ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16e20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ARNT2_MOUSE (Q61324) Aryl hydrocarbon receptor nuclear transloca... 32 2.4
2ARNT2_HUMAN (Q9HBZ2) Aryl hydrocarbon receptor nuclear transloca... 32 2.4
3WCAC_ECOLI (P71237) Putative colanic acid biosynthesis glycosyl ... 30 7.0

>ARNT2_MOUSE (Q61324) Aryl hydrocarbon receptor nuclear translocator 2 (ARNT|
           protein 2)
          Length = 712

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 446 WKAQAHGQMHSFEHAPSDPSRTEMFQ 523
           W++Q HGQ    +H+   P +TE+FQ
Sbjct: 655 WQSQHHGQQSGEQHSHQQPGQTEVFQ 680



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>ARNT2_HUMAN (Q9HBZ2) Aryl hydrocarbon receptor nuclear translocator 2 (ARNT|
           protein 2)
          Length = 706

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 446 WKAQAHGQMHSFEHAPSDPSRTEMFQ 523
           W++Q HGQ    +H+   P +TE+FQ
Sbjct: 649 WQSQHHGQQSGEQHSHQQPGQTEVFQ 674



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>WCAC_ECOLI (P71237) Putative colanic acid biosynthesis glycosyl transferase|
           wcaC
          Length = 405

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 21/74 (28%)
 Frame = +1

Query: 256 IHKYIYIHNWMDLRSIVKACER----------------QWQHEQGCSTLD-----KFSCV 372
           +H ++    W++L+S+V+ CE+                 W     C+  D     K  C 
Sbjct: 98  LHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQ 157

Query: 373 ECPRLCHATTIKVD 414
           +CP L +   +K+D
Sbjct: 158 KCPTLNNYPPVKID 171


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,384,703
Number of Sequences: 219361
Number of extensions: 1924995
Number of successful extensions: 4434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4433
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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