ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16e19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK109426.2| Oryza sativa (japonica cultivar-group) cDNA clon... 307 2e-80
2dbj|AK073545.1| Oryza sativa (japonica cultivar-group) cDNA clon... 307 2e-80
3gb|AY105662.1| Zea mays PCO112379 mRNA sequence 212 1e-51
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
5dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
6dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
7gb|BT014025.1| Lycopersicon esculentum clone 133087R, mRNA sequence 66 1e-07
8gb|AC019057.8| Homo sapiens BAC clone RP11-121A1 from 2, complet... 42 2.1
9gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence 42 2.1
10emb|AL844904.4| Mouse DNA sequence from clone RP23-315J3 on chro... 42 2.1
11ref|NM_104382.3| Arabidopsis thaliana unknown protein AT1G55080 ... 40 8.1
12gb|AC165157.4| Mus musculus BAC clone RP23-267A24 from chromosom... 40 8.1
13gb|AC117724.14| Mus musculus chromosome 5, clone RP24-347F19, co... 40 8.1
14gb|BC070849.1| Xenopus laevis hypothetical protein MGC84587, mRN... 40 8.1
15gb|AC119954.12| Mus musculus chromosome 1, clone RP24-450P2, com... 40 8.1
16gb|AY355786.1| Canis familiaris isolate cOR8S6P olfactory recept... 40 8.1
17gb|AC160529.6| Mus musculus chromosome 1, clone RP24-141F19, com... 40 8.1
18ref|XM_846324.1| PREDICTED: Canis familiaris olfactory receptor ... 40 8.1
19ref|XM_751123.1| Ustilago maydis 521 hypothetical protein (UM000... 40 8.1
20gb|AY082333.1| Delftia acidovorans xanthine dehydrogenase small ... 40 8.1
21gb|AC165355.3| Mus musculus BAC clone RP23-129P10 from chromosom... 40 8.1
22gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, co... 40 8.1
23gb|AC110237.8| Mus musculus chromosome 5, clone RP23-104B24, com... 40 8.1
24gb|BC091056.1| Xenopus tropicalis MGC108315 protein, mRNA (cDNA ... 40 8.1
25gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 8.1
26gb|AF170802.6| Homo sapiens chromosome 8 clone GS1-13p3 map cen,... 40 8.1
27ref|NM_001030433.1| Xenopus tropicalis MGC108315 protein (MGC108... 40 8.1
28ref|NM_203664.1| Xenopus tropicalis clathrin, light polypeptide ... 40 8.1
29emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4,... 40 8.1
30gb|AC129555.29| Mus musculus chromosome 5, clone RP24-90F19, com... 40 8.1
31gb|AC103758.14| Homo sapiens chromosome 8, clone CTD-3135A9, com... 40 8.1
32gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete se... 40 8.1
33gb|AC158900.4| Mus musculus chromosome 5, clone RP23-168G15, com... 40 8.1
34gb|AC068413.11| Homo sapiens chromosome 8, clone RP11-273I9, com... 40 8.1
35gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, ... 40 8.1
36gb|AY119139.1| Drosophila melanogaster RE41430 full insert cDNA 40 8.1
37gb|AC104625.2| Drosophila melanogaster X BAC RP98-48G8 (Roswell ... 40 8.1
38gb|AC023681.5| Drosophila melanogaster X BAC RP98-39P3 (Roswell ... 40 8.1
39gb|AF461354.1| Drosophila ercepeae hunchback (hb) gene, partial cds 40 8.1
40gb|AY093241.1| Arabidopsis thaliana unknown protein (At1g55080) ... 40 8.1
41ref|NM_132581.1| Drosophila melanogaster CG11138-RC, transcript ... 40 8.1
42gb|AC154319.2| Mus musculus BAC clone RP23-331I13 from chromosom... 40 8.1
43gb|BT006281.1| Arabidopsis thaliana At1g55080 mRNA, complete cds 40 8.1
44ref|NG_004965.1| Canis familiaris cOR8S6P olfactory receptor fam... 40 8.1
45dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
46dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
47gb|AC073944.6|AC073944 Arabidopsis thaliana chromosome 1 BAC T7N... 40 8.1
48gb|AC107885.5| Homo sapiens chromosome 8, clone CTD-2552G2, comp... 40 8.1
49dbj|AP005390.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
50dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
51gb|AC107650.19| Mus musculus chromosome 6, clone RP23-133I9, com... 40 8.1
52gb|AC123994.11| Mus musculus chromosome 5, clone RP24-360P14, co... 40 8.1
53emb|CR760072.2| Xenopus tropicalis finished cDNA, clone TNeu044c07 40 8.1
54gb|AE003489.2| Drosophila melanogaster chromosome X, section 41 ... 40 8.1
55gb|BC084329.1| Xenopus laevis hypothetical LOC495134, mRNA (cDNA... 40 8.1
56gb|BC061272.1| Xenopus tropicalis clathrin, light polypeptide (L... 40 8.1
57dbj|AP008240.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 8.1 
>dbj|AK109426.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E02, full
           insert sequence
          Length = 1013

 Score =  307 bits (155), Expect = 2e-80
 Identities = 218/239 (91%)
 Strand = Plus / Minus

                                                                       
Query: 353 gttcctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccagg 412
           |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
Sbjct: 833 gttcctccagcaacaacaatagtttcagctgtaatgaatgatgcatcgtctgatgccaag 774

                                                                       
Query: 413 aaagcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcg 472
           ||||| ||||||| |||||||||||||||  ||||||||||||||||| ||||||| || 
Sbjct: 773 aaagctgcggctgcagccatgtcttccacagtacccaatctcttaagtgtgctcctgtca 714

                                                                       
Query: 473 atgagctcatttctaatggtctcattagttgtgaggaaaccagcaaaacgtgtaggaaca 532
           || ||||||||| ||||||| ||||||||||||||||||| |||||||  ||||||||||
Sbjct: 713 ataagctcatttttaatggtgtcattagttgtgaggaaacgagcaaaatttgtaggaaca 654

                                                                      
Query: 533 aaaccaggagctatacagttaacacgggtatttgggcccatctcagtagcaagagcctt 591
           |||||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||
Sbjct: 653 aaaccaggggctatacagttaacacgagtatttggccccatctcagcagcaagagcctt 595
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>dbj|AK073545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041K02, full
           insert sequence
          Length = 1127

 Score =  307 bits (155), Expect = 2e-80
 Identities = 218/239 (91%)
 Strand = Plus / Minus

                                                                       
Query: 353 gttcctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccagg 412
           |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
Sbjct: 925 gttcctccagcaacaacaatagtttcagctgtaatgaatgatgcatcgtctgatgccaag 866

                                                                       
Query: 413 aaagcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcg 472
           ||||| ||||||| |||||||||||||||  ||||||||||||||||| ||||||| || 
Sbjct: 865 aaagctgcggctgcagccatgtcttccacagtacccaatctcttaagtgtgctcctgtca 806

                                                                       
Query: 473 atgagctcatttctaatggtctcattagttgtgaggaaaccagcaaaacgtgtaggaaca 532
           || ||||||||| ||||||| ||||||||||||||||||| |||||||  ||||||||||
Sbjct: 805 ataagctcatttttaatggtgtcattagttgtgaggaaacgagcaaaatttgtaggaaca 746

                                                                      
Query: 533 aaaccaggagctatacagttaacacgggtatttgggcccatctcagtagcaagagcctt 591
           |||||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||
Sbjct: 745 aaaccaggggctatacagttaacacgagtatttggccccatctcagcagcaagagcctt 687
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>gb|AY105662.1| Zea mays PCO112379 mRNA sequence
          Length = 1142

 Score =  212 bits (107), Expect = 1e-51
 Identities = 206/239 (86%)
 Strand = Plus / Minus

                                                                       
Query: 356 cctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccaggaaa 415
           ||||||||||||||||| |||||||| |||||| | ||||| ||||| || ||||| |||
Sbjct: 943 cctccagcaacaacaatggtttcagccgtaatgtatgatgcgtcgtcagacgccagaaaa 884

                                                                       
Query: 416 gcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcgatg 475
           || || || | |||||||||||||||  ||||||||||||||||  || |||||||| | 
Sbjct: 883 gccgcagccgcagccatgtcttccacagtacccaatctcttaagcttggtcctctcgtta 824

                                                                       
Query: 476 agctcatttctaatggtctcattagttgtgaggaaaccagcaaaacgtgtaggaacaaaa 535
           ||||| || ||||||||||||||   ||||||||||| |||||| |||||||||||||||
Sbjct: 823 agctctttcctaatggtctcattttctgtgaggaaactagcaaaccgtgtaggaacaaaa 764

                                                                      
Query: 536 ccaggagctatacagttaacacgggtatttgggcccatctcagtagcaagagccttcgt 594
           ||||| ||||||||||||||||| ||||  || |||||||||  |||||||||||||||
Sbjct: 763 ccaggggctatacagttaacacgagtatcgggtcccatctcaccagcaagagccttcgt 705
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  167 bits (84), Expect = 5e-38
 Identities = 120/132 (90%)
 Strand = Plus / Plus

                                                                           
Query: 353     gttcctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccagg 412
               |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
Sbjct: 2459360 gttcctccagcaacaacaatagtttcagctgtaatgaatgatgcatcgtctgatgccaag 2459419

                                                                           
Query: 413     aaagcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcg 472
               ||||| ||||||| |||||||||||||||  ||||||||||||||||| ||||||| || 
Sbjct: 2459420 aaagctgcggctgcagccatgtcttccacagtacccaatctcttaagtgtgctcctgtca 2459479

                           
Query: 473     atgagctcattt 484
               || |||||||||
Sbjct: 2459480 ataagctcattt 2459491



 Score =  143 bits (72), Expect = 8e-31
 Identities = 96/104 (92%)
 Strand = Plus / Plus

                                                                           
Query: 487     aatggtctcattagttgtgaggaaaccagcaaaacgtgtaggaacaaaaccaggagctat 546
               |||||| ||||||||||||||||||| |||||||  |||||||||||||||||| |||||
Sbjct: 2460793 aatggtgtcattagttgtgaggaaacgagcaaaatttgtaggaacaaaaccaggggctat 2460852

                                                           
Query: 547     acagttaacacgggtatttgggcccatctcagtagcaagagcct 590
               |||||||||||| |||||||| |||||||||| |||||||||||
Sbjct: 2460853 acagttaacacgagtatttggccccatctcagcagcaagagcct 2460896
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>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0095O23
          Length = 159792

 Score =  167 bits (84), Expect = 5e-38
 Identities = 120/132 (90%)
 Strand = Plus / Plus

                                                                          
Query: 353    gttcctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccagg 412
              |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
Sbjct: 137770 gttcctccagcaacaacaatagtttcagctgtaatgaatgatgcatcgtctgatgccaag 137829

                                                                          
Query: 413    aaagcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcg 472
              ||||| ||||||| |||||||||||||||  ||||||||||||||||| ||||||| || 
Sbjct: 137830 aaagctgcggctgcagccatgtcttccacagtacccaatctcttaagtgtgctcctgtca 137889

                          
Query: 473    atgagctcattt 484
              || |||||||||
Sbjct: 137890 ataagctcattt 137901



 Score =  143 bits (72), Expect = 8e-31
 Identities = 96/104 (92%)
 Strand = Plus / Plus

                                                                          
Query: 487    aatggtctcattagttgtgaggaaaccagcaaaacgtgtaggaacaaaaccaggagctat 546
              |||||| ||||||||||||||||||| |||||||  |||||||||||||||||| |||||
Sbjct: 139203 aatggtgtcattagttgtgaggaaacgagcaaaatttgtaggaacaaaaccaggggctat 139262

                                                          
Query: 547    acagttaacacgggtatttgggcccatctcagtagcaagagcct 590
              |||||||||||| |||||||| |||||||||| |||||||||||
Sbjct: 139263 acagttaacacgagtatttggccccatctcagcagcaagagcct 139306
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>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0406E03
          Length = 201069

 Score =  167 bits (84), Expect = 5e-38
 Identities = 120/132 (90%)
 Strand = Plus / Plus

                                                                         
Query: 353   gttcctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccagg 412
             |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
Sbjct: 45950 gttcctccagcaacaacaatagtttcagctgtaatgaatgatgcatcgtctgatgccaag 46009

                                                                         
Query: 413   aaagcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcg 472
             ||||| ||||||| |||||||||||||||  ||||||||||||||||| ||||||| || 
Sbjct: 46010 aaagctgcggctgcagccatgtcttccacagtacccaatctcttaagtgtgctcctgtca 46069

                         
Query: 473   atgagctcattt 484
             || |||||||||
Sbjct: 46070 ataagctcattt 46081



 Score =  143 bits (72), Expect = 8e-31
 Identities = 96/104 (92%)
 Strand = Plus / Plus

                                                                         
Query: 487   aatggtctcattagttgtgaggaaaccagcaaaacgtgtaggaacaaaaccaggagctat 546
             |||||| ||||||||||||||||||| |||||||  |||||||||||||||||| |||||
Sbjct: 47383 aatggtgtcattagttgtgaggaaacgagcaaaatttgtaggaacaaaaccaggggctat 47442

                                                         
Query: 547   acagttaacacgggtatttgggcccatctcagtagcaagagcct 590
             |||||||||||| |||||||| |||||||||| |||||||||||
Sbjct: 47443 acagttaacacgagtatttggccccatctcagcagcaagagcct 47486
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>gb|BT014025.1| Lycopersicon esculentum clone 133087R, mRNA sequence
          Length = 1183

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                       
Query: 493 ctcattagttgtgaggaaaccagcaaaacgtgtaggaacaaaaccaggagctatacagtt 552
           ||||||| | |||| |||| |||||||| | |||||||||||||| || |||| ||||||
Sbjct: 671 ctcattactcgtgatgaaatcagcaaaatgcgtaggaacaaaacccggtgctacacagtt 612

                                                        
Query: 553 aacacgggtatttgggcccatctcagtagcaagagccttcgtaag 597
            ||||| |||| ||| | ||| ||||  ||||||||||| |||||
Sbjct: 611 tacacgagtatctggactcatttcagctgcaagagccttggtaag 567
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>gb|AC019057.8| Homo sapiens BAC clone RP11-121A1 from 2, complete sequence
          Length = 186896

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    aaaacactgaagaactaagat 113
             |||||||||||||||||||||
Sbjct: 69414 aaaacactgaagaactaagat 69434
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>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence
          Length = 184425

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 214    ctcctgagtgacgtcgcaaagcacaacccattg 246
              |||||||||| ||||||| || |||||||||||
Sbjct: 176060 ctcctgagtggcgtcgcagagaacaacccattg 176028
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>emb|AL844904.4| Mouse DNA sequence from clone RP23-315J3 on chromosome X, complete
            sequence
          Length = 186544

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 95   aacactgaagaactaagattt 115
            |||||||||||||||||||||
Sbjct: 8870 aacactgaagaactaagattt 8890
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>ref|NM_104382.3| Arabidopsis thaliana unknown protein AT1G55080 mRNA, complete cds
          Length = 878

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 354 ttcctccagcaacaacaatt 373
           ||||||||||||||||||||
Sbjct: 140 ttcctccagcaacaacaatt 159
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>gb|AC165157.4| Mus musculus BAC clone RP23-267A24 from chromosome 12, complete sequence
          Length = 205444

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    cagcaacaacaattgtttca 379
              ||||||||||||||||||||
Sbjct: 123713 cagcaacaacaattgtttca 123732
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>gb|AC117724.14| Mus musculus chromosome 5, clone RP24-347F19, complete sequence
          Length = 183083

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   agacagaggcatgcaaagac 145
             ||||||||||||||||||||
Sbjct: 31856 agacagaggcatgcaaagac 31875
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>gb|BC070849.1| Xenopus laevis hypothetical protein MGC84587, mRNA (cDNA clone
           MGC:84587 IMAGE:6639941), complete cds
          Length = 2043

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 129 cagaggcatgcaaagacgtccagg 152
           ||||||||||||||||| ||||||
Sbjct: 280 cagaggcatgcaaagacttccagg 303
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>gb|AC119954.12| Mus musculus chromosome 1, clone RP24-450P2, complete sequence
          Length = 179212

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    caccagcagcatcatcacca 73
             ||||||||||||||||||||
Sbjct: 71603 caccagcagcatcatcacca 71622
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>gb|AY355786.1| Canis familiaris isolate cOR8S6P olfactory receptor family 8
           subfamily S pseudogene, partial sequence
          Length = 852

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  gatcaccagcagcatcatca 70
           ||||||||||||||||||||
Sbjct: 115 gatcaccagcagcatcatca 96
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>gb|AC160529.6| Mus musculus chromosome 1, clone RP24-141F19, complete sequence
          Length = 167687

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     caccagcagcatcatcacca 73
              ||||||||||||||||||||
Sbjct: 161420 caccagcagcatcatcacca 161401
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>ref|XM_846324.1| PREDICTED: Canis familiaris olfactory receptor family 8 subfamily S
           (cOR8S16), mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  gatcaccagcagcatcatca 70
           ||||||||||||||||||||
Sbjct: 381 gatcaccagcagcatcatca 362
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>ref|XM_751123.1| Ustilago maydis 521 hypothetical protein (UM00069.1) partial mRNA
          Length = 3267

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 406  tgccaggaaagcggcggctgaagc 429
            ||||||||||||||| ||||||||
Sbjct: 1792 tgccaggaaagcggcagctgaagc 1769
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>gb|AY082333.1| Delftia acidovorans xanthine dehydrogenase small subunit (xdhA),
            xanthine dehydrogenase large subunit (xdhB), putative
            xanthine/uracil permease (xprA), putative sulfonate
            binding protein (ssuA), putative sulfonate transporter
            permease component (ssuC), and putative sulfonate
            transporter ATP-binding subunit (ssuB) genes, complete
            cds
          Length = 9263

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 406  tgccaggaaagcggcggctgaagccatg 433
            ||||| |||||| |||||||||||||||
Sbjct: 8297 tgccatgaaagctgcggctgaagccatg 8270
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>gb|AC165355.3| Mus musculus BAC clone RP23-129P10 from chromosome 6, complete sequence
          Length = 199100

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   atctatagtcttgattgtgt 354
             ||||||||||||||||||||
Sbjct: 64524 atctatagtcttgattgtgt 64543
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>gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, complete sequence
          Length = 175569

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   actaagattttatttgcttc 125
             ||||||||||||||||||||
Sbjct: 69891 actaagattttatttgcttc 69910
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>gb|AC110237.8| Mus musculus chromosome 5, clone RP23-104B24, complete sequence
          Length = 243323

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    agacagaggcatgcaaagac 145
              ||||||||||||||||||||
Sbjct: 207797 agacagaggcatgcaaagac 207816
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>gb|BC091056.1| Xenopus tropicalis MGC108315 protein, mRNA (cDNA clone MGC:108315
           IMAGE:7022023), complete cds
          Length = 2276

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 129 cagaggcatgcaaagacgtccagg 152
           ||||||||||||||||| ||||||
Sbjct: 214 cagaggcatgcaaagacttccagg 237
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 55      accagcagcatcatcaccag 74
               ||||||||||||||||||||
Sbjct: 2994317 accagcagcatcatcaccag 2994298
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>gb|AF170802.6| Homo sapiens chromosome 8 clone GS1-13p3 map cen, complete sequence
          Length = 89408

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    actgaagaactaagatttta 117
             ||||||||||||||||||||
Sbjct: 66798 actgaagaactaagatttta 66817
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>ref|NM_001030433.1| Xenopus tropicalis MGC108315 protein (MGC108315), mRNA
          Length = 2276

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 129 cagaggcatgcaaagacgtccagg 152
           ||||||||||||||||| ||||||
Sbjct: 214 cagaggcatgcaaagacttccagg 237
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>ref|NM_203664.1| Xenopus tropicalis clathrin, light polypeptide (Lca) (clta), mRNA
          Length = 1072

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 406 tgccaggaaagcggcggctg 425
           ||||||||||||||||||||
Sbjct: 213 tgccaggaaagcggcggctg 194
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>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24,
             complete sequence
          Length = 146168

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    actgaagaactaagatttta 117
             ||||||||||||||||||||
Sbjct: 29116 actgaagaactaagatttta 29135
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>gb|AC129555.29| Mus musculus chromosome 5, clone RP24-90F19, complete sequence
          Length = 242141

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 493    ctcattagttgtgaggaaaccagc 516
              |||| |||||||||||||||||||
Sbjct: 237876 ctcagtagttgtgaggaaaccagc 237899
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>gb|AC103758.14| Homo sapiens chromosome 8, clone CTD-3135A9, complete sequence
          Length = 235357

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    tgcttcagacagaggcatgc 139
              ||||||||||||||||||||
Sbjct: 107287 tgcttcagacagaggcatgc 107306
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>gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete sequence
          Length = 210140

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 129    cagaggcatgcaaagacgtccagg 152
              ||||||||||||||||| ||||||
Sbjct: 195142 cagaggcatgcaaagacttccagg 195119
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>gb|AC158900.4| Mus musculus chromosome 5, clone RP23-168G15, complete sequence
          Length = 211621

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 493    ctcattagttgtgaggaaaccagc 516
              |||| |||||||||||||||||||
Sbjct: 183983 ctcagtagttgtgaggaaaccagc 183960
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>gb|AC068413.11| Homo sapiens chromosome 8, clone RP11-273I9, complete sequence
          Length = 157865

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   acaattgtttcagctgtaat 387
             ||||||||||||||||||||
Sbjct: 87186 acaattgtttcagctgtaat 87205
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>gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-348F2, Complete
             Sequence, complete sequence
          Length = 194881

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 52    atcaccagcagcatcatcaccagtacag 79
             |||||||||| |||||||||||| ||||
Sbjct: 68414 atcaccagcatcatcatcaccagcacag 68441
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>gb|AY119139.1| Drosophila melanogaster RE41430 full insert cDNA
          Length = 3772

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 517 aaaacgtgtaggaacaaaac 536
           ||||||||||||||||||||
Sbjct: 88  aaaacgtgtaggaacaaaac 69
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>gb|AC104625.2| Drosophila melanogaster X BAC RP98-48G8 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 172105

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 517   aaaacgtgtaggaacaaaac 536
             ||||||||||||||||||||
Sbjct: 57988 aaaacgtgtaggaacaaaac 57969
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>gb|AC023681.5| Drosophila melanogaster X BAC RP98-39P3 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 153733

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 517    aaaacgtgtaggaacaaaac 536
              ||||||||||||||||||||
Sbjct: 100482 aaaacgtgtaggaacaaaac 100463
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>gb|AF461354.1| Drosophila ercepeae hunchback (hb) gene, partial cds
          Length = 483

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  caccagcagcatcatcacca 73
           ||||||||||||||||||||
Sbjct: 85  caccagcagcatcatcacca 104
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>gb|AY093241.1| Arabidopsis thaliana unknown protein (At1g55080) mRNA, complete cds
          Length = 874

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 354 ttcctccagcaacaacaatt 373
           ||||||||||||||||||||
Sbjct: 137 ttcctccagcaacaacaatt 156
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>ref|NM_132581.1| Drosophila melanogaster CG11138-RC, transcript variant C (CG11138),
           mRNA
          Length = 3756

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 517 aaaacgtgtaggaacaaaac 536
           ||||||||||||||||||||
Sbjct: 88  aaaacgtgtaggaacaaaac 69
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>gb|AC154319.2| Mus musculus BAC clone RP23-331I13 from chromosome 9, complete sequence
          Length = 196331

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 526    aggaacaaaaccaggagcta 545
              ||||||||||||||||||||
Sbjct: 161265 aggaacaaaaccaggagcta 161284
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>gb|BT006281.1| Arabidopsis thaliana At1g55080 mRNA, complete cds
          Length = 735

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 354 ttcctccagcaacaacaatt 373
           ||||||||||||||||||||
Sbjct: 100 ttcctccagcaacaacaatt 119
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>ref|NG_004965.1| Canis familiaris cOR8S6P olfactory receptor family 8 subfamily S
           pseudogene (cOR8S6P) on chromosome 27
          Length = 852

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  gatcaccagcagcatcatca 70
           ||||||||||||||||||||
Sbjct: 115 gatcaccagcagcatcatca 96
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 98       actgaagaactaagatttta 117
                ||||||||||||||||||||
Sbjct: 33978219 actgaagaactaagatttta 33978238
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 500      gttgtgaggaaaccagcaaa 519
                ||||||||||||||||||||
Sbjct: 11750763 gttgtgaggaaaccagcaaa 11750744
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>gb|AC073944.6|AC073944 Arabidopsis thaliana chromosome 1 BAC T7N22 genomic sequence, complete
             sequence
          Length = 44540

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 354   ttcctccagcaacaacaatt 373
             ||||||||||||||||||||
Sbjct: 14013 ttcctccagcaacaacaatt 13994
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>gb|AC107885.5| Homo sapiens chromosome 8, clone CTD-2552G2, complete sequence
          Length = 163298

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     actgaagaactaagatttta 117
              ||||||||||||||||||||
Sbjct: 103536 actgaagaactaagatttta 103555
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>dbj|AP005390.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0075O18
          Length = 125411

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 500   gttgtgaggaaaccagcaaa 519
             ||||||||||||||||||||
Sbjct: 80463 gttgtgaggaaaccagcaaa 80444
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>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1705_A03
          Length = 168689

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 500   gttgtgaggaaaccagcaaa 519
             ||||||||||||||||||||
Sbjct: 29048 gttgtgaggaaaccagcaaa 29029
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>gb|AC107650.19| Mus musculus chromosome 6, clone RP23-133I9, complete sequence
          Length = 225883

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   atctatagtcttgattgtgt 354
             ||||||||||||||||||||
Sbjct: 53377 atctatagtcttgattgtgt 53358
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>gb|AC123994.11| Mus musculus chromosome 5, clone RP24-360P14, complete sequence
          Length = 148929

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 493    ctcattagttgtgaggaaaccagc 516
              |||| |||||||||||||||||||
Sbjct: 115588 ctcagtagttgtgaggaaaccagc 115565
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>emb|CR760072.2| Xenopus tropicalis finished cDNA, clone TNeu044c07
          Length = 945

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 406 tgccaggaaagcggcggctg 425
           ||||||||||||||||||||
Sbjct: 100 tgccaggaaagcggcggctg 81
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>gb|AE003489.2| Drosophila melanogaster chromosome X, section 41 of 74 of the complete
              sequence
          Length = 291799

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 517    aaaacgtgtaggaacaaaac 536
              ||||||||||||||||||||
Sbjct: 250879 aaaacgtgtaggaacaaaac 250898
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>gb|BC084329.1| Xenopus laevis hypothetical LOC495134, mRNA (cDNA clone MGC:83943
           IMAGE:6861944), complete cds
          Length = 1920

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 129 cagaggcatgcaaagacgtccagg 152
           ||||||||||||||||| ||||||
Sbjct: 241 cagaggcatgcaaagacttccagg 264
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>gb|BC061272.1| Xenopus tropicalis clathrin, light polypeptide (Lca), mRNA (cDNA
           clone MGC:75712 IMAGE:5380749), complete cds
          Length = 1072

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 406 tgccaggaaagcggcggctg 425
           ||||||||||||||||||||
Sbjct: 213 tgccaggaaagcggcggctg 194
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>dbj|AP008240.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT39G20, TM0353a,
             complete sequence
          Length = 78736

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                             
Query: 530   acaaaaccaggagctatacagttaacacgggtatttgggcccatctca 577
             |||||||||||||| | |||||| ||||| || || ||| ||||||||
Sbjct: 28672 acaaaaccaggagcaacacagtttacacgagtgttcggggccatctca 28625


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,993,608
Number of Sequences: 3902068
Number of extensions: 4993608
Number of successful extensions: 125022
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124798
Number of HSP's gapped (non-prelim): 224
length of query: 597
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 574
effective length of database: 17,143,297,704
effective search space: 9840252882096
effective search space used: 9840252882096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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