ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCNL4_MOUSE (Q8CCA0) DCN1-like protein 4 (Defective in cullin ne... 30 4.8
2DCNL4_HUMAN (Q92564) DCN1-like protein 4 (Defective in cullin ne... 30 4.8
3LAML2_CAEEL (Q21313) Laminin-like protein K08C7.3 precursor 30 8.2

>DCNL4_MOUSE (Q8CCA0) DCN1-like protein 4 (Defective in cullin neddylation|
           protein 1-like protein 4) (DCUN1 domain-containing
           protein 4)
          Length = 292

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -1

Query: 126 TAPCRLNLVINRALGKIAPLMPVYYSYLEE 37
           TA C L L+    LGKI PL PV++ +LE+
Sbjct: 216 TAKCMLGLL----LGKIWPLFPVFHQFLEQ 241



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>DCNL4_HUMAN (Q92564) DCN1-like protein 4 (Defective in cullin neddylation|
           protein 1-like protein 4) (DCUN1 domain-containing
           protein 4)
          Length = 292

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -1

Query: 126 TAPCRLNLVINRALGKIAPLMPVYYSYLEE 37
           TA C L L+    LGKI PL PV++ +LE+
Sbjct: 216 TAKCMLGLL----LGKIWPLFPVFHQFLEQ 241



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>LAML2_CAEEL (Q21313) Laminin-like protein K08C7.3 precursor|
          Length = 3672

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 73   CNFTQCSVNNQIKPTRCCYPML--CYLLQFRQAAGHC 177
            C+  QC+ NN +  +R C+P    CYL +      HC
Sbjct: 1934 CSPCQCNGNNNLTDSRSCHPNSGDCYLCEQNTDGRHC 1970


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,491,166
Number of Sequences: 219361
Number of extensions: 1984835
Number of successful extensions: 5102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5100
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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