ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16e15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
2dbj|AK099749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
3dbj|AK100309.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
4dbj|AK060880.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
5emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4,... 111 2e-21
6ref|XM_474409.1| Oryza sativa (japonica cultivar-group), predic... 107 3e-20
7emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 103 5e-19
8gb|AY105136.1| Zea mays PCO114928 mRNA sequence 56 1e-04
9gb|AC138134.6| Mus musculus strain C57BL/6J clone rp23-382i2 map... 42 1.6
10gb|AC108359.4| Homo sapiens chromosome X clone RP11-467P22, comp... 42 1.6
11gb|AC149059.3| Mus musculus BAC clone RP23-325A2 from 18, comple... 42 1.6
12ref|XM_588946.2| PREDICTED: Bos taurus hypothetical LOC511583 (L... 40 6.5
13gb|AC114637.9| Mus musculus chromosome 3, clone RP24-119G15, com... 40 6.5
14gb|AE008999.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 6.5
15gb|AC004690.2| Homo sapiens PAC clone RP4-630C24 from 7, complet... 40 6.5
16gb|AC091158.11| Mus musculus Strain C57BL6/J chromosome 6 BAC, R... 40 6.5
17emb|AL162758.2|NMA7Z2491 Neisseria meningitidis serogroup A stra... 40 6.5
18dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, compl... 40 6.5
19gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 6.5
20gb|AC119995.22| Mus musculus chromosome 3, clone RP24-120B18, co... 40 6.5
21gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 6.5
22dbj|AK109947.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
23gb|AF161263.1|AF161263 Pseudomonas aeruginosa chlorocatechol-1,2... 40 6.5
24gb|AC123027.4| Mus musculus BAC clone RP24-550H11 from 3, comple... 40 6.5
25gb|AC162924.5| Mus musculus BAC clone RP23-292J21 from chromosom... 40 6.5
26emb|AL691485.9| Mouse DNA sequence from clone RP23-26D14 on chro... 40 6.5 
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  111 bits (56), Expect = 2e-21
 Identities = 115/134 (85%), Gaps = 3/134 (2%)
 Strand = Plus / Plus

                                                                            
Query: 92       agctatcctctagaagagttgatatcaatattggagcttcgcgtgtcaaatatcccagag 151
                ||||| |||||||| |||||||||||||| ||||| |||| ||||||||||||||| |||
Sbjct: 34957624 agctagcctctagatgagttgatatcaatgttggaacttctcgtgtcaaatatcccggag 34957683

                                                                            
Query: 152      ctaggccatcctcccgtcgtt---acaatggagggcggcgttaggttttggttatgtcct 208
                |||||||| ||||||||||||   |||  ||  ||||||||||| ||||||||||| || 
Sbjct: 34957684 ctaggccaccctcccgtcgttgttacagggggcggcggcgttagattttggttatggccg 34957743

                              
Query: 209      gagctgggtgacgc 222
                ||||| || |||||
Sbjct: 34957744 gagctcggcgacgc 34957757



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                            
Query: 344      ctggcagctaccaatgcgccacccagaacgcctccaatgacatgcctctccgggctgcag 403
                ||||||||||||||||| || || |||||||||||||||| ||||||||| |||||||| 
Sbjct: 34958281 ctggcagctaccaatgctccgccgagaacgcctccaatgatatgcctctcggggctgcac 34958340

                           
Query: 404      agcgtgacgct 414
                ||||| |||||
Sbjct: 34958341 agcgtcacgct 34958351
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>dbj|AK099749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091P17, full
            insert sequence
          Length = 2890

 Score =  111 bits (56), Expect = 2e-21
 Identities = 115/134 (85%), Gaps = 3/134 (2%)
 Strand = Plus / Minus

                                                                        
Query: 92   agctatcctctagaagagttgatatcaatattggagcttcgcgtgtcaaatatcccagag 151
            ||||| |||||||| |||||||||||||| ||||| |||| ||||||||||||||| |||
Sbjct: 2740 agctagcctctagatgagttgatatcaatgttggaacttctcgtgtcaaatatcccggag 2681

                                                                        
Query: 152  ctaggccatcctcccgtcgtt---acaatggagggcggcgttaggttttggttatgtcct 208
            |||||||| ||||||||||||   |||  ||  ||||||||||| ||||||||||| || 
Sbjct: 2680 ctaggccaccctcccgtcgttgttacagggggcggcggcgttagattttggttatggccg 2621

                          
Query: 209  gagctgggtgacgc 222
            ||||| || |||||
Sbjct: 2620 gagctcggcgacgc 2607



 Score =  107 bits (54), Expect = 3e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  gtttcacggctttcttggactttgatttggaccctccttgcacaaaagtccctagcacca 332
            ||||| |||| ||||| ||||| |  || |||||||| ||||| ||| |||| || ||||
Sbjct: 2541 gtttcccggccttcttcgacttgggcttcgaccctccctgcacgaaactcccaagtacca 2482

                                                                        
Query: 333  cctgcacagtactggcagctaccaatgcgccacccagaacgcctccaatgacatgcctct 392
            |||| || || ||||||||||||||||| || || |||||||||||||||| ||||||||
Sbjct: 2481 cctgaacggtgctggcagctaccaatgctccgccgagaacgcctccaatgatatgcctct 2422

                                  
Query: 393  ccgggctgcagagcgtgacgct 414
            | |||||||| ||||| |||||
Sbjct: 2421 cggggctgcacagcgtcacgct 2400
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>dbj|AK100309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078J11, full
            insert sequence
          Length = 1869

 Score =  111 bits (56), Expect = 2e-21
 Identities = 115/134 (85%), Gaps = 3/134 (2%)
 Strand = Plus / Minus

                                                                        
Query: 92   agctatcctctagaagagttgatatcaatattggagcttcgcgtgtcaaatatcccagag 151
            ||||| |||||||| |||||||||||||| ||||| |||| ||||||||||||||| |||
Sbjct: 1626 agctagcctctagatgagttgatatcaatgttggaacttctcgtgtcaaatatcccggag 1567

                                                                        
Query: 152  ctaggccatcctcccgtcgtt---acaatggagggcggcgttaggttttggttatgtcct 208
            |||||||| ||||||||||||   |||  ||  ||||||||||| ||||||||||| || 
Sbjct: 1566 ctaggccaccctcccgtcgttgttacagggggcggcggcgttagattttggttatggccg 1507

                          
Query: 209  gagctgggtgacgc 222
            ||||| || |||||
Sbjct: 1506 gagctcggcgacgc 1493



 Score =  107 bits (54), Expect = 3e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  gtttcacggctttcttggactttgatttggaccctccttgcacaaaagtccctagcacca 332
            ||||| |||| ||||| ||||| |  || |||||||| ||||| ||| |||| || ||||
Sbjct: 1427 gtttcccggccttcttcgacttgggcttcgaccctccctgcacgaaactcccaagtacca 1368

                                                                        
Query: 333  cctgcacagtactggcagctaccaatgcgccacccagaacgcctccaatgacatgcctct 392
            |||| || || ||||||||||||||||| || || |||||||||||||||| ||||||||
Sbjct: 1367 cctgaacggtgctggcagctaccaatgctccgccgagaacgcctccaatgatatgcctct 1308

                                  
Query: 393  ccgggctgcagagcgtgacgct 414
            | |||||||| ||||| |||||
Sbjct: 1307 cggggctgcacagcgtcacgct 1286
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>dbj|AK060880.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A09, full
            insert sequence
          Length = 1685

 Score =  111 bits (56), Expect = 2e-21
 Identities = 115/134 (85%), Gaps = 3/134 (2%)
 Strand = Plus / Minus

                                                                        
Query: 92   agctatcctctagaagagttgatatcaatattggagcttcgcgtgtcaaatatcccagag 151
            ||||| |||||||| |||||||||||||| ||||| |||| ||||||||||||||| |||
Sbjct: 1456 agctagcctctagatgagttgatatcaatgttggaacttctcgtgtcaaatatcccggag 1397

                                                                        
Query: 152  ctaggccatcctcccgtcgtt---acaatggagggcggcgttaggttttggttatgtcct 208
            |||||||| ||||||||||||   |||  ||  ||||||||||| ||||||||||| || 
Sbjct: 1396 ctaggccaccctcccgtcgttgttacagggggcggcggcgttagattttggttatggccg 1337

                          
Query: 209  gagctgggtgacgc 222
            ||||| || |||||
Sbjct: 1336 gagctcggcgacgc 1323



 Score =  107 bits (54), Expect = 3e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                        
Query: 273  gtttcacggctttcttggactttgatttggaccctccttgcacaaaagtccctagcacca 332
            ||||| |||| ||||| ||||| |  || |||||||| ||||| ||| |||| || ||||
Sbjct: 1257 gtttcccggccttcttcgacttgggcttcgaccctccctgcacgaaactcccaagtacca 1198

                                                                        
Query: 333  cctgcacagtactggcagctaccaatgcgccacccagaacgcctccaatgacatgcctct 392
            |||| || || ||||||||||||||||| || || |||||||||||||||| ||||||||
Sbjct: 1197 cctgaacggtgctggcagctaccaatgctccgccgagaacgcctccaatgatatgcctct 1138

                                  
Query: 393  ccgggctgcagagcgtgacgct 414
            | |||||||| ||||| |||||
Sbjct: 1137 cggggctgcacagcgtcacgct 1116
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>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
             complete sequence
          Length = 145391

 Score =  111 bits (56), Expect = 2e-21
 Identities = 115/134 (85%), Gaps = 3/134 (2%)
 Strand = Plus / Plus

                                                                         
Query: 92    agctatcctctagaagagttgatatcaatattggagcttcgcgtgtcaaatatcccagag 151
             ||||| |||||||| |||||||||||||| ||||| |||| ||||||||||||||| |||
Sbjct: 16676 agctagcctctagatgagttgatatcaatgttggaacttctcgtgtcaaatatcccggag 16735

                                                                         
Query: 152   ctaggccatcctcccgtcgtt---acaatggagggcggcgttaggttttggttatgtcct 208
             |||||||| ||||||||||||   |||  ||  ||||||||||| ||||||||||| || 
Sbjct: 16736 ctaggccaccctcccgtcgttgttacagggggcggcggcgttagattttggttatggccg 16795

                           
Query: 209   gagctgggtgacgc 222
             ||||| || |||||
Sbjct: 16796 gagctcggcgacgc 16809



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                         
Query: 344   ctggcagctaccaatgcgccacccagaacgcctccaatgacatgcctctccgggctgcag 403
             ||||||||||||||||| || || |||||||||||||||| ||||||||| |||||||| 
Sbjct: 17333 ctggcagctaccaatgctccgccgagaacgcctccaatgatatgcctctcggggctgcac 17392

                        
Query: 404   agcgtgacgct 414
             ||||| |||||
Sbjct: 17393 agcgtcacgct 17403
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>ref|XM_474409.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1071

 Score =  107 bits (54), Expect = 3e-20
 Identities = 110/128 (85%), Gaps = 3/128 (2%)
 Strand = Plus / Minus

                                                                        
Query: 98   cctctagaagagttgatatcaatattggagcttcgcgtgtcaaatatcccagagctaggc 157
            |||||||| |||||||||||||| ||||| |||| ||||||||||||||| |||||||||
Sbjct: 1067 cctctagatgagttgatatcaatgttggaacttctcgtgtcaaatatcccggagctaggc 1008

                                                                        
Query: 158  catcctcccgtcgtt---acaatggagggcggcgttaggttttggttatgtcctgagctg 214
            || ||||||||||||   |||  ||  ||||||||||| ||||||||||| || ||||| 
Sbjct: 1007 caccctcccgtcgttgttacagggggcggcggcgttagattttggttatggccggagctc 948

                    
Query: 215  ggtgacgc 222
            || |||||
Sbjct: 947  ggcgacgc 940



 Score =  107 bits (54), Expect = 3e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                       
Query: 273 gtttcacggctttcttggactttgatttggaccctccttgcacaaaagtccctagcacca 332
           ||||| |||| ||||| ||||| |  || |||||||| ||||| ||| |||| || ||||
Sbjct: 874 gtttcccggccttcttcgacttgggcttcgaccctccctgcacgaaactcccaagtacca 815

                                                                       
Query: 333 cctgcacagtactggcagctaccaatgcgccacccagaacgcctccaatgacatgcctct 392
           |||| || || ||||||||||||||||| || || |||||||||||||||| ||||||||
Sbjct: 814 cctgaacggtgctggcagctaccaatgctccgccgagaacgcctccaatgatatgcctct 755

                                 
Query: 393 ccgggctgcagagcgtgacgct 414
           | |||||||| ||||| |||||
Sbjct: 754 cggggctgcacagcgtcacgct 733
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>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete
             sequence
          Length = 84361

 Score =  103 bits (52), Expect = 5e-19
 Identities = 114/134 (85%), Gaps = 3/134 (2%)
 Strand = Plus / Plus

                                                                         
Query: 92    agctatcctctagaagagttgatatcaatattggagcttcgcgtgtcaaatatcccagag 151
             ||||| |||||||| |||||||||||||| ||||| |||| ||||||||||||||| |||
Sbjct: 63005 agctagcctctagatgagttgatatcaatgttggaacttctcgtgtcaaatatcccggag 63064

                                                                         
Query: 152   ctaggccatcctcccgtcgtt---acaatggagggcggcgttaggttttggttatgtcct 208
             |||||||| ||||| ||||||   |||  ||  ||||||||||| ||||||||||| || 
Sbjct: 63065 ctaggccaccctccggtcgttgttacagggggcggcggcgttagattttggttatggccg 63124

                           
Query: 209   gagctgggtgacgc 222
             ||||| || |||||
Sbjct: 63125 gagctcggcgacgc 63138



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                         
Query: 344   ctggcagctaccaatgcgccacccagaacgcctccaatgacatgcctctccgggctgcag 403
             ||||||||||||||||| || || |||||||||||||||| ||||||||| |||||||| 
Sbjct: 63662 ctggcagctaccaatgctccgccgagaacgcctccaatgatatgcctctcggggctgcac 63721

                        
Query: 404   agcgtgacgct 414
             ||||| |||||
Sbjct: 63722 agcgtcacgct 63732
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>gb|AY105136.1| Zea mays PCO114928 mRNA sequence
          Length = 806

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 365 cccagaacgcctccaatgacatgcctctccgggctgcagagcgtgacgctga 416
           |||| ||| ||||| || |||| |||||| ||||||||||||||||||||||
Sbjct: 554 cccaaaacacctccgatcacattcctctcagggctgcagagcgtgacgctga 503
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>gb|AC138134.6| Mus musculus strain C57BL/6J clone rp23-382i2 map 18, complete sequence
          Length = 202316

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 135    tgtcaaatatcccagagctag 155
              |||||||||||||||||||||
Sbjct: 124804 tgtcaaatatcccagagctag 124784
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>gb|AC108359.4| Homo sapiens chromosome X clone RP11-467P22, complete sequence
          Length = 189224

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 190   taggttttggttatgtcctgagctg 214
             ||||||| |||||||||||||||||
Sbjct: 87565 taggtttaggttatgtcctgagctg 87541
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>gb|AC149059.3| Mus musculus BAC clone RP23-325A2 from 18, complete sequence
          Length = 206973

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   tgtcaaatatcccagagctag 155
             |||||||||||||||||||||
Sbjct: 22243 tgtcaaatatcccagagctag 22223
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>ref|XM_588946.2| PREDICTED: Bos taurus hypothetical LOC511583 (LOC511583), partial
            mRNA
          Length = 4029

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 384  catgcctctccgggctgcag 403
            ||||||||||||||||||||
Sbjct: 1835 catgcctctccgggctgcag 1816
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>gb|AC114637.9| Mus musculus chromosome 3, clone RP24-119G15, complete sequence
          Length = 179087

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 449    agattgtaagagccagataa 468
              ||||||||||||||||||||
Sbjct: 167318 agattgtaagagccagataa 167299
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>gb|AE008999.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 25 of
             256 of the complete sequence
          Length = 11346

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   aaggccgccggcggtttcac 279
             ||||||||||||||||||||
Sbjct: 10365 aaggccgccggcggtttcac 10384
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>gb|AC004690.2| Homo sapiens PAC clone RP4-630C24 from 7, complete sequence
          Length = 142123

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     aagtatacatttggtattct 40
              ||||||||||||||||||||
Sbjct: 116160 aagtatacatttggtattct 116179
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>gb|AC091158.11| Mus musculus Strain C57BL6/J chromosome 6 BAC, RP23-109E8, Complete
             Sequence, complete sequence
          Length = 195048

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   agattgtaagagccagataa 468
             ||||||||||||||||||||
Sbjct: 13083 agattgtaagagccagataa 13102
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>emb|AL162758.2|NMA7Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome;
             segment 7/7
          Length = 195767

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 420   catcggtttgattttgctgg 439
             ||||||||||||||||||||
Sbjct: 55735 catcggtttgattttgctgg 55754
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>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 424     ggtttgattttgctggccct 443
               ||||||||||||||||||||
Sbjct: 2794404 ggtttgattttgctggccct 2794385
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    aaggccgccggcggtttcac 279
              ||||||||||||||||||||
Sbjct: 273286 aaggccgccggcggtttcac 273305
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>gb|AC119995.22| Mus musculus chromosome 3, clone RP24-120B18, complete sequence
          Length = 182140

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   agattgtaagagccagataa 468
             ||||||||||||||||||||
Sbjct: 12789 agattgtaagagccagataa 12770
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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    catcggtttgattttgctgg 439
              ||||||||||||||||||||
Sbjct: 398002 catcggtttgattttgctgg 397983
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>dbj|AK109947.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-A01, full
            insert sequence
          Length = 2870

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 221  gccacgtctggcccagcgcc 240
            ||||||||||||||||||||
Sbjct: 2490 gccacgtctggcccagcgcc 2471
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>gb|AF161263.1|AF161263 Pseudomonas aeruginosa chlorocatechol-1,2-dioxygenase (clcA),
           chloromuconate cycloisomerase (clcB), and dienelactone
           hydrolase (clcD) genes, complete cds; and unknown gene
          Length = 4661

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 234 cagcgccggcgagcgactcg 253
           ||||||||||||||||||||
Sbjct: 753 cagcgccggcgagcgactcg 734
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>gb|AC123027.4| Mus musculus BAC clone RP24-550H11 from 3, complete sequence
          Length = 191211

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 449    agattgtaagagccagataa 468
              ||||||||||||||||||||
Sbjct: 154697 agattgtaagagccagataa 154716
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>gb|AC162924.5| Mus musculus BAC clone RP23-292J21 from chromosome 6, complete sequence
          Length = 179209

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   agattgtaagagccagataa 468
             ||||||||||||||||||||
Sbjct: 81104 agattgtaagagccagataa 81123
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>emb|AL691485.9| Mouse DNA sequence from clone RP23-26D14 on chromosome 3, complete
             sequence
          Length = 67491

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   agattgtaagagccagataa 468
             ||||||||||||||||||||
Sbjct: 61260 agattgtaagagccagataa 61279


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,078,220
Number of Sequences: 3902068
Number of extensions: 3078220
Number of successful extensions: 57989
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57896
Number of HSP's gapped (non-prelim): 93
length of query: 481
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 459
effective length of database: 17,147,199,772
effective search space: 7870564695348
effective search space used: 7870564695348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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