40 8.5
29gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) ch... 40 8.5
30gb|AC151737.3| Pan troglodytes BAC clone RP43-70B8 from chromoso... 40 8.5
31gb|AC009405.3|AC009405 Homo sapiens BAC clone RP11-175M21 from 2... 40 8.5
32gb|AC006145.2|AC006145 Homo sapiens PAC clone RP4-560O14 from 7q... 40 8.5
33emb|AL732515.15| Zebrafish DNA sequence from clone RP71-1K13 in ... 40 8.5
34emb|BX005009.11| Zebrafish DNA sequence from clone CH211-15A18 i... 40 8.5
35gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
36gb|AC011389.7| Homo sapiens chromosome 5 clone CTB-174D11, compl... 40 8.5 
>ref|XM_472941.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 927

 Score =  149 bits (75), Expect = 1e-32
 Identities = 129/147 (87%)
 Strand = Plus / Minus

                                                                       
Query: 475 cgaatttcttcacggagatatggtccggattttacaccatccgtatttaactccgaccct 534
           |||||||||||||||||||| ||||| ||||||||||  || ||||||||||| || |||
Sbjct: 770 cgaatttcttcacggagataaggtcctgattttacactgtctgtatttaactctgagcct 711

                                                                       
Query: 535 tctggcagatcataagaaaagaagacattagctccaggaacaaagccaattgtgtagaag 594
           || |||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||| 
Sbjct: 710 tccggcagatcataagagaagtagacattagccccaggaacaaaaccaattgtgtagaaa 651

                                      
Query: 595 tcctgtgaggtgtccattattcgcttc 621
           ||| |||| |||||  |||| ||||||
Sbjct: 650 tccagtgaagtgtcttttatccgcttc 624



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 315 tcaccttttgaaccacttcggtttggctgatttcttatttgctggtggtg 364
           |||||||||||||||||| ||||| |||| |||||| |||||||| ||||
Sbjct: 927 tcaccttttgaaccactttggtttagctggtttcttgtttgctggcggtg 878
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>dbj|AK069013.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001P21, full
           insert sequence
          Length = 1262

 Score =  149 bits (75), Expect = 1e-32
 Identities = 129/147 (87%)
 Strand = Plus / Minus

                                                                       
Query: 475 cgaatttcttcacggagatatggtccggattttacaccatccgtatttaactccgaccct 534
           |||||||||||||||||||| ||||| ||||||||||  || ||||||||||| || |||
Sbjct: 741 cgaatttcttcacggagataaggtcctgattttacactgtctgtatttaactctgagcct 682

                                                                       
Query: 535 tctggcagatcataagaaaagaagacattagctccaggaacaaagccaattgtgtagaag 594
           || |||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||| 
Sbjct: 681 tccggcagatcataagagaagtagacattagccccaggaacaaaaccaattgtgtagaaa 622

                                      
Query: 595 tcctgtgaggtgtccattattcgcttc 621
           ||| |||| |||||  |||| ||||||
Sbjct: 621 tccagtgaagtgtcttttatccgcttc 595



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 315 tcaccttttgaaccacttcggtttggctgatttcttatttgctggtggtg 364
           |||||||||||||||||| ||||| |||| |||||| |||||||| ||||
Sbjct: 898 tcaccttttgaaccactttggtttagctggtttcttgtttgctggcggtg 849
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>dbj|AK061463.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-B12, full
           insert sequence
          Length = 1130

 Score =  149 bits (75), Expect = 1e-32
 Identities = 129/147 (87%)
 Strand = Plus / Minus

                                                                       
Query: 475 cgaatttcttcacggagatatggtccggattttacaccatccgtatttaactccgaccct 534
           |||||||||||||||||||| ||||| ||||||||||  || ||||||||||| || |||
Sbjct: 727 cgaatttcttcacggagataaggtcctgattttacactgtctgtatttaactctgagcct 668

                                                                       
Query: 535 tctggcagatcataagaaaagaagacattagctccaggaacaaagccaattgtgtagaag 594
           || |||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||| 
Sbjct: 667 tccggcagatcataagagaagtagacattagccccaggaacaaaaccaattgtgtagaaa 608

                                      
Query: 595 tcctgtgaggtgtccattattcgcttc 621
           ||| |||| |||||  |||| ||||||
Sbjct: 607 tccagtgaagtgtcttttatccgcttc 581



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 315 tcaccttttgaaccacttcggtttggctgatttcttatttgctggtggtg 364
           |||||||||||||||||| ||||| |||| |||||| |||||||| ||||
Sbjct: 884 tcaccttttgaaccactttggtttagctggtttcttgtttgctggcggtg 835
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>gb|AY105954.1| Zea mays PCO090799 mRNA sequence
          Length = 973

 Score =  107 bits (54), Expect = 4e-20
 Identities = 141/170 (82%)
 Strand = Plus / Minus

                                                                       
Query: 452 gaagtgacagaccatccaaagttcgaatttcttcacggagatatggtccggattttacac 511
           |||||||||  ||||||||| || ||||| ||||||||||  | ||||| | ||||| | 
Sbjct: 723 gaagtgacaatccatccaaacttagaattccttcacggaggaagggtcctgcttttagat 664

                                                                       
Query: 512 catccgtatttaactccgacccttctggcagatcataagaaaagaagacattagctccag 571
           |||| | |||||||  | | ||||| |||||||||||||||||    |||||||||||||
Sbjct: 663 catctgcatttaacaacaaaccttcgggcagatcataagaaaaatgaacattagctccag 604

                                                             
Query: 572 gaacaaagccaattgtgtagaagtcctgtgaggtgtccattattcgcttc 621
           ||||||| |||  ||| |||||||||||||| ||||||| ||||||||||
Sbjct: 603 gaacaaaaccagatgtatagaagtcctgtgatgtgtccagtattcgcttc 554
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>emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09,
             complete sequence
          Length = 120583

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 79/90 (87%)
 Strand = Plus / Minus

                                                                         
Query: 532   ccttctggcagatcataagaaaagaagacattagctccaggaacaaagccaattgtgtag 591
             ||||| |||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||
Sbjct: 53787 ccttccggcagatcataagagaagtagacattagccccaggaacaaaaccaattgtgtag 53728

                                           
Query: 592   aagtcctgtgaggtgtccattattcgcttc 621
             || ||| |||| |||||  |||| ||||||
Sbjct: 53727 aaatccagtgaagtgtcttttatccgcttc 53698



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 475   cgaatttcttcacggagatatggtccggattttacaccatccgtatttaactc 527
             |||||||||||||||||||| ||||| ||||||||||  || |||||||||||
Sbjct: 53948 cgaatttcttcacggagataaggtcctgattttacactgtctgtatttaactc 53896



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 317   accttttgaaccacttcggtttggctgatttcttatttgctggtggtg 364
             |||||||||||||||| ||||| |||| |||||| |||||||| ||||
Sbjct: 54103 accttttgaaccactttggtttagctggtttcttgtttgctggcggtg 54056
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>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15,
              complete sequence
          Length = 150864

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 79/90 (87%)
 Strand = Plus / Minus

                                                                          
Query: 532    ccttctggcagatcataagaaaagaagacattagctccaggaacaaagccaattgtgtag 591
              ||||| |||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||
Sbjct: 120600 ccttccggcagatcataagagaagtagacattagccccaggaacaaaaccaattgtgtag 120541

                                            
Query: 592    aagtcctgtgaggtgtccattattcgcttc 621
              || ||| |||| |||||  |||| ||||||
Sbjct: 120540 aaatccagtgaagtgtcttttatccgcttc 120511



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                   
Query: 475    cgaatttcttcacggagatatggtccggattttacaccatccgtatttaactc 527
              |||||||||||||||||||| ||||| ||||||||||  || |||||||||||
Sbjct: 120761 cgaatttcttcacggagataaggtcctgattttacactgtctgtatttaactc 120709



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                              
Query: 317    accttttgaaccacttcggtttggctgatttcttatttgctggtggtg 364
              |||||||||||||||| ||||| |||| |||||| |||||||| ||||
Sbjct: 120916 accttttgaaccactttggtttagctggtttcttgtttgctggcggtg 120869
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 79/90 (87%)
 Strand = Plus / Minus

                                                                            
Query: 532      ccttctggcagatcataagaaaagaagacattagctccaggaacaaagccaattgtgtag 591
                ||||| |||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||
Sbjct: 24231375 ccttccggcagatcataagagaagtagacattagccccaggaacaaaaccaattgtgtag 24231316

                                              
Query: 592      aagtcctgtgaggtgtccattattcgcttc 621
                || ||| |||| |||||  |||| ||||||
Sbjct: 24231315 aaatccagtgaagtgtcttttatccgcttc 24231286



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 475      cgaatttcttcacggagatatggtccggattttacaccatccgtatttaactc 527
                |||||||||||||||||||| ||||| ||||||||||  || |||||||||||
Sbjct: 24231536 cgaatttcttcacggagataaggtcctgattttacactgtctgtatttaactc 24231484



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 317      accttttgaaccacttcggtttggctgatttcttatttgctggtggtg 364
                |||||||||||||||| ||||| |||| |||||| |||||||| ||||
Sbjct: 24231691 accttttgaaccactttggtttagctggtttcttgtttgctggcggtg 24231644



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 20       tcatttcctccgtttctatg 39
                ||||||||||||||||||||
Sbjct: 31130815 tcatttcctccgtttctatg 31130834
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>emb|AL442114.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811E11, complete
             sequence
          Length = 59348

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 79/90 (87%)
 Strand = Plus / Minus

                                                                         
Query: 532   ccttctggcagatcataagaaaagaagacattagctccaggaacaaagccaattgtgtag 591
             ||||| |||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||
Sbjct: 26091 ccttccggcagatcataagagaagtagacattagccccaggaacaaaaccaattgtgtag 26032

                                           
Query: 592   aagtcctgtgaggtgtccattattcgcttc 621
             || ||| |||| |||||  |||| ||||||
Sbjct: 26031 aaatccagtgaagtgtcttttatccgcttc 26002



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 475   cgaatttcttcacggagatatggtccggattttacaccatccgtatttaactc 527
             |||||||||||||||||||| ||||| ||||||||||  || |||||||||||
Sbjct: 26252 cgaatttcttcacggagataaggtcctgattttacactgtctgtatttaactc 26200



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 317   accttttgaaccacttcggtttggctgatttcttatttgctggtggtg 364
             |||||||||||||||| ||||| |||| |||||| |||||||| ||||
Sbjct: 26407 accttttgaaccactttggtttagctggtttcttgtttgctggcggtg 26360
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>gb|AC156027.2| Mus musculus BAC clone RP23-55O17 from chromosome 17, complete sequence
          Length = 214723

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 357    tggtggtggtgcagaatcaggtc 379
              |||||||||||||||||||||||
Sbjct: 192512 tggtggtggtgcagaatcaggtc 192534
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>gb|AY572781.1| Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX1)
           mRNA, complete cds
          Length = 756

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                 
Query: 550 gaaaagaagacattagctccaggaacaaagccaattgtgtagaagtcctgtgag 603
           |||||| ||||| | |||||||||||||| |||  || ||||||||| ||||||
Sbjct: 542 gaaaagtagacaatggctccaggaacaaacccagctgagtagaagtcttgtgag 489
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>ref|NM_113645.2| Arabidopsis thaliana PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)
           AT3G27310 (PUX1) mRNA, complete cds
          Length = 939

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                 
Query: 550 gaaaagaagacattagctccaggaacaaagccaattgtgtagaagtcctgtgag 603
           |||||| ||||| | |||||||||||||| |||  || ||||||||| ||||||
Sbjct: 566 gaaaagtagacaatggctccaggaacaaacccagctgagtagaagtcttgtgag 513
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>gb|BT024476.1| Arabidopsis thaliana At3g27310 mRNA, complete cds
          Length = 756

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                 
Query: 550 gaaaagaagacattagctccaggaacaaagccaattgtgtagaagtcctgtgag 603
           |||||| ||||| | |||||||||||||| |||  || ||||||||| ||||||
Sbjct: 542 gaaaagtagacaatggctccaggaacaaacccagctgagtagaagtcttgtgag 489
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>dbj|AK175284.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-72-C22
          Length = 934

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                 
Query: 550 gaaaagaagacattagctccaggaacaaagccaattgtgtagaagtcctgtgag 603
           |||||| ||||| | |||||||||||||| |||  || ||||||||| ||||||
Sbjct: 554 gaaaagtagacaatggctccaggaacaaacccagctgagtagaagtcttgtgag 501
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>dbj|AP000381.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K17E12
          Length = 63604

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                   
Query: 550   gaaaagaagacattagctccaggaacaaagccaattgtgtagaagtcctgtgag 603
             |||||| ||||| | |||||||||||||| |||  || ||||||||| ||||||
Sbjct: 51777 gaaaagtagacaatggctccaggaacaaacccagctgagtagaagtcttgtgag 51830
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>gb|AC130697.10| Mus musculus chromosome 15, clone RP24-121O7, complete sequence
          Length = 152112

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 346   ttcttatttgctggtggtggt 366
             |||||||||||||||||||||
Sbjct: 50500 ttcttatttgctggtggtggt 50480
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>gb|AC096668.1| Homo sapiens BAC clone RP11-379A23 from 2, complete sequence
          Length = 75970

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 340   gctgatttcttatttgctggt 360
             |||||||||||||||||||||
Sbjct: 21346 gctgatttcttatttgctggt 21366
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>gb|AC158921.17| Mus musculus chromosome 15, clone RP23-120K5, complete sequence
          Length = 218949

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 346   ttcttatttgctggtggtggt 366
             |||||||||||||||||||||
Sbjct: 45530 ttcttatttgctggtggtggt 45550
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>gb|AC156164.2| Mus musculus BAC clone RP24-75M13 from chromosome 9, complete sequence
          Length = 183015

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 544    tcataagaaaagaagacatt 563
              ||||||||||||||||||||
Sbjct: 141720 tcataagaaaagaagacatt 141701
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>gb|AC164179.7| Mus musculus 10 BAC RP24-63J23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 209011

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 31     gtttctatgcggccttttacacat 54
              |||||||||| |||||||||||||
Sbjct: 121196 gtttctatgcagccttttacacat 121173
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>emb|BX927368.13| Zebrafish DNA sequence from clone CH211-15J16 in linkage group 23,
              complete sequence
          Length = 176438

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    ttcagactgatgagctgaat 406
              ||||||||||||||||||||
Sbjct: 175946 ttcagactgatgagctgaat 175927
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>gb|AC102441.6| Mus musculus chromosome 18, clone RP24-160I12, complete sequence
          Length = 224556

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   aactcctatgtaacacagga 175
             ||||||||||||||||||||
Sbjct: 43901 aactcctatgtaacacagga 43882
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>emb|AL590668.5| Human DNA sequence from clone RP11-463L20 on chromosome 6 Contains the
             MUT gene for methylmalonyl Coenzyme A mutase snd the 5'
             end of a novel gene, complete sequence
          Length = 67410

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 548   aagaaaagaagacattagct 567
             ||||||||||||||||||||
Sbjct: 48497 aagaaaagaagacattagct 48478
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>emb|AL162590.15| Human DNA sequence from clone RP11-54K16 on chromosome 9p13.3-21.1
             Contains a cancer/testis antigen 1 (CTAG1) (LAGE2B)
             pseudogene, the DNAJA1 gene for DnaJ (Hsp40) homolog,
             subfamily A, member 1, the gene for homolog of C. elegans
             smu-1 (SMU-1) (FLJ10805), the 5' end of the  APTX gene for
             aprataxin and 3 CpG islands, complete sequence
          Length = 98271

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 538   ggcagatcataagaaaagaa 557
             ||||||||||||||||||||
Sbjct: 10694 ggcagatcataagaaaagaa 10713
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>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
              complete sequence
          Length = 160484

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     tcatttcctccgtttctatg 39
              ||||||||||||||||||||
Sbjct: 112896 tcatttcctccgtttctatg 112915
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>gb|AC027673.9| Homo sapiens chromosome 10 clone RP11-20E23, complete sequence
          Length = 169552

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 400   gctgaatcagaatttctctttgaa 423
             ||||||||||||||||| ||||||
Sbjct: 31186 gctgaatcagaatttctttttgaa 31163
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>emb|BX323601.6| Zebrafish DNA sequence from clone RP71-14P11, complete sequence
          Length = 207067

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   tctgaagtcgttgaaccatg 224
             ||||||||||||||||||||
Sbjct: 88849 tctgaagtcgttgaaccatg 88830
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 77       acacccacaaagcagtttga 96
                ||||||||||||||||||||
Sbjct: 14402076 acacccacaaagcagtttga 14402057
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>emb|BX649448.10| Zebrafish DNA sequence from clone DKEY-169I5 in linkage group 22,
             complete sequence
          Length = 184512

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    acacccaaatttacatgcta 115
             ||||||||||||||||||||
Sbjct: 10165 acacccaaatttacatgcta 10146
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>gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0075H14,
             complete sequence
          Length = 155420

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    acacccacaaagcagtttga 96
             ||||||||||||||||||||
Sbjct: 16439 acacccacaaagcagtttga 16420
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>gb|AC151737.3| Pan troglodytes BAC clone RP43-70B8 from chromosome 7, complete sequence
          Length = 212458

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 410    aatttctctttgaaacatca 429
              ||||||||||||||||||||
Sbjct: 175271 aatttctctttgaaacatca 175252
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>gb|AC009405.3|AC009405 Homo sapiens BAC clone RP11-175M21 from 2, complete sequence
          Length = 186323

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 400   gctgaatcagaatttctctttgaa 423
             ||||||||||||||||| ||||||
Sbjct: 98447 gctgaatcagaatttctttttgaa 98424
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>gb|AC006145.2|AC006145 Homo sapiens PAC clone RP4-560O14 from 7q21.1-q21.2, complete sequence
          Length = 144659

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 410   aatttctctttgaaacatca 429
             ||||||||||||||||||||
Sbjct: 29919 aatttctctttgaaacatca 29938
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>emb|AL732515.15| Zebrafish DNA sequence from clone RP71-1K13 in linkage group 23,
             complete sequence
          Length = 154426

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   ttcagactgatgagctgaat 406
             ||||||||||||||||||||
Sbjct: 51425 ttcagactgatgagctgaat 51406
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>emb|BX005009.11| Zebrafish DNA sequence from clone CH211-15A18 in linkage group 22,
              complete sequence
          Length = 186690

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     acacccaaatttacatgcta 115
              ||||||||||||||||||||
Sbjct: 144172 acacccaaatttacatgcta 144153
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 77       acacccacaaagcagtttga 96
                ||||||||||||||||||||
Sbjct: 14410318 acacccacaaagcagtttga 14410299
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>gb|AC011389.7| Homo sapiens chromosome 5 clone CTB-174D11, complete sequence
          Length = 231746

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    aaccatgaaatatgatcaat 237
              ||||||||||||||||||||
Sbjct: 178590 aaccatgaaatatgatcaat 178571


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,537,110
Number of Sequences: 3902068
Number of extensions: 5537110
Number of successful extensions: 97792
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97592
Number of HSP's gapped (non-prelim): 199
length of query: 621
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 598
effective length of database: 17,143,297,704
effective search space: 10251692026992
effective search space used: 10251692026992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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