ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15p14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA 377 e-101
2emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene 363 2e-97
3dbj|AK121585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 3e-28
4dbj|AK119679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 3e-28
5dbj|AK099446.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 3e-28
6gb|AF012897.1|AF012897 Oryza sativa HvB12D homolog mRNA, complet... 133 3e-28
7gb|BT016635.1| Zea mays clone Contig468 mRNA sequence 127 2e-26
8gb|AF466286.1| Oryza sativa putative G-box binding protein mRNA,... 125 7e-26
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 125 7e-26
10dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 125 7e-26
11gb|AY104072.1| Zea mays PCO110104 mRNA sequence 86 6e-14
12gb|DQ226813.1| Boechera divaricarpa isolate SLW-B-F11 mRNA sequence 50 0.003
13gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome... 46 0.052
14gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, c... 44 0.20
15gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, com... 44 0.20
16ref|NM_114683.3| Arabidopsis thaliana unknown protein AT3G48140 ... 42 0.81
17gb|AC006396.1| Homo sapiens PAC clone RP4-733H1 from 7, complete... 42 0.81
18emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, B... 42 0.81
19gb|AY081326.1| Arabidopsis thaliana B12D-like protein (At3g48140... 42 0.81
20gb|AC152070.4| Pan troglodytes BAC clone RP43-135N21 from chromo... 42 0.81
21emb|BX826078.1|CNS0A53J Arabidopsis thaliana Full-length cDNA Co... 42 0.81
22emb|BX841563.1|CNS09YFD Arabidopsis thaliana Full-length cDNA Co... 42 0.81
23gb|BT001183.1| Arabidopsis thaliana B12D-like protein (At3g48140... 42 0.81
24emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chro... 42 0.81
25gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 3.2
26gb|AF099921.1| Caenorhabditis elegans cosmid M01E10, complete se... 40 3.2
27ref|XM_676154.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 3.2
28emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 40 3.2
29emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 3.2
30gb|AC009238.4| Homo sapiens BAC clone RP11-468G5 from 2, complet... 40 3.2
31gb|AF111796.1|AF111796 Bordetella bronchiseptica strain GP1 adhe... 40 3.2 
>emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA
          Length = 502

 Score =  377 bits (190), Expect = e-101
 Identities = 223/231 (96%), Gaps = 3/231 (1%)
 Strand = Plus / Minus

                                                                       
Query: 15  cttgaaataggttaagcacttgaccacaacagtttctaatagnnagtcacagnacagnac 74
           |||||||||||||  ||||||||||||||||||| |||||||  |||||||| |||| ||
Sbjct: 390 cttgaaataggttt-gcacttgaccacaacagttgctaatagcgagtcacag-acag-ac 334

                                                                       
Query: 75  agtctaaagngcttcatttcgggctggtgaagaacttgttgattcctggcatgatctcgg 134
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agtctaaagtgcttcatttcgggctggtgaagaacttgttgattcctggcatgatctcgg 274

                                                                       
Query: 135 gggtcttgtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctgccctcctcat 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gggtcttgtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctgccctcctcat 214

                                                              
Query: 195 ggttctcaagcactcctgctgccctccccatcttgctgaccctgacttctg 245
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ggttctcaagcactcctgctgccctccccatcttgctgaccctgacttctg 163
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>emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene
          Length = 1931

 Score =  363 bits (183), Expect = 2e-97
 Identities = 216/224 (96%), Gaps = 3/224 (1%)
 Strand = Plus / Minus

                                                                        
Query: 15   cttgaaataggttaagcacttgaccacaacagtttctaatagnnagtcacagnacagnac 74
            |||||||||||||  ||||||||||||||||||| |||||||  |||||||| |||| ||
Sbjct: 1532 cttgaaataggttt-gcacttgaccacaacagttgctaatagcgagtcacag-acag-ac 1476

                                                                        
Query: 75   agtctaaagngcttcatttcgggctggtgaagaacttgttgattcctggcatgatctcgg 134
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1475 agtctaaagtgcttcatttcgggctggtgaagaacttgttgattcctggcatgatctcgg 1416

                                                                        
Query: 135  gggtcttgtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctgccctcctcat 194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 gggtcttgtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctgccctcctcat 1356

                                                        
Query: 195  ggttctcaagcactcctgctgccctccccatcttgctgaccctg 238
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355 ggttctcaagcactcctgctgccctccccatcttgctgaccctg 1312
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>dbj|AK121585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037I06, full
           insert sequence
          Length = 576

 Score =  133 bits (67), Expect = 3e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                       
Query: 101 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 160
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 328 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 269

                                                                       
Query: 161 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 220
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 268 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 209

                                  
Query: 221 cccatcttgctgaccctgacttc 243
           || | |||| | |||||||||||
Sbjct: 208 cctaccttgttaaccctgacttc 186
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>dbj|AK119679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-H09, full
           insert sequence
          Length = 552

 Score =  133 bits (67), Expect = 3e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                       
Query: 101 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 160
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 325 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 266

                                                                       
Query: 161 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 220
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 265 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 206

                                  
Query: 221 cccatcttgctgaccctgacttc 243
           || | |||| | |||||||||||
Sbjct: 205 cctaccttgttaaccctgacttc 183
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>dbj|AK099446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021L07, full
           insert sequence
          Length = 518

 Score =  133 bits (67), Expect = 3e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                       
Query: 101 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 160
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 322 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 263

                                                                       
Query: 161 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 220
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 262 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 203

                                  
Query: 221 cccatcttgctgaccctgacttc 243
           || | |||| | |||||||||||
Sbjct: 202 cctaccttgttaaccctgacttc 180
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>gb|AF012897.1|AF012897 Oryza sativa HvB12D homolog mRNA, complete cds
          Length = 545

 Score =  133 bits (67), Expect = 3e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                       
Query: 101 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 160
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 294 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 235

                                                                       
Query: 161 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 220
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 234 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 175

                                  
Query: 221 cccatcttgctgaccctgacttc 243
           || | |||| | |||||||||||
Sbjct: 174 cctaccttgttaaccctgacttc 152
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>gb|BT016635.1| Zea mays clone Contig468 mRNA sequence
          Length = 792

 Score =  127 bits (64), Expect = 2e-26
 Identities = 121/140 (86%)
 Strand = Plus / Minus

                                                                       
Query: 104 aagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctgagg 163
           ||||||||||||||  ||||||||||||||||||||||||| |||||  ||  |||||||
Sbjct: 483 aagaacttgttgatagctggcatgatctcgggggtcttgtcgtgcacaaagcttctgagg 424

                                                                       
Query: 164 ccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctcccc 223
           || |||  |||||| ||||| ||||||||||||||||||||||| || ||||||||||| 
Sbjct: 423 ccatgcatggcgtaacgcctcccctcctcatggttctcaagcacgccggctgccctccct 364

                               
Query: 224 atcttgctgaccctgacttc 243
             |||| | |||||||||||
Sbjct: 363 gccttgtttaccctgacttc 344
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>gb|AF466286.1| Oryza sativa putative G-box binding protein mRNA, complete cds
          Length = 510

 Score =  125 bits (63), Expect = 7e-26
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                       
Query: 101 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 160
           ||||| |||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 265 gtgaaaaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 206

                                                                       
Query: 161 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 220
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 205 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 146

                                  
Query: 221 cccatcttgctgaccctgacttc 243
           || | |||| | |||||||||||
Sbjct: 145 cctaccttgttaaccctgacttc 123
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  125 bits (63), Expect = 7e-26
 Identities = 120/139 (86%)
 Strand = Plus / Plus

                                                                           
Query: 101     gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 160
               |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 7602745 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 7602804

                                                                           
Query: 161     aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 220
               || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 7602805 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 7602864

                                  
Query: 221     cccatcttgctgaccctga 239
               || | |||| | |||||||
Sbjct: 7602865 cctaccttgttaaccctga 7602883
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>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1136_C11
          Length = 124827

 Score =  125 bits (63), Expect = 7e-26
 Identities = 120/139 (86%)
 Strand = Plus / Plus

                                                                         
Query: 101   gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 160
             |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 26000 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 26059

                                                                         
Query: 161   aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 220
             || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 26060 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 26119

                                
Query: 221   cccatcttgctgaccctga 239
             || | |||| | |||||||
Sbjct: 26120 cctaccttgttaaccctga 26138
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>gb|AY104072.1| Zea mays PCO110104 mRNA sequence
          Length = 727

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 118/143 (82%)
 Strand = Plus / Minus

                                                                       
Query: 101 gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 160
           |||||||||||||| | | | ||||||||||| || |||||||| |||||  ||  ||| 
Sbjct: 359 gtgaagaacttgttaactgcaggcatgatctcaggagtcttgtcgtgcacaaagcttctt 300

                                                                       
Query: 161 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 220
           ||||| |||  |||||| || || ||||||||||||||||||||||| || |||||||||
Sbjct: 299 aggccatgcatggcgtaacgtctcccctcctcatggttctcaagcacaccagctgccctc 240

                                  
Query: 221 cccatcttgctgaccctgacttc 243
           ||   |||| | |||||||||||
Sbjct: 239 cctgccttgtttaccctgacttc 217
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>gb|DQ226813.1| Boechera divaricarpa isolate SLW-B-F11 mRNA sequence
          Length = 567

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 101 gtgaagaacttgttgattcctggcatgat 129
           |||||||||||||||||||| ||||||||
Sbjct: 310 gtgaagaacttgttgattccaggcatgat 282
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>gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome 12, complete sequence
          Length = 183707

 Score = 46.1 bits (23), Expect = 0.052
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 107   aacttgttgattcctggcatgat 129
             |||||||||||||||||||||||
Sbjct: 15085 aacttgttgattcctggcatgat 15107
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>gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, complete sequence
          Length = 168677

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 182   ctgccctcctcatggttctcaagcac 207
             |||||||||||||||||| |||||||
Sbjct: 39836 ctgccctcctcatggttcacaagcac 39861
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>gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, complete sequence
          Length = 156701

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 182   ctgccctcctcatggttctcaagcac 207
             |||||||||||||||||| |||||||
Sbjct: 10630 ctgccctcctcatggttcacaagcac 10605
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>ref|NM_114683.3| Arabidopsis thaliana unknown protein AT3G48140 mRNA, complete cds
          Length = 588

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 101 gtgaagaacttgttgattcctggcatgat 129
           |||||||||||||||| ||| ||||||||
Sbjct: 322 gtgaagaacttgttgagtccaggcatgat 294
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>gb|AC006396.1| Homo sapiens PAC clone RP4-733H1 from 7, complete sequence
          Length = 81854

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 208   tcctgctgccctccccatctt 228
             |||||||||||||||||||||
Sbjct: 46605 tcctgctgccctccccatctt 46585
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>emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, BAC clone T24C20
          Length = 103889

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 101   gtgaagaacttgttgattcctggcatgat 129
             |||||||||||||||| ||| ||||||||
Sbjct: 12996 gtgaagaacttgttgagtccaggcatgat 12968
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>gb|AY081326.1| Arabidopsis thaliana B12D-like protein (At3g48140) mRNA, complete
           cds
          Length = 558

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 101 gtgaagaacttgttgattcctggcatgat 129
           |||||||||||||||| ||| ||||||||
Sbjct: 322 gtgaagaacttgttgagtccaggcatgat 294
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>gb|AC152070.4| Pan troglodytes BAC clone RP43-135N21 from chromosome 7, complete
            sequence
          Length = 162075

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 208  tcctgctgccctccccatctt 228
            |||||||||||||||||||||
Sbjct: 3856 tcctgctgccctccccatctt 3876
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>emb|BX826078.1|CNS0A53J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZE04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 551

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 101 gtgaagaacttgttgattcctggcatgat 129
           |||||||||||||||| ||| ||||||||
Sbjct: 304 gtgaagaacttgttgagtccaggcatgat 276
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>emb|BX841563.1|CNS09YFD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH57ZC05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 515

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 101 gtgaagaacttgttgattcctggcatgat 129
           |||||||||||||||| ||| ||||||||
Sbjct: 212 gtgaagaacttgttgagtccaggcatgat 240
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>gb|BT001183.1| Arabidopsis thaliana B12D-like protein (At3g48140) mRNA, complete
           cds
          Length = 350

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 101 gtgaagaacttgttgattcctggcatgat 129
           |||||||||||||||| ||| ||||||||
Sbjct: 251 gtgaagaacttgttgagtccaggcatgat 223
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>emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chromosome 4, complete
              sequence
          Length = 182774

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 225    tcttgctgaccctgacttctg 245
              |||||||||||||||||||||
Sbjct: 130420 tcttgctgaccctgacttctg 130400
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 30      gcacttgaccacaacagttt 49
               ||||||||||||||||||||
Sbjct: 1954948 gcacttgaccacaacagttt 1954929
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>gb|AF099921.1| Caenorhabditis elegans cosmid M01E10, complete sequence
          Length = 39974

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   agcactcctgctgccctccc 222
             ||||||||||||||||||||
Sbjct: 18360 agcactcctgctgccctccc 18341
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>ref|XM_676154.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7977.2), mRNA
          Length = 921

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 197 ttctcaagcactcctgctgc 216
           ||||||||||||||||||||
Sbjct: 917 ttctcaagcactcctgctgc 898
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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   gccgtgctcggcgtagcgcc 182
             ||||||||||||||||||||
Sbjct: 58257 gccgtgctcggcgtagcgcc 58276
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   gccgtgctcggcgtagcgcc 182
             ||||||||||||||||||||
Sbjct: 21961 gccgtgctcggcgtagcgcc 21942
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>gb|AC009238.4| Homo sapiens BAC clone RP11-468G5 from 2, complete sequence
          Length = 202361

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 209    cctgctgccctccccatcttgctg 232
              |||||||||||||||| |||||||
Sbjct: 117817 cctgctgccctccccaccttgctg 117794
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>gb|AF111796.1|AF111796 Bordetella bronchiseptica strain GP1 adhesin (fhaB) and putative
            major fimbrial structural subunit (fimA) genes, complete
            cds
          Length = 12256

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 163  gccgtgctcggcgtagcgcc 182
            ||||||||||||||||||||
Sbjct: 4564 gccgtgctcggcgtagcgcc 4545


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,666,309
Number of Sequences: 3902068
Number of extensions: 1666309
Number of successful extensions: 60292
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60239
Number of HSP's gapped (non-prelim): 51
length of query: 248
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 226
effective length of database: 17,147,199,772
effective search space: 3875267148472
effective search space used: 3875267148472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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