ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15p02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 870 bits (439), Expect = 0.0 Identities = 493/515 (95%), Gaps = 1/515 (0%) Strand = Plus / Plus Query: 187 agatttctttactatatttagtacaattgttatatgacacatgcnnnnnnnnatagggaa 246 |||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 79877 agatttctttactatatttagtacaattgttatatgacacatgcttttttttatggggaa 79936 Query: 247 actacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcggc 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79937 actacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcggc 79996 Query: 307 tttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggctg 366 ||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct: 79997 tttagtaataaataaattcgctttg-tcgaaatccctataatgagtagcatttgcggctg 80055 Query: 367 ccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatca 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80056 ccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatca 80115 Query: 427 taacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaa 486 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 80116 taacagtttcctcgtagtaacgccagcgaatctcgtcaagaactctttgtgctttgaaaa 80175 Query: 487 cagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcgg 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80176 cagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcgg 80235 Query: 547 ttggaactttccttgcgagtttccttagcccacttttcttcttctttatcctagggatat 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80236 ttggaactttccttgcgagtttccttagcccacttttcttcttctttatcctagggatat 80295 Query: 607 actttactagtttgaaacttgtcataaataagtttattccccgcctacctttactttatt 666 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 80296 actttactagtttgaaacttgtcataaataaggttattccccgcctacctttactttatt 80355 Query: 667 ttgaatcnnnnnnnncttcttaatctttctattca 701 ||||||| |||||||||||||||||||| Sbjct: 80356 ttgaatcttttttttcttcttaatctttctattca 80390 Score = 192 bits (97), Expect = 1e-45 Identities = 135/148 (91%), Gaps = 2/148 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 79730 cctgtagaccttccg-aataattttttggttgtgcgaaccaaaaggaatggtgtttttgg 79788 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctata 138 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79789 gttgtaccaagtctgaaaccgagtggatttattttttgtcccatatttttctattctata 79848 Query: 139 nnnnnnnnnactgggaatcgaaatctta 166 ||||||||||||||||||| Sbjct: 79849 tttttttttactgggaatcgaaatctta 79876 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 682 cttcttaatctttctattca 701 |||||||||||||||||||| Sbjct: 134523 cttcttaatctttctattca 134504
>ref|XM_481016.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2472 Score = 662 bits (334), Expect = 0.0 Identities = 456/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Minus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 807 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 748 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 747 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 688 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 687 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 629 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 628 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 569 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 568 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 509 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 508 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 449 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 448 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 389 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 388 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 329 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 328 gttattccccgcttacct 311 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Minus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 942 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 884 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 883 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 825
>ref|XM_481017.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2472 Score = 662 bits (334), Expect = 0.0 Identities = 456/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Minus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 807 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 748 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 747 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 688 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 687 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 629 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 628 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 569 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 568 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 509 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 508 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 449 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 448 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 389 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 388 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 329 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 328 gttattccccgcttacct 311 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Minus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 942 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 884 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 883 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 825
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 662 bits (334), Expect = 0.0 Identities = 456/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Plus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 80109 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 80168 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 80169 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 80228 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 80229 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 80287 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 80288 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 80347 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 80348 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 80407 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 80408 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 80467 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 80468 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 80527 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 80528 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 80587 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 80588 gttattccccgcttacct 80605 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 79974 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 80032 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 80033 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 80091
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 662 bits (334), Expect = 0.0 Identities = 456/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Plus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 80109 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 80168 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 80169 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 80228 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 80229 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 80287 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 80288 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 80347 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 80348 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 80407 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 80408 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 80467 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 80468 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 80527 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 80528 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 80587 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 80588 gttattccccgcttacct 80605 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 79974 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 80032 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 80033 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 80091
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 662 bits (334), Expect = 0.0 Identities = 456/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Plus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 80052 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 80111 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 80112 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 80171 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 80172 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 80230 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 80231 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 80290 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 80291 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 80350 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 80351 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 80410 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 80411 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 80470 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 80471 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 80530 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 80531 gttattccccgcttacct 80548 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 79917 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 79975 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 79976 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 80034
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 662 bits (334), Expect = 0.0 Identities = 456/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Plus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 80097 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 80156 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 80157 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 80216 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 80217 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 80275 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 80276 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 80335 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 80336 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 80395 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 80396 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 80455 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 80456 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 80515 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 80516 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 80575 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 80576 gttattccccgcttacct 80593 Score = 174 bits (88), Expect = 3e-40 Identities = 111/116 (95%), Gaps = 2/116 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 79961 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 80019 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattc 134 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 80020 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattc 80075
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 662 bits (334), Expect = 0.0 Identities = 456/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Minus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 70645 aaatcttagatggatctaaagattattttgatttctttactatatttagtacaattgtta 70586 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 70585 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 70526 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 70525 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 70467 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 70466 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 70407 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 70406 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 70347 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 70346 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 70287 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 70286 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 70227 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 70226 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 70167 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 70166 gttattccccgcttacct 70149 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Minus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 70780 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 70722 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 70721 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 70663
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 662 bits (334), Expect = 0.0 Identities = 456/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Plus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 9212532 aaatcttagatggatctaaagattattttgatttctttactatatttagtacaattgtta 9212591 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 9212592 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 9212651 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 9212652 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 9212710 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 9212711 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 9212770 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 9212771 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 9212830 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 9212831 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 9212890 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 9212891 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 9212950 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 9212951 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 9213010 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 9213011 gttattccccgcttacct 9213028 Score = 662 bits (334), Expect = 0.0 Identities = 456/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Minus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 9189572 aaatcttagatggatctaaagattattttgatttctttactatatttagtacaattgtta 9189513 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 9189512 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 9189453 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 9189452 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 9189394 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 9189393 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 9189334 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 9189333 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 9189274 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 9189273 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 9189214 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 9189213 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 9189154 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 9189153 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 9189094 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 9189093 gttattccccgcttacct 9189076 Score = 662 bits (334), Expect = 0.0 Identities = 456/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Minus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 9112619 aaatcttagatggatctaaagattattttgatttctttactatatttagtacaattgtta 9112560 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 9112559 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 9112500 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 9112499 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 9112441 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 9112440 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 9112381 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 9112380 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 9112321 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 9112320 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 9112261 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 9112260 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 9112201 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 9112200 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 9112141 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 9112140 gttattccccgcttacct 9112123 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Minus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 9189707 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 9189649 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 9189648 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 9189590 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Minus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 9112754 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 9112696 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 9112695 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 9112637 Score = 141 bits (71), Expect = 4e-30 Identities = 86/91 (94%) Strand = Plus / Minus Query: 370 aataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatcataa 429 ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 11711485 aataaaccaactttaagatgggataagatgctcgatatggcatgaggttcaatatcataa 11711426 Query: 430 cagtttcctcgtagtaacgccaccgaatctc 460 |||||| |||||||||||||| |||||||| Sbjct: 11711425 tagtttcttcgtagtaacgccaacgaatctc 11711395 Score = 67.9 bits (34), Expect = 4e-08 Identities = 34/34 (100%) Strand = Plus / Plus Query: 104 gatttattttttgtcccatatttttctattctat 137 |||||||||||||||||||||||||||||||||| Sbjct: 9212481 gatttattttttgtcccatatttttctattctat 9212514
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 662 bits (334), Expect = 0.0 Identities = 456/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Minus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 9256962 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 9256903 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 9256902 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 9256843 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 9256842 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 9256784 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 9256783 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 9256724 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 9256723 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 9256664 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 9256663 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 9256604 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 9256603 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 9256544 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 9256543 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 9256484 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 9256483 gttattccccgcttacct 9256466 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Minus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 9257097 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 9257039 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 9257038 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 9256980
>dbj|AP005161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0036E18 Length = 141148 Score = 662 bits (334), Expect = 0.0 Identities = 456/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Minus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 68175 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 68116 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 68115 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 68056 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 68055 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 67997 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 67996 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 67937 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 67936 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 67877 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 67876 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 67817 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 67816 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 67757 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 67756 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 67697 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 67696 gttattccccgcttacct 67679 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Minus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 68310 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 68252 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 68251 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 68193
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 662 bits (334), Expect = 0.0 Identities = 456/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Plus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 80049 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 80108 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 80109 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 80168 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 80169 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 80227 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 80228 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 80287 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 80288 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 80347 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 80348 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 80407 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 80408 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 80467 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 80468 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 80527 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 80528 gttattccccgcttacct 80545 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 79914 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 79972 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 79973 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 80031
>ref|XM_479425.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2380 Score = 654 bits (330), Expect = 0.0 Identities = 455/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Minus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 714 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 655 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 654 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 595 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 594 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 536 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 535 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagataggataagat 476 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 475 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 416 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 415 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 356 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 355 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 296 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 295 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 236 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 235 gttattccccgcttacct 218 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Minus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 849 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 791 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 790 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 732
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 654 bits (330), Expect = 0.0 Identities = 455/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Minus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 14453591 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 14453532 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 14453531 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 14453472 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 14453471 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 14453413 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 14453412 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 14453353 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 14453352 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 14453293 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 14453292 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 14453233 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct: 14453232 acccgttcgaacttaagtagacgatcagttggtacttttcttgcgagtttccttagccca 14453173 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 14453172 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 14453113 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 14453112 gttattccccgcttacct 14453095 Score = 525 bits (265), Expect = e-146 Identities = 376/411 (91%), Gaps = 4/411 (0%) Strand = Plus / Minus Query: 246 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 305 |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| Sbjct: 11893711 aactacgtcctcgagcccgaggtctgaatttattcataatagtact---actgacttcgg 11893655 Query: 306 ctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggct 365 ||||||| ||||||||||| |||||| |||||||||||||||||||| |||||||| ||| Sbjct: 11893654 ctttagtgatgaataaatttgctttg-tcgaaatccctataatgagtagcatttgctgct 11893596 Query: 366 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 425 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 11893595 accgaataaaccaactttaagatgggataagatgctcgataaggcatgaggttcaatatc 11893536 Query: 426 ataacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaa 485 ||||||||||| |||||||||||||| |||||||| || |||||||||||| |||||||| Sbjct: 11893535 ataacagtttcttcgtagtaacgccaacgaatctcatccagaactctttgtactttgaaa 11893476 Query: 486 acagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcg 545 || ||||| |||| |||||||||||||||||||| | ||||||||||||||| ||||| Sbjct: 11893475 acggacatgtggatgcgtttttgtgctttgaaaacccgttcgaacttaagtagatgatcg 11893416 Query: 546 gttggaactttccttgcgagtttccttagcccacttttcttcttctttatcctagggata 605 ||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |||| || Sbjct: 11893415 gttggtacttttcttgcgagtttccttagcccactcttcttcttctttatcccaggggta 11893356 Query: 606 tactttactagtttgaaacttgtcataaataagtttattccccgcctacct 656 |||||||| |||||||||||||| ||||||||| ||||||||||| ||||| Sbjct: 11893355 tactttaccagtttgaaacttgttataaataaggttattccccgcttacct 11893305 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Minus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14453725 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 14453667 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 14453666 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 14453608 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Minus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 11893933 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 11893875 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 11893874 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 11893816 Score = 125 bits (63), Expect = 2e-25 Identities = 69/71 (97%) Strand = Plus / Minus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 11893799 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 11893740 Query: 219 tatgacacatg 229 ||||||||||| Sbjct: 11893739 tatgacacatg 11893729
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 654 bits (330), Expect = 0.0 Identities = 455/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Plus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 27925582 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 27925641 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 27925642 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 27925701 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 27925702 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 27925760 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 27925761 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagataggataagat 27925820 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 27925821 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 27925880 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 27925881 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 27925940 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 27925941 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 27926000 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 27926001 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 27926060 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 27926061 gttattccccgcttacct 27926078 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 27925447 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 27925505 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 27925506 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 27925564 Score = 79.8 bits (40), Expect = 1e-11 Identities = 62/68 (91%), Gaps = 1/68 (1%) Strand = Plus / Minus Query: 314 atgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggctgccgaata 373 ||||||||||| |||||| |||||||||||||||||||| | |||||| | ||||||||| Sbjct: 10159884 atgaataaatttgctttg-tcgaaatccctataatgagtagtatttgctgttgccgaata 10159826 Query: 374 aaccaact 381 |||||||| Sbjct: 10159825 aaccaact 10159818 Score = 71.9 bits (36), Expect = 3e-09 Identities = 96/114 (84%), Gaps = 9/114 (7%) Strand = Plus / Minus Query: 408 ggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatctcgtcaaga 467 |||||||||||||||||||||| ||||| |||||||||||| ||||| | |||| Sbjct: 10159803 ggcatgaggttcagtatcataatggtttcttcgtagtaacgc------atctcatgaaga 10159750 Query: 468 actc-tttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaac 520 |||| ||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 10159749 actcttttgtactttgaaaacggacat--ggatgtgtttttgtgctttgaaaac 10159698
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 654 bits (330), Expect = 0.0 Identities = 455/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Plus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 88940 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 88999 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 89000 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 89059 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 89060 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 89118 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 89119 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagataggataagat 89178 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 89179 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 89238 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 89239 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 89298 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 89299 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 89358 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 89359 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 89418 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 89419 gttattccccgcttacct 89436 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 88805 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 88863 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 88864 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 88922
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_D04 Length = 143407 Score = 654 bits (330), Expect = 0.0 Identities = 455/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Plus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 14916 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 14975 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 14976 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 15035 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 15036 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 15094 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 15095 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagataggataagat 15154 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 15155 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 15214 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 15215 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 15274 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 15275 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 15334 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 15335 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 15394 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 15395 gttattccccgcttacct 15412 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 14781 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 14839 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 14840 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 14898
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 654 bits (330), Expect = 0.0 Identities = 455/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Minus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 145394 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 145335 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 145334 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 145275 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 145274 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 145216 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 145215 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 145156 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 145155 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 145096 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 145095 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 145036 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct: 145035 acccgttcgaacttaagtagacgatcagttggtacttttcttgcgagtttccttagccca 144976 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 144975 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 144916 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 144915 gttattccccgcttacct 144898 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Minus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 145528 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 145470 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 145469 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 145411
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 654 bits (330), Expect = 0.0 Identities = 455/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Minus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 53156 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 53097 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 53096 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 53037 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 53036 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 52978 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 52977 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 52918 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 52917 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 52858 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 52857 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 52798 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct: 52797 acccgttcgaacttaagtagacgatcagttggtacttttcttgcgagtttccttagccca 52738 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 52737 ctcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataag 52678 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 52677 gttattccccgcttacct 52660 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Minus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 53290 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 53232 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 53231 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 53173
>dbj|AK072149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128P04, full insert sequence Length = 2475 Score = 654 bits (330), Expect = 0.0 Identities = 455/498 (91%), Gaps = 1/498 (0%) Strand = Plus / Minus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 807 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 748 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 747 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 688 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 687 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 629 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 628 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 569 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 568 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 509 Query: 459 tcgtcaagaactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaa 518 || || |||||||||||| |||||||||| ||||| |||| |||||||||||||||||| Sbjct: 508 tcatccagaactctttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaaa 449 Query: 519 actctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccca 578 || | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 448 acccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccca 389 Query: 579 cttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 || ||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 388 ctcttcttcttccttatcctaggggtatactttaccagtttgaaacttgtcataaataag 329 Query: 639 tttattccccgcctacct 656 ||||||||||| ||||| Sbjct: 328 gttattccccgcttacct 311 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Minus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 942 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 884 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 883 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 825
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 648 bits (327), Expect = 0.0 Identities = 456/499 (91%), Gaps = 2/499 (0%) Strand = Plus / Plus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 78290 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 78349 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 78350 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 78409 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 78410 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 78468 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 78469 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 78528 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 78529 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 78588 Query: 459 tcgtcaagaactcttt-gtgctttgaaaacagacatagggatacgtttttgtgctttgaa 517 || || |||||||||| || |||||||||| ||||| |||| ||||||||||||||||| Sbjct: 78589 tcatccagaactcttttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaa 78648 Query: 518 aactctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccc 577 ||| | |||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 78649 aacccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccc 78708 Query: 578 acttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataa 637 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 78709 actcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataa 78768 Query: 638 gtttattccccgcctacct 656 | ||||||||||| ||||| Sbjct: 78769 ggttattccccgcttacct 78787 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 78154 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 78212 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 78213 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 78271
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 648 bits (327), Expect = 0.0 Identities = 456/499 (91%), Gaps = 2/499 (0%) Strand = Plus / Plus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 12354 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 12413 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 12414 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 12473 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 12474 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 12532 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 12533 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 12592 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 12593 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 12652 Query: 459 tcgtcaagaactcttt-gtgctttgaaaacagacatagggatacgtttttgtgctttgaa 517 || || |||||||||| || |||||||||| ||||| |||| ||||||||||||||||| Sbjct: 12653 tcatccagaactcttttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaa 12712 Query: 518 aactctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccc 577 ||| | |||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 12713 aacccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccc 12772 Query: 578 acttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataa 637 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 12773 actcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataa 12832 Query: 638 gtttattccccgcctacct 656 | ||||||||||| ||||| Sbjct: 12833 ggttattccccgcttacct 12851 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 12218 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 12276 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 12277 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 12335
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 648 bits (327), Expect = 0.0 Identities = 456/499 (91%), Gaps = 2/499 (0%) Strand = Plus / Plus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 10371898 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 10371957 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 10371958 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 10372017 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 10372018 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 10372076 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 10372077 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 10372136 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 10372137 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 10372196 Query: 459 tcgtcaagaactcttt-gtgctttgaaaacagacatagggatacgtttttgtgctttgaa 517 || || |||||||||| || |||||||||| ||||| |||| ||||||||||||||||| Sbjct: 10372197 tcatccagaactcttttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaa 10372256 Query: 518 aactctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccc 577 ||| | |||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 10372257 aacccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccc 10372316 Query: 578 acttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataa 637 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 10372317 actcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataa 10372376 Query: 638 gtttattccccgcctacct 656 | ||||||||||| ||||| Sbjct: 10372377 ggttattccccgcttacct 10372395 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 10371762 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 10371820 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10371821 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 10371879
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 648 bits (327), Expect = 0.0 Identities = 456/499 (91%), Gaps = 2/499 (0%) Strand = Plus / Plus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 10377937 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 10377996 Query: 219 tatgacacatgcnnnnnnnnatagggaaactacgtcctcgagctcgaggtctgaatttct 278 ||||||||||| || || |||||||||||||||| |||||||||||||| | Sbjct: 10377997 tatgacacatggttttttttatgggagaactacgtcctcgagcccgaggtctgaatttat 10378056 Query: 279 tcataatagtactcctactgacttcggctttagtaatgaataaattcgctttggtcgaaa 338 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct: 10378057 tcataatagtactcctactgacttcggctttagtgatgaataaatttgctttg-tcgaaa 10378115 Query: 339 tccctataatgagttgcatttgcggctgccgaataaaccaactttaagatgggataagat 398 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 10378116 tccctataatgagtagcatttgctgctgccgaataaaccaactttaagatgggataagat 10378175 Query: 399 gctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatc 458 |||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||| Sbjct: 10378176 gctcgataaggcatgaggttcaatatcataacagtttcttcgtagtaacgccaacgaatc 10378235 Query: 459 tcgtcaagaactcttt-gtgctttgaaaacagacatagggatacgtttttgtgctttgaa 517 || || |||||||||| || |||||||||| ||||| |||| ||||||||||||||||| Sbjct: 10378236 tcatccagaactcttttgtactttgaaaacggacatgtggatgcgtttttgtgctttgaa 10378295 Query: 518 aactctctcgaacttaagtagacgatcggttggaactttccttgcgagtttccttagccc 577 ||| | |||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 10378296 aacccgttcgaacttaagtagacgatcggttggtacttttcttgcgagtttccttagccc 10378355 Query: 578 acttttcttcttctttatcctagggatatactttactagtttgaaacttgtcataaataa 637 ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 10378356 actcttcttcttctttatcctaggggtatactttaccagtttgaaacttgtcataaataa 10378415 Query: 638 gtttattccccgcctacct 656 | ||||||||||| ||||| Sbjct: 10378416 ggttattccccgcttacct 10378434 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 10377801 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 10377859 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10377860 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 10377918
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 571 bits (288), Expect = e-159 Identities = 390/422 (92%), Gaps = 4/422 (0%) Strand = Plus / Plus Query: 246 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 305 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 81914 aactacgtcctcgagctcgaggtctgaattttttcataatagtactcctactgacttcgg 81973 Query: 306 ctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggct 365 ||||||| ||||||||||||| |||| |||||||||||||||||||| |||||||| ||| Sbjct: 81974 ctttagtgatgaataaattcgttttg-tcgaaatccctataatgagtagcatttgctgct 82032 Query: 366 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 425 ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 82033 gccgaataaaccaactttaagatgggatacgatgctcgataaggcatgagattcagtatc 82092 Query: 426 ataacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaa 485 ||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 82093 ataacggtttcctcgtagtaacgccagcgaatctcatctagaactctttgtgctttgaaa 82152 Query: 486 acagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcg 545 ||||||||| | || |||||||||||||||||||| | ||||| ||||||||||||||| Sbjct: 82153 acagacatatgtatgcgtttttgtgctttgaaaacccgttcgaatttaagtagacgatcg 82212 Query: 546 gttggaactttccttgcgagtttccttagcccacttttcttcttctttatcctagggata 605 ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||| || Sbjct: 82213 gttggaacttttcttgcgagttttctcagccc---cttcttcttctttatcctaggggta 82269 Query: 606 tactttactagtttgaaacttgtcataaataagtttattccccgcctacctttactttat 665 |||||||| | |||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 82270 tactttaccaatttgaaacttgtcataaataaggttattacccgcctacctttactttat 82329 Query: 666 tt 667 || Sbjct: 82330 tt 82331 Score = 180 bits (91), Expect = 4e-42 Identities = 111/115 (96%), Gaps = 2/115 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 81685 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 81743 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctatt 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 81744 gttgtaccaagtctgaaaccgagtggatttattttttgtcccatatttttctatt 81798 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Plus Query: 148 actgggaatcgaaatcttagatggatctaaaggttatttagatttctttactatatttag 207 |||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| Sbjct: 81816 actgggaatcgaaatcttagattgatctaaagattattttgatttctttactatatttag 81875 Query: 208 tacaattgttatatgacacat 228 |||||||||||||| |||||| Sbjct: 81876 tacaattgttatattacacat 81896
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 571 bits (288), Expect = e-159 Identities = 390/422 (92%), Gaps = 4/422 (0%) Strand = Plus / Plus Query: 246 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 305 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 81944 aactacgtcctcgagctcgaggtctgaattttttcataatagtactcctactgacttcgg 82003 Query: 306 ctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggct 365 ||||||| ||||||||||||| |||| |||||||||||||||||||| |||||||| ||| Sbjct: 82004 ctttagtgatgaataaattcgttttg-tcgaaatccctataatgagtagcatttgctgct 82062 Query: 366 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 425 ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 82063 gccgaataaaccaactttaagatgggatacgatgctcgataaggcatgagattcagtatc 82122 Query: 426 ataacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaa 485 ||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 82123 ataacggtttcctcgtagtaacgccagcgaatctcatctagaactctttgtgctttgaaa 82182 Query: 486 acagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcg 545 ||||||||| | || |||||||||||||||||||| | ||||| ||||||||||||||| Sbjct: 82183 acagacatatgtatgcgtttttgtgctttgaaaacccgttcgaatttaagtagacgatcg 82242 Query: 546 gttggaactttccttgcgagtttccttagcccacttttcttcttctttatcctagggata 605 ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||| || Sbjct: 82243 gttggaacttttcttgcgagttttctcagccc---cttcttcttctttatcctaggggta 82299 Query: 606 tactttactagtttgaaacttgtcataaataagtttattccccgcctacctttactttat 665 |||||||| | |||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 82300 tactttaccaatttgaaacttgtcataaataaggttattacccgcctacctttactttat 82359 Query: 666 tt 667 || Sbjct: 82360 tt 82361 Score = 180 bits (91), Expect = 4e-42 Identities = 111/115 (96%), Gaps = 2/115 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 81715 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 81773 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctatt 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 81774 gttgtaccaagtctgaaaccgagtggatttattttttgtcccatatttttctatt 81828 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Plus Query: 148 actgggaatcgaaatcttagatggatctaaaggttatttagatttctttactatatttag 207 |||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| Sbjct: 81846 actgggaatcgaaatcttagattgatctaaagattattttgatttctttactatatttag 81905 Query: 208 tacaattgttatatgacacat 228 |||||||||||||| |||||| Sbjct: 81906 tacaattgttatattacacat 81926
>emb|Y00329.1|CHZMRP22 Maize chloroplast rpl22 gene for ribosomal protein L22 Length = 607 Score = 557 bits (281), Expect = e-155 Identities = 390/423 (92%), Gaps = 5/423 (1%) Strand = Plus / Minus Query: 246 aactacgtcctcgagctcgaggtctgaatttctt-cataatagtactcctactgacttcg 304 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 481 aactacgtcctcgagctcgaggtctgaatttttttcataatagtactcctactgacttcg 422 Query: 305 gctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggc 364 |||||||| ||||||||||||| |||| |||||||||||||||||||| |||||||| || Sbjct: 421 gctttagtgatgaataaattcgttttg-tcgaaatccctataatgagtagcatttgctgc 363 Query: 365 tgccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtat 424 |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct: 362 tgccgaataaaccaactttaagatgggatacgatgctcgataaggcatgagattcagtat 303 Query: 425 cataacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaa 484 |||||| |||||||||||||||||||| |||||||| || |||||||||||||||||||| Sbjct: 302 cataacggtttcctcgtagtaacgccagcgaatctcatctagaactctttgtgctttgaa 243 Query: 485 aacagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatc 544 |||||||||| | || |||||||||||||||||||| | ||||| |||||||||||||| Sbjct: 242 aacagacatatgtatgcgtttttgtgctttgaaaacccgttcgaatttaagtagacgatc 183 Query: 545 ggttggaactttccttgcgagtttccttagcccacttttcttcttctttatcctagggat 604 |||||||||||| ||||||||||| || ||||| ||||||||||||||||||||| | Sbjct: 182 ggttggaacttttcttgcgagttttctcagccc---cttcttcttctttatcctaggggt 126 Query: 605 atactttactagtttgaaacttgtcataaataagtttattccccgcctacctttacttta 664 ||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 125 atactttaccaatttgaaacttgtcataaataaggttattacccgcctacctttacttta 66 Query: 665 ttt 667 ||| Sbjct: 65 ttt 63 Score = 97.6 bits (49), Expect = 5e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 156 tcgaaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattg 215 |||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| Sbjct: 571 tcgaaatcttagattgatctaaagaccattttgatttctttactatatttagtacaattg 512 Query: 216 ttatatgacacat 228 |||||| |||||| Sbjct: 511 ttatattacacat 499 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ttgtcccatatttttctatt 133 |||||||||||||||||||| Sbjct: 607 ttgtcccatatttttctatt 588
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 547 bits (276), Expect = e-152 Identities = 387/422 (91%), Gaps = 4/422 (0%) Strand = Plus / Plus Query: 246 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 305 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 3053 aactacgtcctcgagctcgaggtctgaattttttcataatagtactcctactgacttcgg 3112 Query: 306 ctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggct 365 ||||||| ||||||||||| | |||| |||||||||||||||||||| |||||||| ||| Sbjct: 3113 ctttagtgatgaataaatttgttttg-tcgaaatccctataatgagtagcatttgctgct 3171 Query: 366 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 425 ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 3172 gccgaataaaccaactttaagatgggatacgatgctcgataaggcatgagattcagtatc 3231 Query: 426 ataacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaa 485 ||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 3232 ataacggtttcctcgtagtaacgccagcgaatctcatctagaactctttgtgctttgaaa 3291 Query: 486 acagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcg 545 ||||||||| | || |||||||||||||||||||| | ||||| ||||||||||||||| Sbjct: 3292 acagacatatgtatgcgtttttgtgctttgaaaacccgttcgaatttaagtagacgatcg 3351 Query: 546 gttggaactttccttgcgagtttccttagcccacttttcttcttctttatcctagggata 605 ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||| || Sbjct: 3352 gttggaacttttcttgcgagttttctcagccc---cttcttcttctttatcctaggggta 3408 Query: 606 tactttactagtttgaaacttgtcataaataagtttattccccgcctacctttactttat 665 |||||||| | |||||||||||||||||||||| ||||| |||||||| ||||| ||||| Sbjct: 3409 tactttaccaatttgaaacttgtcataaataaggttattacccgcctatctttattttat 3468 Query: 666 tt 667 || Sbjct: 3469 tt 3470 Score = 180 bits (91), Expect = 4e-42 Identities = 111/115 (96%), Gaps = 2/115 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 2826 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 2884 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctatt 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 2885 gttgtaccaagtctgaaaccgagtggatttattttttgtcccatatttttctatt 2939 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Plus Query: 148 actgggaatcgaaatcttagatggatctaaaggttatttagatttctttactatatttag 207 ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| Sbjct: 2955 actgggaatcgaaattttagattgatctaaagattatttagatttctttactatatttag 3014 Query: 208 tacaattgttatatgacacat 228 |||||||||||||| |||||| Sbjct: 3015 tacaattgttatattacacat 3035
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 547 bits (276), Expect = e-152 Identities = 387/422 (91%), Gaps = 4/422 (0%) Strand = Plus / Plus Query: 246 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 305 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 82610 aactacgtcctcgagctcgaggtctgaattttttcataatagtactcctactgacttcgg 82669 Query: 306 ctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggct 365 ||||||| ||||||||||| | |||| |||||||||||||||||||| |||||||| ||| Sbjct: 82670 ctttagtgatgaataaatttgttttg-tcgaaatccctataatgagtagcatttgctgct 82728 Query: 366 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 425 ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 82729 gccgaataaaccaactttaagatgggatacgatgctcgataaggcatgagattcagtatc 82788 Query: 426 ataacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaa 485 ||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 82789 ataacggtttcctcgtagtaacgccagcgaatctcatctagaactctttgtgctttgaaa 82848 Query: 486 acagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcg 545 ||||||||| | || |||||||||||||||||||| | ||||| ||||||||||||||| Sbjct: 82849 acagacatatgtatgcgtttttgtgctttgaaaacccgttcgaatttaagtagacgatcg 82908 Query: 546 gttggaactttccttgcgagtttccttagcccacttttcttcttctttatcctagggata 605 ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||| || Sbjct: 82909 gttggaacttttcttgcgagttttctcagccc---cttcttcttctttatcctaggggta 82965 Query: 606 tactttactagtttgaaacttgtcataaataagtttattccccgcctacctttactttat 665 |||||||| | |||||||||||||||||||||| ||||| |||||||| ||||| ||||| Sbjct: 82966 tactttaccaatttgaaacttgtcataaataaggttattacccgcctatctttattttat 83025 Query: 666 tt 667 || Sbjct: 83026 tt 83027 Score = 180 bits (91), Expect = 4e-42 Identities = 111/115 (96%), Gaps = 2/115 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 82383 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 82441 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctatt 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 82442 gttgtaccaagtctgaaaccgagtggatttattttttgtcccatatttttctatt 82496 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Plus Query: 148 actgggaatcgaaatcttagatggatctaaaggttatttagatttctttactatatttag 207 ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| Sbjct: 82512 actgggaatcgaaattttagattgatctaaagattatttagatttctttactatatttag 82571 Query: 208 tacaattgttatatgacacat 228 |||||||||||||| |||||| Sbjct: 82572 tacaattgttatattacacat 82592
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 525 bits (265), Expect = e-146 Identities = 376/411 (91%), Gaps = 4/411 (0%) Strand = Plus / Minus Query: 246 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 305 |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| Sbjct: 75201 aactacgtcctcgagcccgaggtctgaatttattcataatagtact---actgacttcgg 75145 Query: 306 ctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggct 365 ||||||| ||||||||||| |||||| |||||||||||||||||||| |||||||| ||| Sbjct: 75144 ctttagtgatgaataaatttgctttg-tcgaaatccctataatgagtagcatttgctgct 75086 Query: 366 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 425 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 75085 accgaataaaccaactttaagatgggataagatgctcgataaggcatgaggttcaatatc 75026 Query: 426 ataacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaa 485 ||||||||||| |||||||||||||| |||||||| || |||||||||||| |||||||| Sbjct: 75025 ataacagtttcttcgtagtaacgccaacgaatctcatccagaactctttgtactttgaaa 74966 Query: 486 acagacatagggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcg 545 || ||||| |||| |||||||||||||||||||| | ||||||||||||||| ||||| Sbjct: 74965 acggacatgtggatgcgtttttgtgctttgaaaacccgttcgaacttaagtagatgatcg 74906 Query: 546 gttggaactttccttgcgagtttccttagcccacttttcttcttctttatcctagggata 605 ||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |||| || Sbjct: 74905 gttggtacttttcttgcgagtttccttagcccactcttcttcttctttatcccaggggta 74846 Query: 606 tactttactagtttgaaacttgtcataaataagtttattccccgcctacct 656 |||||||| |||||||||||||| ||||||||| ||||||||||| ||||| Sbjct: 74845 tactttaccagtttgaaacttgttataaataaggttattccccgcttacct 74795 Score = 180 bits (91), Expect = 4e-42 Identities = 114/119 (95%), Gaps = 2/119 (1%) Strand = Plus / Minus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 75423 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 75365 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctattctat 137 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 75364 gttgtaccaagtctgaaaccaagtggatttattttttgtcccatatttttctattctat 75306 Score = 125 bits (63), Expect = 2e-25 Identities = 69/71 (97%) Strand = Plus / Minus Query: 159 aaatcttagatggatctaaaggttatttagatttctttactatatttagtacaattgtta 218 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 75289 aaatcttagatggatctaaagattatttcgatttctttactatatttagtacaattgtta 75230 Query: 219 tatgacacatg 229 ||||||||||| Sbjct: 75229 tatgacacatg 75219
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 448 bits (226), Expect = e-122 Identities = 405/464 (87%), Gaps = 5/464 (1%) Strand = Plus / Minus Query: 195 ttactatatttagtacaattgttatatgacacatgcnnnnnnnnatagggaaactacgtc 254 ||||||||||||||| ||||||||||||||||||| || || ||||||||| Sbjct: 18328526 ttactatatttagtagaattgttatatgacacatggttttatttatgggagaactacgtc 18328467 Query: 255 ctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcggctttagtaa 314 ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| | Sbjct: 18328466 ctcgagcctgaggtctgaatttattcataatagtactcctattgacttcggctttagtga 18328407 Query: 315 tgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggctgccgaataa 374 |||| ||||| |||||| ||||||||| |||||||||| |||||||| |||||||||||| Sbjct: 18328406 tgaacaaatttgctttg-tcgaaatccttataatgagtagcatttgctgctgccgaataa 18328348 Query: 375 accaactttaagatgggataagatgctcgatagggcatgaggttcagtatcataacagtt 434 |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 18328347 accaactttaagatgggataagatgctcgataaggcatgaggtttaatatcataacagtt 18328288 Query: 435 tcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaacagacata 494 || |||||||||| ||| | |||||| || | |||||||||| |||||||||| ||||| Sbjct: 18328287 tcttcgtagtaacaccaacaaatctcatccataactctttgtactttgaaaacggacatg 18328228 Query: 495 gggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcggttgg--aa 552 |||| ||||| |||||||||||| | |||| |||||||||||||||||||||| | Sbjct: 18328227 tggatgtgttttcgtgctttgaaaa--ccctcgtacttaagtagacgatcggttggtata 18328170 Query: 553 ctttccttgcgagtttccttagcccacttttcttcttctttatcctagggatatacttta 612 |||| ||| ||||||| || ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 18328169 cttttcttctgagtttctttggcccactcttcttcttctttatcctaggggtatacttta 18328110 Query: 613 ctagtttgaaacttgtcataaataagtttattccccgcctacct 656 |||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 18328109 acagtttgaaacttgtcataaataagattattccccgcttacct 18328066
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 448 bits (226), Expect = e-122 Identities = 405/464 (87%), Gaps = 5/464 (1%) Strand = Plus / Minus Query: 195 ttactatatttagtacaattgttatatgacacatgcnnnnnnnnatagggaaactacgtc 254 ||||||||||||||| ||||||||||||||||||| || || ||||||||| Sbjct: 18254847 ttactatatttagtagaattgttatatgacacatggttttatttatgggagaactacgtc 18254788 Query: 255 ctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcggctttagtaa 314 ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| | Sbjct: 18254787 ctcgagcctgaggtctgaatttattcataatagtactcctattgacttcggctttagtga 18254728 Query: 315 tgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggctgccgaataa 374 |||| ||||| |||||| ||||||||| |||||||||| |||||||| |||||||||||| Sbjct: 18254727 tgaacaaatttgctttg-tcgaaatccttataatgagtagcatttgctgctgccgaataa 18254669 Query: 375 accaactttaagatgggataagatgctcgatagggcatgaggttcagtatcataacagtt 434 |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 18254668 accaactttaagatgggataagatgctcgataaggcatgaggtttaatatcataacagtt 18254609 Query: 435 tcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaacagacata 494 || |||||||||| ||| | |||||| || | |||||||||| |||||||||| ||||| Sbjct: 18254608 tcttcgtagtaacaccaacaaatctcatccataactctttgtactttgaaaacggacatg 18254549 Query: 495 gggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcggttgg--aa 552 |||| ||||| |||||||||||| | |||| |||||||||||||||||||||| | Sbjct: 18254548 tggatgtgttttcgtgctttgaaaa--ccctcgtacttaagtagacgatcggttggtata 18254491 Query: 553 ctttccttgcgagtttccttagcccacttttcttcttctttatcctagggatatacttta 612 |||| ||| ||||||| || ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 18254490 cttttcttctgagtttctttggcccactcttcttcttctttatcctaggggtatacttta 18254431 Query: 613 ctagtttgaaacttgtcataaataagtttattccccgcctacct 656 |||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 18254430 acagtttgaaacttgtcataaataagattattccccgcttacct 18254387
>emb|AL831799.3|CNS08CAC Oryza sativa chromosome 12, . BAC OSJNBa0087A02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 177034 Score = 448 bits (226), Expect = e-122 Identities = 405/464 (87%), Gaps = 5/464 (1%) Strand = Plus / Plus Query: 195 ttactatatttagtacaattgttatatgacacatgcnnnnnnnnatagggaaactacgtc 254 ||||||||||||||| ||||||||||||||||||| || || ||||||||| Sbjct: 42468 ttactatatttagtagaattgttatatgacacatggttttatttatgggagaactacgtc 42527 Query: 255 ctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcggctttagtaa 314 ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| | Sbjct: 42528 ctcgagcctgaggtctgaatttattcataatagtactcctattgacttcggctttagtga 42587 Query: 315 tgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggctgccgaataa 374 |||| ||||| |||||| ||||||||| |||||||||| |||||||| |||||||||||| Sbjct: 42588 tgaacaaatttgctttg-tcgaaatccttataatgagtagcatttgctgctgccgaataa 42646 Query: 375 accaactttaagatgggataagatgctcgatagggcatgaggttcagtatcataacagtt 434 |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 42647 accaactttaagatgggataagatgctcgataaggcatgaggtttaatatcataacagtt 42706 Query: 435 tcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaaacagacata 494 || |||||||||| ||| | |||||| || | |||||||||| |||||||||| ||||| Sbjct: 42707 tcttcgtagtaacaccaacaaatctcatccataactctttgtactttgaaaacggacatg 42766 Query: 495 gggatacgtttttgtgctttgaaaactctctcgaacttaagtagacgatcggttgg--aa 552 |||| ||||| |||||||||||| | |||| |||||||||||||||||||||| | Sbjct: 42767 tggatgtgttttcgtgctttgaaaa--ccctcgtacttaagtagacgatcggttggtata 42824 Query: 553 ctttccttgcgagtttccttagcccacttttcttcttctttatcctagggatatacttta 612 |||| ||| ||||||| || ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 42825 cttttcttctgagtttctttggcccactcttcttcttctttatcctaggggtatacttta 42884 Query: 613 ctagtttgaaacttgtcataaataagtttattccccgcctacct 656 |||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 42885 acagtttgaaacttgtcataaataagattattccccgcttacct 42928
>emb|Y00340.1|CHZMRPS3 Maize chloroplast rps3 gene for ribosomal protein S3 Length = 731 Score = 180 bits (91), Expect = 4e-42 Identities = 111/115 (96%), Gaps = 2/115 (1%) Strand = Plus / Minus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaa-ggaatggtgtttttgg 78 ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 131 cctgtagaccttcag-aataattttttggttgtgcgaaccaaaaggaatggtgattttgg 73 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatatttttctatt 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 72 gttgtaccaagtctgaaaccgagtggatttattttttgtcccatatttttctatt 18
>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome Length = 569630 Score = 168 bits (85), Expect = 2e-38 Identities = 112/121 (92%) Strand = Plus / Plus Query: 332 gtcgaaatccctataatgagttgcatttgcggctgccgaataaaccaactttaagatggg 391 ||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| Sbjct: 212538 gtcgaaatccctataatgaatagcatttgctgctgccgaataaaccaactttaagatggg 212597 Query: 392 ataagatgctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgcca 451 ||||||||||| ||| ||||||||| ||||||||||||| |||||||| |||||| |||| Sbjct: 212598 ataagatgctcaataaggcatgagggtcagtatcataacggtttcctcctagtaaggcca 212657 Query: 452 c 452 | Sbjct: 212658 c 212658
>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete genome Length = 701046 Score = 168 bits (85), Expect = 2e-38 Identities = 112/121 (92%) Strand = Plus / Plus Query: 332 gtcgaaatccctataatgagttgcatttgcggctgccgaataaaccaactttaagatggg 391 ||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| Sbjct: 553560 gtcgaaatccctataatgaatagcatttgctgctgccgaataaaccaactttaagatggg 553619 Query: 392 ataagatgctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgcca 451 ||||||||||| ||| ||||||||| ||||||||||||| |||||||| |||||| |||| Sbjct: 553620 ataagatgctcaataaggcatgagggtcagtatcataacggtttcctcctagtaaggcca 553679 Query: 452 c 452 | Sbjct: 553680 c 553680
>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome Length = 569553 Score = 168 bits (85), Expect = 2e-38 Identities = 112/121 (92%) Strand = Plus / Plus Query: 332 gtcgaaatccctataatgagttgcatttgcggctgccgaataaaccaactttaagatggg 391 ||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| Sbjct: 456837 gtcgaaatccctataatgaatagcatttgctgctgccgaataaaccaactttaagatggg 456896 Query: 392 ataagatgctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgcca 451 ||||||||||| ||| ||||||||| ||||||||||||| |||||||| |||||| |||| Sbjct: 456897 ataagatgctcaataaggcatgagggtcagtatcataacggtttcctcctagtaaggcca 456956 Query: 452 c 452 | Sbjct: 456957 c 456957
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 168 bits (85), Expect = 2e-38 Identities = 112/121 (92%) Strand = Plus / Plus Query: 332 gtcgaaatccctataatgagttgcatttgcggctgccgaataaaccaactttaagatggg 391 ||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| Sbjct: 230072 gtcgaaatccctataatgaatagcatttgctgctgccgaataaaccaactttaagatggg 230131 Query: 392 ataagatgctcgatagggcatgaggttcagtatcataacagtttcctcgtagtaacgcca 451 ||||||||||| ||| ||||||||| ||||||||||||| |||||||| |||||| |||| Sbjct: 230132 ataagatgctcaataaggcatgagggtcagtatcataacggtttcctcctagtaaggcca 230191 Query: 452 c 452 | Sbjct: 230192 c 230192
>emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009K15, complete sequence Length = 185021 Score = 141 bits (71), Expect = 4e-30 Identities = 86/91 (94%) Strand = Plus / Minus Query: 370 aataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatcataa 429 ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 34272 aataaaccaactttaagatgggataagatgctcgatatggcatgaggttcaatatcataa 34213 Query: 430 cagtttcctcgtagtaacgccaccgaatctc 460 |||||| |||||||||||||| |||||||| Sbjct: 34212 tagtttcttcgtagtaacgccaacgaatctc 34182
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 127 bits (64), Expect = 5e-26 Identities = 170/204 (83%), Gaps = 1/204 (0%) Strand = Plus / Plus Query: 245 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 304 |||||||||||||||||||||||| | |||||||||| | | |||| || | |||||||| Sbjct: 86299 aaactacgtcctcgagctcgaggtttcaatttcttcacagtcgtacccccattgacttcg 86358 Query: 305 gctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggc 364 |||||| |||||| |||||| |||| | | ||| || ||| || | | |||||||| || Sbjct: 86359 gctttactaatgactaaattggcttcgctggaac-ccatattataactagcatttgctgc 86417 Query: 365 tgccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtat 424 ||| ||||||||||| || || ||||||||| ||||||||||||||||||| | ||||| Sbjct: 86418 tgcagaataaaccaatttcaaaatgggataacatgctcgatagggcatgagttctagtat 86477 Query: 425 cataacagtttcctcgtagtaacg 448 ||||| |||||||| ||| |||| Sbjct: 86478 cataagcgtttcctcataggaacg 86501 Score = 93.7 bits (47), Expect = 7e-16 Identities = 91/103 (88%), Gaps = 2/103 (1%) Strand = Plus / Plus Query: 22 tgtagaccttcagnaataattttttggttgtgcgaaccaaagg-aatggtgtttttgggt 80 |||| |||||||| |||||||||||||||||| ||||||||| |||| || |||||| Sbjct: 86045 tgtaaaccttcag-aataattttttggttgtgaaaaccaaagggaatgatgaccttgggt 86103 Query: 81 tgtaccaagtctaaaaccgagtggatttattttttgtcccata 123 |||||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 86104 tgtacccagtctgaaaccaagtggatttattttttgtcccata 86146
>gb|DQ069462.1| Yucca schidigera ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 660 Score = 121 bits (61), Expect = 3e-24 Identities = 80/85 (94%), Gaps = 1/85 (1%) Strand = Plus / Minus Query: 39 aattttttggttgtgcgaaccaaa-ggaatggtgtttttgggttgtaccaagtctaaaac 97 |||||||||||||||||||||||| |||||| || |||||||||||||||||||| |||| Sbjct: 85 aattttttggttgtgcgaaccaaaaggaatgatgattttgggttgtaccaagtctgaaac 26 Query: 98 cgagtggatttattttttgtcccat 122 | ||||||||||||||||||||||| Sbjct: 25 caagtggatttattttttgtcccat 1
>gb|DQ069461.1| Typha latifolia ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 654 Score = 119 bits (60), Expect = 1e-23 Identities = 82/88 (93%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 36 aataattttttggttgtgcgaaccaaa-ggaatggtgtttttgggttgtaccaagtctaa 94 ||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| | Sbjct: 88 aataattttttggttgtgcgaaccaaaaggaatgatgactttgggttgtaccaagtctga 29 Query: 95 aaccgagtggatttattttttgtcccat 122 |||| ||||||||||||||||||||||| Sbjct: 28 aaccaagtggatttattttttgtcccat 1
>gb|M81884.1|EPFCPCG Epifagus virginiana chloroplast, complete genome Length = 70028 Score = 113 bits (57), Expect = 8e-22 Identities = 82/89 (92%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaa-ggaatggtgtttttgggttgtaccaagtctaa 94 ||||||||||||||||||| ||||||| |||||| || |||||||||||||||| |||| Sbjct: 19394 aataattttttggttgtgcaaaccaaaaggaatgatgactttgggttgtaccaagcctaa 19453 Query: 95 aaccgagtggatttattttttgtcccata 123 |||| |||||||||||||||||||||||| Sbjct: 19454 aaccaagtggatttattttttgtcccata 19482
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 113 bits (57), Expect = 8e-22 Identities = 82/89 (92%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaagg-aatggtgtttttgggttgtaccaagtctaa 94 ||||||||||||||||||| ||||||||| |||| || |||||||||||||||||| | Sbjct: 85251 aataattttttggttgtgcaaaccaaagggaatgatgaccttgggttgtaccaagtctga 85310 Query: 95 aaccgagtggatttattttttgtcccata 123 ||||||||||||||||||||||||||||| Sbjct: 85311 aaccgagtggatttattttttgtcccata 85339 Score = 89.7 bits (45), Expect = 1e-14 Identities = 151/185 (81%), Gaps = 1/185 (0%) Strand = Plus / Plus Query: 245 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 304 |||||||||||||||||||||||| | |||||||||| ||||||| | |||||||| Sbjct: 85507 aaactacgtcctcgagctcgaggttttaatttcttcacgatagtaccctcgctgacttca 85566 Query: 305 gctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggc 364 |||||| |||| | |||||| | || | | ||| ||| ||| | | | |||||||| || Sbjct: 85567 gctttactaataactaaatttgattcgttggaa-tccatattgtaactagcatttgctgc 85625 Query: 365 tgccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtat 424 ||| ||||||||||| || || ||||||||| |||||||||| |||||||| | ||||| Sbjct: 85626 tgcagaataaaccaatttaaaaatgggataacatgctcgataaggcatgagttctagtat 85685 Query: 425 cataa 429 ||||| Sbjct: 85686 cataa 85690
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 111 bits (56), Expect = 3e-21 Identities = 168/204 (82%), Gaps = 1/204 (0%) Strand = Plus / Plus Query: 245 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 304 |||||||||||||||||||||||| | |||||||||| | |||||| | | |||||||| Sbjct: 86052 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtacctccattgacttcg 86111 Query: 305 gctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggc 364 |||||| |||||| |||||| |||| | | | || || ||| | | | |||||||| || Sbjct: 86112 gctttactaatgactaaattggcttcgct-ggaacccatattgtaactagcatttgctgc 86170 Query: 365 tgccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtat 424 ||| ||||||| ||| || || ||||||||| ||||||||||||||||||| | ||||| Sbjct: 86171 tgcagaataaatcaatttcaaaatgggataacatgctcgatagggcatgagttctagtat 86230 Query: 425 cataacagtttcctcgtagtaacg 448 ||||| |||||||| ||| |||| Sbjct: 86231 cataagcgtttcctcataggaacg 86254 Score = 93.7 bits (47), Expect = 7e-16 Identities = 91/103 (88%), Gaps = 2/103 (1%) Strand = Plus / Plus Query: 22 tgtagaccttcagnaataattttttggttgtgcgaaccaaagg-aatggtgtttttgggt 80 |||| |||||||| |||||||||||||||||| ||||||||| |||| || |||||| Sbjct: 85798 tgtaaaccttcag-aataattttttggttgtgaaaaccaaagggaatgatgaccttgggt 85856 Query: 81 tgtaccaagtctaaaaccgagtggatttattttttgtcccata 123 |||||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 85857 tgtacccagtctgaaaccaagtggatttattttttgtcccata 85899
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 111 bits (56), Expect = 3e-21 Identities = 168/204 (82%), Gaps = 1/204 (0%) Strand = Plus / Plus Query: 245 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 304 |||||||||||||||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 85177 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtaccttcattgacttcg 85236 Query: 305 gctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggc 364 |||||| |||||| |||||| | ||| || | || || ||| | | | |||||||| || Sbjct: 85237 gctttactaatgactaaattgg-tttcgttggaacccatattgtaactagcatttgctgc 85295 Query: 365 tgccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtat 424 ||| ||||||||||| || || ||||||||| ||||||||||||||||||| | ||||| Sbjct: 85296 tgcagaataaaccaatttcaaaatgggataacatgctcgatagggcatgagttctagtat 85355 Query: 425 cataacagtttcctcgtagtaacg 448 ||||| |||||||| ||| |||| Sbjct: 85356 cataagcgtttcctcataggaacg 85379 Score = 81.8 bits (41), Expect = 3e-12 Identities = 78/89 (87%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaagg-aatggtgtttttgggttgtaccaagtctaa 94 |||||||||| ||||||| ||||||||| |||| || |||||||||||| ||||| | Sbjct: 84936 aataatttttgggttgtgaaaaccaaagggaatgatgaccttgggttgtacccagtctga 84995 Query: 95 aaccgagtggatttattttttgtcccata 123 |||| |||||||||||||||||||||||| Sbjct: 84996 aaccaagtggatttattttttgtcccata 85024
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 111 bits (56), Expect = 3e-21 Identities = 168/204 (82%), Gaps = 1/204 (0%) Strand = Plus / Plus Query: 245 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 304 |||||||||||||||||||||||| | |||||||||| | |||||| | | |||||||| Sbjct: 86050 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtacctccattgacttcg 86109 Query: 305 gctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggc 364 |||||| |||||| |||||| |||| | | | || || ||| | | | |||||||| || Sbjct: 86110 gctttactaatgactaaattggcttcgct-ggaacccatattgtaactagcatttgctgc 86168 Query: 365 tgccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtat 424 ||| ||||||| ||| || || ||||||||| ||||||||||||||||||| | ||||| Sbjct: 86169 tgcagaataaatcaatttcaaaatgggataacatgctcgatagggcatgagttctagtat 86228 Query: 425 cataacagtttcctcgtagtaacg 448 ||||| |||||||| ||| |||| Sbjct: 86229 cataagcgtttcctcataggaacg 86252 Score = 93.7 bits (47), Expect = 7e-16 Identities = 91/103 (88%), Gaps = 2/103 (1%) Strand = Plus / Plus Query: 22 tgtagaccttcagnaataattttttggttgtgcgaaccaaagg-aatggtgtttttgggt 80 |||| |||||||| |||||||||||||||||| ||||||||| |||| || |||||| Sbjct: 85796 tgtaaaccttcag-aataattttttggttgtgaaaaccaaagggaatgatgaccttgggt 85854 Query: 81 tgtaccaagtctaaaaccgagtggatttattttttgtcccata 123 |||||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 85855 tgtacccagtctgaaaccaagtggatttattttttgtcccata 85897
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 111 bits (56), Expect = 3e-21 Identities = 168/204 (82%), Gaps = 1/204 (0%) Strand = Plus / Plus Query: 245 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 304 |||||||||||||||||||||||| | |||||||||| | |||||| | | |||||||| Sbjct: 85821 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtacctccattgacttcg 85880 Query: 305 gctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggc 364 |||||| |||||| |||||| |||| | | | || || ||| | | | |||||||| || Sbjct: 85881 gctttactaatgactaaattggcttcgct-ggaacccatattgtaactagcatttgctgc 85939 Query: 365 tgccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtat 424 ||| ||||||||||| || || ||||||||| |||| |||||||||||||| | ||||| Sbjct: 85940 tgcagaataaaccaatttcaaaatgggataacatgcccgatagggcatgagttctagtat 85999 Query: 425 cataacagtttcctcgtagtaacg 448 ||||| |||||||| ||| |||| Sbjct: 86000 cataagcgtttcctcataggaacg 86023 Score = 81.8 bits (41), Expect = 3e-12 Identities = 78/89 (87%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaagg-aatggtgtttttgggttgtaccaagtctaa 94 |||||||||||||||||| ||||||||| |||| || ||| |||||||| ||||| | Sbjct: 85580 aataattttttggttgtgaaaaccaaagggaatgatgaccttgagttgtacccagtctga 85639 Query: 95 aaccgagtggatttattttttgtcccata 123 |||| |||||||||||||||||||||||| Sbjct: 85640 aaccaagtggatttattttttgtcccata 85668
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 111 bits (56), Expect = 3e-21 Identities = 168/204 (82%), Gaps = 1/204 (0%) Strand = Plus / Plus Query: 245 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 304 |||||||||||||||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 85189 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtaccttcattgacttcg 85248 Query: 305 gctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggc 364 |||||| |||||| |||||| | ||| || | || || ||| | | | |||||||| || Sbjct: 85249 gctttactaatgactaaattgg-tttcgttggaacccatattgtaactagcatttgctgc 85307 Query: 365 tgccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtat 424 ||| ||||||||||| || || ||||||||| ||||||||||||||||||| | ||||| Sbjct: 85308 tgcagaataaaccaatttcaaaatgggataacatgctcgatagggcatgagttctagtat 85367 Query: 425 cataacagtttcctcgtagtaacg 448 ||||| |||||||| ||| |||| Sbjct: 85368 cataagcgtttcctcataggaacg 85391 Score = 81.8 bits (41), Expect = 3e-12 Identities = 78/89 (87%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaagg-aatggtgtttttgggttgtaccaagtctaa 94 |||||||||| ||||||| ||||||||| |||| || |||||||||||| ||||| | Sbjct: 84948 aataatttttgggttgtgaaaaccaaagggaatgatgaccttgggttgtacccagtctga 85007 Query: 95 aaccgagtggatttattttttgtcccata 123 |||| |||||||||||||||||||||||| Sbjct: 85008 aaccaagtggatttattttttgtcccata 85036
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 109 bits (55), Expect = 1e-20 Identities = 89/99 (89%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaagg-aatggtgtttttgggttgtaccaagtctaa 94 ||||| ||||||||||||||||||||||| || | || ||||||||| ||||||||| | Sbjct: 83024 aataactttttggttgtgcgaaccaaagggaaagatgactttgggttgcaccaagtctga 83083 Query: 95 aaccgagtggatttattttttgtcccatatttttctatt 133 |||| ||||||||||||||||||||||||| |||||||| Sbjct: 83084 aaccaagtggatttattttttgtcccatatctttctatt 83122 Score = 67.9 bits (34), Expect = 4e-08 Identities = 88/106 (83%) Strand = Plus / Plus Query: 354 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 413 |||||||| ||||| || |||||||| ||||| || ||| ||||||||||||| ||||| Sbjct: 83378 gcatttgctgctgcagagtaaaccaattttaaaataggaaaagatgctcgataaggcatc 83437 Query: 414 aggttcagtatcataacagtttcctcgtagtaacgccaccgaatct 459 || | |||||||||| |||||||| ||| |||||| ||||||| Sbjct: 83438 agttctagtatcataattgtttcctcataggaacgcccacgaatct 83483
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 107 bits (54), Expect = 5e-20 Identities = 82/90 (91%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaa-ggaatggtgtttttgggttgtaccaagtctaa 94 ||||||||||||||||||||||||||| |||| | || ||||||||||||||||||| | Sbjct: 89045 aataattttttggttgtgcgaaccaaaaggaacgatgactttgggttgtaccaagtctga 89104 Query: 95 aaccgagtggatttattttttgtcccatat 124 |||| |||||||||||||| |||||||||| Sbjct: 89105 aaccaagtggatttattttctgtcccatat 89134 Score = 65.9 bits (33), Expect = 2e-07 Identities = 109/133 (81%), Gaps = 1/133 (0%) Strand = Plus / Plus Query: 297 tgacttcggctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgca 356 |||||||||||||| |||| ||||||| |||| || ||| |||||| ||| | ||| Sbjct: 89310 tgacttcggctttactaataaataaatcagcttctttc-aaacccctattgtgactagca 89368 Query: 357 tttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatgagg 416 ||||| ||||| |||||||| || || || ||||| ||| |||||||||| |||||||| Sbjct: 89369 tttgctgctgcggaataaactaatttgaaaatggggtaacatgctcgataaggcatgagt 89428 Query: 417 ttcagtatcataa 429 | ||||||||||| Sbjct: 89429 tccagtatcataa 89441
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 107 bits (54), Expect = 5e-20 Identities = 89/98 (90%), Gaps = 2/98 (2%) Strand = Plus / Plus Query: 27 accttcagnaataattttttggttgtgcgaaccaaag-gaatggtgtttttgggttgtac 85 |||||||| |||| |||||||||||||| |||||||| ||||| || |||||||||||| Sbjct: 83387 accttcag-aatacttttttggttgtgcaaaccaaagagaatgatgactttgggttgtac 83445 Query: 86 caagtctaaaaccgagtggatttattttttgtcccata 123 ||||||| ||||| |||||||||||||||||||||||| Sbjct: 83446 caagtctgaaaccaagtggatttattttttgtcccata 83483 Score = 40.1 bits (20), Expect = 9.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 369 gaataaaccaactttaagatgggataagatgctcgatagggcat 412 ||||||||||| || || ||||||||| || ||||||| ||||| Sbjct: 83762 gaataaaccaatttaaaaatgggataacatcctcgataaggcat 83805
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 105 bits (53), Expect = 2e-19 Identities = 81/89 (91%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaag-gaatggtgtttttgggttgtaccaagtctaa 94 ||||||||||||||||||| |||||||| ||||| || |||||||||||||||||| | Sbjct: 88249 aataattttttggttgtgcaaaccaaagcgaatgatgaccttgggttgtaccaagtctga 88308 Query: 95 aaccgagtggatttattttttgtcccata 123 |||| |||||||||||||||||||||||| Sbjct: 88309 aacccagtggatttattttttgtcccata 88337 Score = 48.1 bits (24), Expect = 0.039 Identities = 33/36 (91%) Strand = Plus / Plus Query: 246 aactacgtcctcgagctcgaggtctgaatttcttca 281 ||||||||||||||||||||||| | ||||| |||| Sbjct: 88506 aactacgtcctcgagctcgaggtttcaattttttca 88541
>gb|DQ069459.1| Nuphar advena ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 654 Score = 103 bits (52), Expect = 8e-19 Identities = 80/88 (90%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 36 aataattttttggttgtgcgaaccaaa-ggaatggtgtttttgggttgtaccaagtctaa 94 ||||||||||||||||||||||||||| |||| | || ||||||||||||||||||| | Sbjct: 88 aataattttttggttgtgcgaaccaaaaggaacgatgactttgggttgtaccaagtctga 29 Query: 95 aaccgagtggatttattttttgtcccat 122 |||| |||||||||||||| |||||||| Sbjct: 28 aaccaagtggatttattttctgtcccat 1
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 103 bits (52), Expect = 8e-19 Identities = 80/88 (90%), Gaps = 1/88 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaagg-aatggtgtttttgggttgtaccaagtctaa 94 ||||||||||||||||||||||||||||| |||| || |||||||||||||||||| | Sbjct: 83275 aataattttttggttgtgcgaaccaaagggaatgatgaccttgggttgtaccaagtctga 83334 Query: 95 aaccgagtggatttattttttgtcccat 122 |||| | ||||||||||||||||||||| Sbjct: 83335 aaccaattggatttattttttgtcccat 83362
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 103 bits (52), Expect = 8e-19 Identities = 80/88 (90%), Gaps = 1/88 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaagg-aatggtgtttttgggttgtaccaagtctaa 94 ||||||||||||||||||||||||||||| |||| || |||||||||||||||||| | Sbjct: 82744 aataattttttggttgtgcgaaccaaagggaatgatgaccttgggttgtaccaagtctga 82803 Query: 95 aaccgagtggatttattttttgtcccat 122 |||| | ||||||||||||||||||||| Sbjct: 82804 aaccaattggatttattttttgtcccat 82831 Score = 58.0 bits (29), Expect = 4e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 245 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 304 |||||||| ||||||||||||||| | ||| ||||||| ||||||| || | |||||| Sbjct: 82982 aaactacgccctcgagctcgaggttttaatctcttcatgatagtacctttatttacttcg 83041 Query: 305 gctttagtaatgaataaattcgctt 329 |||||| |||| | |||||| |||| Sbjct: 83042 gctttactaatcactaaatttgctt 83066
>gb|AY727185.1| Pseudotrillium rivale psbA-trnH intergenic spacer, partial sequence; chloroplast Length = 1015 Score = 103 bits (52), Expect = 8e-19 Identities = 124/148 (83%) Strand = Plus / Plus Query: 347 atgagttgcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgata 406 |||||| ||||||| ||||| ||||||||||| || || |||||||||||||| ||||| Sbjct: 302 atgagtagcatttgatgctgcagaataaaccaatttcaaaatgggataagatgcccgata 361 Query: 407 gggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatctcgtcaag 466 |||||||| | ||||||||||| || ||| | ||| |||||| ||||||| |||| Sbjct: 362 aggcatgagttccagtatcataagtgtgtccgcataggaacgcccgcgaatctgatcaat 421 Query: 467 aactctttgtgctttgaaaacagacata 494 |||||| |||||||||||||||||||| Sbjct: 422 tactcttcgtgctttgaaaacagacata 449 Score = 56.0 bits (28), Expect = 2e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 246 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 305 |||| ||||||||||||| |||||| || || |||| ||||| || || | ||||||| | Sbjct: 202 aactccgtcctcgagctctaggtcttaactttttcacaatagcacccccattgacttcag 261 Query: 306 ctttagtaatgaataaattc 325 ||||| |||| ||||||||| Sbjct: 262 ctttactaataaataaattc 281
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 103 bits (52), Expect = 8e-19 Identities = 80/88 (90%), Gaps = 1/88 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaagg-aatggtgtttttgggttgtaccaagtctaa 94 ||||||||||||||||||||||||||||| |||| || |||||||||||||||||| | Sbjct: 83273 aataattttttggttgtgcgaaccaaagggaatgatgaccttgggttgtaccaagtctga 83332 Query: 95 aaccgagtggatttattttttgtcccat 122 |||| | ||||||||||||||||||||| Sbjct: 83333 aaccaattggatttattttttgtcccat 83360
>gb|DQ006171.1| Commelina communis voucher Wells 4872 US psbA-trnH intergenic spacer and tRNA-His (trnH) gene, partial sequence; chloroplast Length = 770 Score = 99.6 bits (50), Expect = 1e-17 Identities = 118/141 (83%) Strand = Plus / Plus Query: 354 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 413 |||||||| ||||| | ||||||||| ||||| |||| ||||||||||||||| ||||| Sbjct: 57 gcatttgctgctgcnggataaaccaattttaaaatggtataagatgctcgataaggcata 116 Query: 414 aggttcagtatcataacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctt 473 || | ||||||||||| |||||||| || |||| | ||||| | |||| |||||| Sbjct: 117 agttccagtatcataagtgtttcctcatacgaacggccgcgaatttgatcaattactctt 176 Query: 474 tgtgctttgaaaacagacata 494 ||||||||||||||||||||| Sbjct: 177 tgtgctttgaaaacagacata 197
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 97.6 bits (49), Expect = 5e-17 Identities = 80/89 (89%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaag-gaatggtgtttttgggttgtaccaagtctaa 94 |||| ||||| |||||||| |||||||| ||||| || ||||||||||||||||||| | Sbjct: 87864 aatactttttcggttgtgcaaaccaaagagaatgatgactttgggttgtaccaagtctga 87923 Query: 95 aaccgagtggatttattttttgtcccata 123 |||| |||||||||||||||||||||||| Sbjct: 87924 aaccaagtggatttattttttgtcccata 87952 Score = 85.7 bits (43), Expect = 2e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 354 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 413 |||||||| ||||| ||||||||||| ||||| ||||||||| |||||||||| |||||| Sbjct: 88237 gcatttgctgctgcagaataaaccaattttaaaatgggataacatgctcgataaggcatg 88296 Query: 414 aggttcagtatcataacagtttcctcgtagtaacg 448 || | |||||||||| ||||| |||||| |||| Sbjct: 88297 agttctagtatcataagtgtttcttcgtaggaacg 88331
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 97.6 bits (49), Expect = 5e-17 Identities = 87/97 (89%), Gaps = 2/97 (2%) Strand = Plus / Plus Query: 27 accttcagnaataattttttggttgtgcgaaccaaag-gaatggtgtttttgggttgtac 85 |||||||| |||| |||||||||||||| ||||||| ||||| || |||||||||||| Sbjct: 82490 accttcag-aatacttttttggttgtgcaaaccaaatagaatgatgactttgggttgtac 82548 Query: 86 caagtctaaaaccgagtggatttattttttgtcccat 122 ||||||| ||||| ||||||||||||||||||||||| Sbjct: 82549 caagtctgaaaccaagtggatttattttttgtcccat 82585
>gb|DQ069457.1| Acorus americanus ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 654 Score = 95.6 bits (48), Expect = 2e-16 Identities = 79/88 (89%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 36 aataattttttggttgtgcgaaccaaagg-aatggtgtttttgggttgtaccaagtctaa 94 ||||| ||||||||||||||||||||||| || | || ||||||||| ||||||||| | Sbjct: 88 aataactttttggttgtgcgaaccaaagggaaagatgactttgggttgcaccaagtctga 29 Query: 95 aaccgagtggatttattttttgtcccat 122 |||| ||||||||||||||||||||||| Sbjct: 28 aaccaagtggatttattttttgtcccat 1
>gb|AY727187.1| Trillium ovatum psbA-trnH intergenic spacer, partial sequence; chloroplast Length = 1029 Score = 95.6 bits (48), Expect = 2e-16 Identities = 111/132 (84%) Strand = Plus / Plus Query: 363 gctgccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagt 422 ||||| ||||||||||| || || |||||||||||||| ||||| |||||||| | |||| Sbjct: 335 gctgcagaataaaccaatttcaaaatgggataagatgcccgataaggcatgagttccagt 394 Query: 423 atcataacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttg 482 ||||||| || ||| | ||| |||||| ||||||| |||| |||||| |||||||| Sbjct: 395 atcataagtgtgtccgcataggaacgcccgcgaatctgatcaattactcttcgtgctttg 454 Query: 483 aaaacagacata 494 |||||||||||| Sbjct: 455 aaaacagacata 466 Score = 48.1 bits (24), Expect = 0.039 Identities = 66/80 (82%) Strand = Plus / Plus Query: 246 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 305 |||| ||||||||||||| |||||| || || |||| ||||| || || | ||||||| | Sbjct: 219 aactccgtcctcgagctctaggtcttaactttttcacaatagcacccccattgacttcag 278 Query: 306 ctttagtaatgaataaattc 325 ||| | |||| ||||||||| Sbjct: 279 cttgactaataaataaattc 298
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 93.7 bits (47), Expect = 7e-16 Identities = 95/111 (85%) Strand = Plus / Minus Query: 467 aactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaactctctc 526 |||||||||| ||||||||||||||||| |||| |||||||||| |||||||| | Sbjct: 4343410 aactctttgtactttgaaaacagacatatggatgtgtttttgtgcattgaaaacctgttt 4343351 Query: 527 gaacttaagtagacgatcggttggaactttccttgcgagtttccttagccc 577 |||||||| |||| |||||||||| ||| | ||||| |||||||||||||| Sbjct: 4343350 gaacttaattagatgatcggttggtactgttcttgcaagtttccttagccc 4343300
>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence Length = 122052 Score = 93.7 bits (47), Expect = 7e-16 Identities = 95/111 (85%) Strand = Plus / Plus Query: 467 aactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaactctctc 526 |||||||||| ||||||||||||||||| |||| |||||||||| |||||||| | Sbjct: 83087 aactctttgtactttgaaaacagacatatggatgtgtttttgtgcattgaaaacctgttt 83146 Query: 527 gaacttaagtagacgatcggttggaactttccttgcgagtttccttagccc 577 |||||||| |||| |||||||||| ||| | ||||| |||||||||||||| Sbjct: 83147 gaacttaattagatgatcggttggtactgttcttgcaagtttccttagccc 83197
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 93.7 bits (47), Expect = 7e-16 Identities = 95/111 (85%) Strand = Plus / Minus Query: 467 aactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaactctctc 526 |||||||||| ||||||||||||||||| |||| |||||||||| |||||||| | Sbjct: 4343525 aactctttgtactttgaaaacagacatatggatgtgtttttgtgcattgaaaacctgttt 4343466 Query: 527 gaacttaagtagacgatcggttggaactttccttgcgagtttccttagccc 577 |||||||| |||| |||||||||| ||| | ||||| |||||||||||||| Sbjct: 4343465 gaacttaattagatgatcggttggtactgttcttgcaagtttccttagccc 4343415
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 89.7 bits (45), Expect = 1e-14 Identities = 79/89 (88%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaagg-aatggtgtttttgggttgtaccaagtctaa 94 |||||||||| ||||||| ||||||||| |||| || ||||||||||||| ||||| | Sbjct: 85100 aataatttttgggttgtgaaaaccaaagggaatgatgactttgggttgtacccagtctga 85159 Query: 95 aaccgagtggatttattttttgtcccata 123 |||| |||||||||||||||||||||||| Sbjct: 85160 aaccaagtggatttattttttgtcccata 85188 Score = 85.7 bits (43), Expect = 2e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 354 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 413 |||||||| ||||| ||||||||||| || || ||||||||| ||||||||||||||||| Sbjct: 85449 gcatttgctgctgcagaataaaccaatttcaaaatgggataacatgctcgatagggcatg 85508 Query: 414 aggttcagtatcataacagtttcctcgtagtaacg 448 || | |||||||||| |||||||| ||| |||| Sbjct: 85509 agttctagtatcataagcgtttcctcataggaacg 85543 Score = 71.9 bits (36), Expect = 3e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 245 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 304 |||||||||||||||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 85341 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtaccttcattgacttcg 85400 Query: 305 gctttagtaatgaataaatt 324 |||||| |||||| |||||| Sbjct: 85401 gctttactaatgactaaatt 85420
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 89.7 bits (45), Expect = 1e-14 Identities = 79/89 (88%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaagg-aatggtgtttttgggttgtaccaagtctaa 94 |||||||||| ||||||| ||||||||| |||| || ||||||||||||| ||||| | Sbjct: 85097 aataatttttgggttgtgaaaaccaaagggaatgatgactttgggttgtacccagtctga 85156 Query: 95 aaccgagtggatttattttttgtcccata 123 |||| |||||||||||||||||||||||| Sbjct: 85157 aaccaagtggatttattttttgtcccata 85185 Score = 85.7 bits (43), Expect = 2e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 354 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 413 |||||||| ||||| ||||||||||| || || ||||||||| ||||||||||||||||| Sbjct: 85446 gcatttgctgctgcagaataaaccaatttcaaaatgggataacatgctcgatagggcatg 85505 Query: 414 aggttcagtatcataacagtttcctcgtagtaacg 448 || | |||||||||| |||||||| ||| |||| Sbjct: 85506 agttctagtatcataagcgtttcctcataggaacg 85540 Score = 71.9 bits (36), Expect = 3e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 245 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 304 |||||||||||||||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 85338 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtaccttcattgacttcg 85397 Query: 305 gctttagtaatgaataaatt 324 |||||| |||||| |||||| Sbjct: 85398 gctttactaatgactaaatt 85417
>gb|DQ069460.1| Ranunculus macranthus ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 651 Score = 87.7 bits (44), Expect = 5e-14 Identities = 78/88 (88%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 36 aataattttttggttgtgcgaaccaaag-gaatggtgtttttgggttgtaccaagtctaa 94 ||||||||||||||||||| ||||||| ||||| || |||||||||||||||| | | Sbjct: 88 aataattttttggttgtgcaaaccaaacagaatgatggctttgggttgtaccaagccgga 29 Query: 95 aaccgagtggatttattttttgtcccat 122 | |||||||||||||||||||||||||| Sbjct: 28 acccgagtggatttattttttgtcccat 1
>gb|AY727186.1| Trillium texanum psbA-trnH intergenic spacer, partial sequence; chloroplast Length = 1060 Score = 87.7 bits (44), Expect = 5e-14 Identities = 110/132 (83%) Strand = Plus / Plus Query: 363 gctgccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagt 422 ||||| ||||||||||| || || |||||||||||||| ||||| |||||||| |||| Sbjct: 344 gctgcagaataaaccaatttcaaaatgggataagatgcccgataaggcatgagtgccagt 403 Query: 423 atcataacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttg 482 ||||||| || ||| | ||| |||||| ||||||| |||| |||||| |||||||| Sbjct: 404 atcataagtgtgtccacataggaacgcccgcgaatctgatcaattactcttcgtgctttg 463 Query: 483 aaaacagacata 494 |||||||||||| Sbjct: 464 aaaacagacata 475 Score = 48.1 bits (24), Expect = 0.039 Identities = 66/80 (82%) Strand = Plus / Plus Query: 246 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 305 |||| ||||||||||||| |||||| || || |||| ||||| || || | ||||||| | Sbjct: 228 aactccgtcctcgagctctaggtcttaactttttcacaatagcacccccattgacttcag 287 Query: 306 ctttagtaatgaataaattc 325 ||| | |||| ||||||||| Sbjct: 288 cttgactaataaataaattc 307
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 87.7 bits (44), Expect = 5e-14 Identities = 78/88 (88%), Gaps = 1/88 (1%) Strand = Plus / Plus Query: 39 aattttttggttgtgcgaaccaaag-gaatggtgtttttgggttgtaccaagtctaaaac 97 |||||||||||| ||||||||||| ||||| || |||| ||||| |||||||| |||| Sbjct: 85491 aattttttggttttgcgaaccaaaaagaatgatgactttgagttgttccaagtctgaaac 85550 Query: 98 cgagtggatttattttttgtcccatatt 125 | |||||||||||||||||||||||||| Sbjct: 85551 caagtggatttattttttgtcccatatt 85578 Score = 65.9 bits (33), Expect = 2e-07 Identities = 196/249 (78%), Gaps = 1/249 (0%) Strand = Plus / Plus Query: 246 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 305 |||||||||||||||| || ||| | || || ||||||||||| | ||| ||||||| | Sbjct: 85691 aactacgtcctcgagcccggggttttaactttttcataatagtgcctctattgacttcag 85750 Query: 306 ctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggct 365 ||||| |||| ||||| | ||| || ||| || ||| |||| | |||||||| ||| Sbjct: 85751 ctttactaataaataagtcaacttcattc-aaacccatattatgactagcatttgctgct 85809 Query: 366 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 425 || |||||||| || |||||||| ||||||||||| | ||| ||||| || | |||||| Sbjct: 85810 gcagaataaactaattttaagattggataagatgccctataaggcattagttctagtatc 85869 Query: 426 ataacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaa 485 || | | |||||| || |||| | ||||||| |||| |||||| ||||||||||| Sbjct: 85870 atgagtgcttcctcataagaacgtccacgaatctgatcaattactcttcgtgctttgaaa 85929 Query: 486 acagacata 494 ||||||||| Sbjct: 85930 acagacata 85938
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 85.7 bits (43), Expect = 2e-13 Identities = 92/106 (86%), Gaps = 2/106 (1%) Strand = Plus / Plus Query: 20 cctgtagaccttcagnaataattttttggttgtgcgaaccaaagg-aatggtgtttttgg 78 ||||||||||| | | ||||| ||||||||||||||||||||||| |||| || ||||| Sbjct: 84485 cctgtagacct-ctgcaataactttttggttgtgcgaaccaaagggaatgatgactttgg 84543 Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccatat 124 || |||||||| ||||||||||||||||||||||| ||||||| Sbjct: 84544 ttttcaccaagtcggaaaccgagtggatttattttttgccccatat 84589 Score = 75.8 bits (38), Expect = 2e-10 Identities = 116/142 (81%) Strand = Plus / Plus Query: 354 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 413 |||||||| ||||| |||||||||| || || |||||||||||||||||||| |||||| Sbjct: 84851 gcatttgctgctgcagaataaaccagtttaaaaatgggataagatgctcgataaggcatg 84910 Query: 414 aggttcagtatcataacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctt 473 || | ||||| ||||| |||||| | ||| |||| | ||||||| |||| |||||| Sbjct: 84911 agttccagtagcataagtgtttccgcataggaacgtccacgaatctgatcaacgactctt 84970 Query: 474 tgtgctttgaaaacagacatag 495 |||||||| | ||||||||| Sbjct: 84971 cgtgctttgtgagcagacatag 84992 Score = 44.1 bits (22), Expect = 0.61 Identities = 61/74 (82%) Strand = Plus / Plus Query: 246 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 305 ||||||||||| ||| |||||| | || || |||| ||||||| || | ||||||||| Sbjct: 84744 aactacgtcctttagcccgaggtttaaactttttcacgatagtacccccattgacttcgg 84803 Query: 306 ctttagtaatgaat 319 ||||| |||||||| Sbjct: 84804 ctttactaatgaat 84817
>emb|AJ315790.1|OSA315790 Oryza sativa partial BP-73 gene for SAP-like protein Length = 5896 Score = 85.7 bits (43), Expect = 2e-13 Identities = 94/111 (84%) Strand = Plus / Plus Query: 467 aactctttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaactctctc 526 |||||||||| ||||||||||||||||| |||| |||||||||| |||||||| | Sbjct: 3410 aactctttgtactttgaaaacagacatatggatgtgtttttgtgcgttgaaaacctgttt 3469 Query: 527 gaacttaagtagacgatcggttggaactttccttgcgagtttccttagccc 577 |||||||| |||| |||||| ||| ||| | ||||| |||||||||||||| Sbjct: 3470 gaacttaattagatgatcggctggtactgttcttgcaagtttccttagccc 3520
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 85.7 bits (43), Expect = 2e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 354 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 413 |||||||| ||||| ||||||||||| || || ||||||||| ||||||||||||||||| Sbjct: 85332 gcatttgctgctgcagaataaaccaatttcaaaatgggataacatgctcgatagggcatg 85391 Query: 414 aggttcagtatcataacagtttcctcgtagtaacg 448 || | |||||||||| |||||||| ||| |||| Sbjct: 85392 agttctagtatcataagcgtttcctcataggaacg 85426 Score = 81.8 bits (41), Expect = 3e-12 Identities = 78/89 (87%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaagg-aatggtgtttttgggttgtaccaagtctaa 94 |||||||||| ||||||| ||||||||| |||| || |||||||||||| ||||| | Sbjct: 84983 aataatttttgggttgtgaaaaccaaagggaatgatgaccttgggttgtacccagtctga 85042 Query: 95 aaccgagtggatttattttttgtcccata 123 |||| |||||||||||||||||||||||| Sbjct: 85043 aaccaagtggatttattttttgtcccata 85071 Score = 71.9 bits (36), Expect = 3e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 245 aaactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcg 304 |||||||||||||||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 85224 aaactacgtcctcgagctcgaggtttcaatttcttcacagtagtaccttcattgacttcg 85283 Query: 305 gctttagtaatgaataaatt 324 |||||| |||||| |||||| Sbjct: 85284 gctttactaatgactaaatt 85303
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 83.8 bits (42), Expect = 7e-13 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand = Plus / Plus Query: 44 tttggttgtgcgaaccaaagg-aatggtgtttttgggttgtaccaagtctaaaaccgagt 102 ||||||||||||||||||||| || | || |||||||||| |||||||| ||||| ||| Sbjct: 90030 tttggttgtgcgaaccaaagggaacgatgactttgggttgtgccaagtctgaaaccaagt 90089 Query: 103 ggatttattttttgtcccatat 124 ||||||||||| |||||||||| Sbjct: 90090 ggatttattttctgtcccatat 90111
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 81.8 bits (41), Expect = 3e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 75 ttgggttgtaccaagtctaaaaccgagtggatttattttttgtcccata 123 |||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 85759 ttgggttgcaccaagtcgaaaaccgagtggatttattttttgtcccata 85807 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 354 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 413 |||||||| ||||||||||||||||| ||||| || |||||| |||||||||| |||||| Sbjct: 86083 gcatttgctgctgccgaataaaccaattttaaaattggataacatgctcgataaggcatg 86142 Query: 414 aggttcagtatcataacagtttcctcgtagtaacg 448 || | |||||||| | ||||| |||||| |||| Sbjct: 86143 agttcgagtatcatcattgtttcttcgtaggaacg 86177
>emb|AJ560717.1|OMI560717 Orobanche minor chloroplast rps19 gene (partial), rpl22 gene and rps3 gene (partial) Length = 1121 Score = 81.8 bits (41), Expect = 3e-12 Identities = 78/89 (87%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 36 aataattttttggttgtgcgaaccaaag-gaatggtgtttttgggttgtaccaagtctaa 94 |||| ||||||| |||| | |||||||| ||||| || |||||||||||||||||||| | Sbjct: 712 aatatttttttgcttgtacaaaccaaagagaatgatgattttgggttgtaccaagtctga 653 Query: 95 aaccgagtggatttattttttgtcccata 123 || | |||||||||||||||||| ||||| Sbjct: 652 aaacaagtggatttattttttgtgccata 624
>gb|M22826.1|RICCPRPL Oryza sativa chloroplast ribosomal protein (rpL23, rpL2 and rpS190) genes, complete cds, ribosomal protein L22 (rpL22) gene, 5' end, transfer RNA-Ile and -His genes Length = 2789 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 596 cctagggatatactttactagtttgaaacttgtcataaataagtttattccccgcctacc 655 ||||||| |||||||||| | |||||||||||||||||||||| ||||||||||| |||| Sbjct: 2789 cctaggggtatactttaccaatttgaaacttgtcataaataaggttattccccgcttacc 2730 Query: 656 t 656 | Sbjct: 2729 t 2729
>gb|DQ006202.1| Trillium sessile voucher Wells 4879 US PsbA (psbA) gene, partial cds; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast Length = 1172 Score = 81.8 bits (41), Expect = 3e-12 Identities = 198/249 (79%), Gaps = 1/249 (0%) Strand = Plus / Plus Query: 246 aactacgtcctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcgg 305 |||| ||||||||||||| |||||| || || |||| ||||| || || | ||||||| | Sbjct: 283 aactccgtcctcgagctctaggtcttaactttttcacaatagcacccccattgacttcag 342 Query: 306 ctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggct 365 ||| | |||| ||||||||| |||| || || || | |||||| || |||| ||| Sbjct: 343 cttgactaataaataaattcactttcttc-aagcccaggttatgagtagcgtttgatgct 401 Query: 366 gccgaataaaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatc 425 || ||| ||||||| || || |||||||||||||| ||||| |||||||| ||||||| Sbjct: 402 gcagaagaaaccaatttcaaaatgggataagatgcccgataaggcatgagtgccagtatc 461 Query: 426 ataacagtttcctcgtagtaacgccaccgaatctcgtcaagaactctttgtgctttgaaa 485 |||| || ||| | ||| |||||| ||||||| |||| |||||| ||||||||||| Sbjct: 462 ataagtgtgtccgcataggaacgcccgcgaatctgatcaatgactcttcgtgctttgaaa 521 Query: 486 acagacata 494 ||||||||| Sbjct: 522 acagacata 530
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 81.8 bits (41), Expect = 3e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 75 ttgggttgtaccaagtctaaaaccgagtggatttattttttgtcccata 123 |||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 85988 ttgggttgcaccaagtcgaaaaccgagtggatttattttttgtcccata 86036 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 354 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 413 |||||||| ||||||||||||||||| ||||| || |||||| |||||||||| |||||| Sbjct: 86312 gcatttgctgctgccgaataaaccaattttaaaattggataacatgctcgataaggcatg 86371 Query: 414 aggttcagtatcataacagtttcctcgtagtaacg 448 || | |||||||| | ||||| |||||| |||| Sbjct: 86372 agttcgagtatcatcattgtttcttcgtaggaacg 86406
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 81.8 bits (41), Expect = 3e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 75 ttgggttgtaccaagtctaaaaccgagtggatttattttttgtcccata 123 |||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 88151 ttgggttgtaccaagtctgaaaccaagtggatttattttttgtcccata 88199 Score = 77.8 bits (39), Expect = 4e-11 Identities = 157/195 (80%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 254 cctcgagctcgaggtctgaatttcttcataatagtactcctactgacttcggctttagta 313 ||||||||||||||| | ||||| |||||| |||||| | ||||||| |||||| || Sbjct: 88364 cctcgagctcgaggttttaattttttcatagtagtaccctcgttgacttcagctttacta 88423 Query: 314 atgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggctgccgaata 373 || | |||| | || || | |||| || ||| |||| | |||||||| ||||| ||||| Sbjct: 88424 ataactaaacttgc-ttcattgaaacccatattatgactagcatttgctgctgcagaata 88482 Query: 374 aaccaactttaagatgggataagatgctcgatagggcatgaggttcagtatcataacagt 433 ||||||||| || ||||||||| | |||||||| ||||| || | |||||||||| || Sbjct: 88483 aaccaacttaaaaatgggataacacgctcgataaggcataagttcgagtatcataagtgt 88542 Query: 434 ttcctcgtagtaacg 448 |||||||||| |||| Sbjct: 88543 ttcctcgtaggaacg 88557
>dbj|AP005880.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0032G22 Length = 127365 Score = 79.8 bits (40), Expect = 1e-11 Identities = 62/68 (91%), Gaps = 1/68 (1%) Strand = Plus / Minus Query: 314 atgaataaattcgctttggtcgaaatccctataatgagttgcatttgcggctgccgaata 373 ||||||||||| |||||| |||||||||||||||||||| | |||||| | ||||||||| Sbjct: 18621 atgaataaatttgctttg-tcgaaatccctataatgagtagtatttgctgttgccgaata 18563 Query: 374 aaccaact 381 |||||||| Sbjct: 18562 aaccaact 18555 Score = 71.9 bits (36), Expect = 3e-09 Identities = 96/114 (84%), Gaps = 9/114 (7%) Strand = Plus / Minus Query: 408 ggcatgaggttcagtatcataacagtttcctcgtagtaacgccaccgaatctcgtcaaga 467 |||||||||||||||||||||| ||||| |||||||||||| ||||| | |||| Sbjct: 18540 ggcatgaggttcagtatcataatggtttcttcgtagtaacgc------atctcatgaaga 18487 Query: 468 actc-tttgtgctttgaaaacagacatagggatacgtttttgtgctttgaaaac 520 |||| ||||| |||||||||| ||||| |||| ||||||||||||||||||| Sbjct: 18486 actcttttgtactttgaaaacggacat--ggatgtgtttttgtgctttgaaaac 18435
>emb|X13336.1|CHSORP Spinacia oleracea plastid genes rps3, rps19, rpl14, rpl16 and rpl22 for ribosomal proteins S3, S19, L14, L16 and L22 Length = 4102 Score = 75.8 bits (38), Expect = 2e-10 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 41 ttttttggttgtgcgaaccaaagg-aatggtgtttttgggttgtaccaagtctaaaaccg 99 ||||||||||||| ||||||||| ||| || |||| ||||||||||||| ||||| Sbjct: 1114 ttttttggttgtgaaaaccaaagggaataatgactttgtgttgtaccaagtcggaaacca 1055 Query: 100 agtggatttattttttgtcccatatt 125 |||||||||||||||||||||||||| Sbjct: 1054 agtggatttattttttgtcccatatt 1029 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 354 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 413 |||||||| ||||| ||||||| ||| || || ||||||||| ||||||||||||||||| Sbjct: 690 gcatttgctgctgcagaataaatcaatttaaaaatgggataacatgctcgatagggcatg 631 Query: 414 ag 415 || Sbjct: 630 ag 629
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 75.8 bits (38), Expect = 2e-10 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand = Plus / Plus Query: 41 ttttttggttgtgcgaaccaaagg-aatggtgtttttgggttgtaccaagtctaaaaccg 99 ||||||||||||| ||||||||| ||| || |||| ||||||||||||| ||||| Sbjct: 81828 ttttttggttgtgaaaaccaaagggaataatgactttgtgttgtaccaagtcggaaacca 81887 Query: 100 agtggatttattttttgtcccatatt 125 |||||||||||||||||||||||||| Sbjct: 81888 agtggatttattttttgtcccatatt 81913 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 354 gcatttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatg 413 |||||||| ||||| ||||||| ||| || || ||||||||| ||||||||||||||||| Sbjct: 82252 gcatttgctgctgcagaataaatcaatttaaaaatgggataacatgctcgatagggcatg 82311 Query: 414 ag 415 || Sbjct: 82312 ag 82313
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 73.8 bits (37), Expect = 7e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 68 ggtgtttttgggttgtaccaagtctaaaaccgagtggatttattttttgtcccatat 124 |||| ||||| ||| |||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 78342 ggtgattttgtgttataccaagtctaaaaccaagtgggtttattttttgtcccatat 78398
>emb|Y00141.1|CHZMRP19 Maize chloroplast rps19 gene for ribosomal protein S19 Length = 411 Score = 73.8 bits (37), Expect = 7e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 623 acttgtcataaataagtttattccccgcctacctttactttattt 667 |||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 411 acttgtcataaataaggttattacccgcctacctttactttattt 367
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 73.8 bits (37), Expect = 7e-10 Identities = 77/89 (86%), Gaps = 1/89 (1%) Strand = Plus / Minus Query: 36 aataattttttggttgtgcgaaccaaag-gaatggtgtttttgggttgtaccaagtctaa 94 |||||||| |||||||||| ||||||| |||| || ||||| |||||||||||||| | Sbjct: 42385 aataatttcttggttgtgcaaaccaaatagaatcatgattttgagttgtaccaagtctga 42326 Query: 95 aaccgagtggatttattttttgtcccata 123 |||| || |||| |||||||||||||||| Sbjct: 42325 aaccaagcggatgtattttttgtcccata 42297
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 73.8 bits (37), Expect = 7e-10 Identities = 77/89 (86%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaag-gaatggtgtttttgggttgtaccaagtctaa 94 |||||||| |||||||||| ||||||| |||| || |||| |||||||||||||| | Sbjct: 81255 aataatttgttggttgtgcaaaccaaatagaatcatgactttgagttgtaccaagtctga 81314 Query: 95 aaccgagtggatttattttttgtcccata 123 |||| || ||||||||||||||||||||| Sbjct: 81315 aaccaagcggatttattttttgtcccata 81343
>gb|AF536225.1| Vigna angularis chloroplast S10B operon, partial sequence Length = 6550 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 74 tttgggttgtaccaagtctaaaaccgagtggatttattttttgtcccata 123 |||| |||||||||||||| ||||| || ||||||||||||||||||||| Sbjct: 3228 tttgagttgtaccaagtctgaaaccaagcggatttattttttgtcccata 3179
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 74 tttgggttgtaccaagtctaaaaccgagtggatttattttttgtcccata 123 |||| |||||||||||||| ||||| || ||||||||||||||||||||| Sbjct: 82556 tttgagttgtaccaagtctgaaaccaagcggatttattttttgtcccata 82605
>gb|AC153125.10| Medicago truncatula clone mth2-74f16, complete sequence Length = 128458 Score = 65.9 bits (33), Expect = 2e-07 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaaag-gaatggtgtttttgggttgtaccaagtctaa 94 ||||||||||||||||||| ||||||| |||| || ||| | |||||||||||||| | Sbjct: 26580 aataattttttggttgtgcaaaccaaatagaatcatgatttggagttgtaccaagtctga 26639 Query: 95 aaccgagtggatttattttttgtcccata 123 |||| | |||| |||||||||||||||| Sbjct: 26640 aaccaaacggatgtattttttgtcccata 26668
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 61.9 bits (31), Expect = 3e-06 Identities = 82/95 (86%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 22 tgtagaccttcagnaataattttttggttgtgcgaaccaaaggaatggtgtttttgggtt 81 |||||||| |||| |||||| |||||||||||| |||||| ||||| || || | ||| Sbjct: 88548 tgtagaccgtcag-aataatcttttggttgtgc-aaccaatcgaatgatgactt-gagtt 88604 Query: 82 gtaccaagtctaaaaccgagtggatttattttttg 116 ||||||||||| |||||||| |||||||||||||| Sbjct: 88605 gtaccaagtctgaaaccgaggggatttattttttg 88639
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 73 ttttgggttgtaccaagtctaaaaccgagtggatttatttt 113 ||||||||| ||||||||||||||| |||||||||||||| Sbjct: 61088 ttttgggttacaccaagtctaaaaccaagtggatttatttt 61128
>gb|U92462.1|PAU92462 Picea abies ribosomal protein L16 (rpl16) partial cds, ribosomal proteins S3 (rps3), L22 (rpl22), S19 (rps19), L2 (rpl2), and L23 (rpl23) genes, complete cds, tRNA-Ile (trnI) gene, complete sequence and psbA, ndhC and ndhK pseudogenes, chloroplast genes encoding chloroplast products Length = 4723 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 73 ttttgggttgtaccaagtctaaaaccgagtggatttatttt 113 ||||||||| ||||||||||||||| |||||||||||||| Sbjct: 764 ttttgggttacaccaagtctaaaaccaagtggatttatttt 804
>dbj|AB087471.1| Anthoceros formosae chloroplast rps3, rpl22 mRNA for ribosomal protein S3, ribosomal protein L22, complete and partial cds Length = 735 Score = 56.0 bits (28), Expect = 2e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 85 ccaagtctaaaaccgagtggatttattttttgtcccatat 124 ||||||| |||||| |||||||| |||||||||||||||| Sbjct: 638 ccaagtcgaaaaccaagtggattaattttttgtcccatat 677
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 56.0 bits (28), Expect = 2e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 85 ccaagtctaaaaccgagtggatttattttttgtcccatat 124 ||||||| |||||| |||||||| |||||||||||||||| Sbjct: 102506 ccaagtcgaaaaccaagtggattaattttttgtcccatat 102545
>gb|AY962222.1| Hevea brasiliensis clone hmct52 microsatellite sequence Length = 813 Score = 54.0 bits (27), Expect = 6e-04 Identities = 97/119 (81%), Gaps = 1/119 (0%) Strand = Plus / Minus Query: 297 tgacttcggctttagtaatgaataaattcgctttggtcgaaatccctataatgagttgca 356 |||||||||||||| |||||| |||||| | || || |||| || ||| ||| | ||| Sbjct: 124 tgacttcggctttactaatgattaaatt-gacttcgttgaaacccatattgtgactagca 66 Query: 357 tttgcggctgccgaataaaccaactttaagatgggataagatgctcgatagggcatgag 415 ||||| ||||| ||||||| ||| || || | ||||||| |||||||||| |||||||| Sbjct: 65 tttgctgctgcagaataaatcaatttaaaaaggggataacatgctcgataaggcatgag 7
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 54.0 bits (27), Expect = 6e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 73 ttttgggttgtaccaagtctaaaaccgagtggatttattttttgtcccata 123 ||||| ||||||||||||| ||| || ||||||| ||||||||||||||| Sbjct: 81767 ttttgagttgtaccaagtcgaaatccaagtggatggattttttgtcccata 81817
>gb|DQ069458.1| Ginkgo biloba ribosomal protein S3 (rps3) gene, partial cds; chloroplast Length = 654 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 73 ttttgggttgtaccaagtctaaaaccgagtggatttattttttgtcccat 122 ||||||||| ||||||||||||||| |||||||| ||| | |||||||| Sbjct: 50 ttttgggttacaccaagtctaaaaccaagtggattaattctctgtcccat 1
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 52.0 bits (26), Expect = 0.003 Identities = 29/30 (96%) Strand = Plus / Plus Query: 84 accaagtctaaaaccgagtggatttatttt 113 ||||||||||||||| |||||||||||||| Sbjct: 62990 accaagtctaaaaccaagtggatttatttt 63019
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 48.1 bits (24), Expect = 0.039 Identities = 73/88 (82%), Gaps = 1/88 (1%) Strand = Plus / Plus Query: 36 aataattttttggttgtgcgaaccaa-aggaatggtgtttttgggttgtaccaagtctaa 94 |||||||||||||||| || |||||| | ||||| || || || || |||||||| || Sbjct: 82268 aataattttttggttgcgcaaaccaataagaatgatgattctgagtgacaccaagtcgaa 82327 Query: 95 aaccgagtggatttattttttgtcccat 122 |||| ||||| || |||||||||||||| Sbjct: 82328 aaccaagtgggttaattttttgtcccat 82355
>gb|AF041468.1| Guillardia theta complete plastid genome Length = 121524 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 87 aagtctaaaaccgagtggatttattttttgtccca 121 |||||||||||| | |||||||| ||||||||||| Sbjct: 102131 aagtctaaaacctaatggatttactttttgtccca 102097
>gb|AC097174.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1111_A10, complete sequence Length = 155106 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Plus Query: 335 gaaatccctataatgagttgcatttg 360 |||||||||||||||||| ||||||| Sbjct: 91195 gaaatccctataatgagtagcatttg 91220
>gb|AF389766.1| Uncultured bacterium clone NIW3-1 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 249 tacgtcctcgagctcgaggtct 270 |||||||||||||||||||||| Sbjct: 192 tacgtcctcgagctcgaggtct 171
>gb|AY424708.1| Uncultured bacterium isolate DGGE band BDS17 NifH (nifH) gene, partial cds Length = 221 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 249 tacgtcctcgagctcgaggtct 270 |||||||||||||||||||||| Sbjct: 94 tacgtcctcgagctcgaggtct 73
>gb|AY424700.1| Uncultured bacterium isolate DGGE band BRS9 NifH (nifH) gene, partial cds Length = 231 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 249 tacgtcctcgagctcgaggtct 270 |||||||||||||||||||||| Sbjct: 94 tacgtcctcgagctcgaggtct 73
>gb|AY424699.1| Uncultured bacterium isolate DGGE band BDS8 NifH (nifH) gene, partial cds Length = 216 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 249 tacgtcctcgagctcgaggtct 270 |||||||||||||||||||||| Sbjct: 94 tacgtcctcgagctcgaggtct 73
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Plus Query: 335 gaaatccctataatgagttgcatttg 360 |||||||||||||||||| ||||||| Sbjct: 5176692 gaaatccctataatgagtagcatttg 5176717 Score = 44.1 bits (22), Expect = 0.61 Identities = 46/54 (85%) Strand = Plus / Minus Query: 585 ttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 ||||| ||||||| |||| | ||| |||| ||||||||||||||| ||||||| Sbjct: 4877979 ttcttatttatccaaggggtttacggtactggtttgaaacttgtcacaaataag 4877926
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 44.1 bits (22), Expect = 0.61 Identities = 46/54 (85%) Strand = Plus / Minus Query: 585 ttcttctttatcctagggatatactttactagtttgaaacttgtcataaataag 638 ||||| ||||||| |||| | ||| |||| ||||||||||||||| ||||||| Sbjct: 150387 ttcttatttatccaaggggtttacggtactggtttgaaacttgtcacaaataag 150334
>gb|AY386787.1| Bradyrhizobium liaoningense strain Spr3-7 nitrogenase Fe protein (nifH) gene, partial cds Length = 356 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tacgtcctcgagctcgaggtc 269 ||||||||||||||||||||| Sbjct: 198 tacgtcctcgagctcgaggtc 178
>gb|AE007235.1| Sinorhizobium meliloti 1021 plasmid pSymA section 41 of 121 of the complete plasmid sequence Length = 10370 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 8029 acgtcctcgagctcgaggtct 8009
>gb|DQ480974.1| Uncultured bacterium clone RT-CLY_20 dinitrogenase reductase (nifH) gene, partial cds Length = 329 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtct 75
>gb|DQ480958.1| Uncultured bacterium clone RT-075_39 dinitrogenase reductase (nifH) gene, partial cds Length = 329 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtct 75
>gb|DQ480915.1| Uncultured bacterium clone UT-CLY_37 dinitrogenase reductase (nifH) gene, partial cds Length = 329 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtct 75
>gb|DQ480883.1| Uncultured bacterium clone UT-600_30 dinitrogenase reductase (nifH) gene, partial cds Length = 329 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtct 75
>gb|AF389770.1| Uncultured bacterium clone NIS16-4 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtct 171
>gb|AF389775.1| Uncultured bacterium clone NIS15-3 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtct 171
>gb|AF389778.1| Uncultured bacterium clone NIS14-4 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtct 171
>gb|AF389779.1| Uncultured bacterium clone NIS14-3 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtct 171
>gb|AF389783.1| Uncultured bacterium clone NIS13-3 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtct 171
>gb|AF389790.1| Uncultured bacterium clone NIS11-3 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtct 171
>gb|AY424732.1| Uncultured bacterium isolate DGGE band BDS41 NifH (nifH) gene, partial cds Length = 234 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 93 acgtcctcgagctcgaggtct 73
>gb|AY424697.1| Uncultured bacterium isolate DGGE band BDS6 NifH (nifH) gene, partial cds Length = 249 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tacgtcctcgagctcgaggtc 269 ||||||||||||||||||||| Sbjct: 94 tacgtcctcgagctcgaggtc 74
>gb|AY221812.1| Xanthobacter flavus clone CC1080A1 dinitrogenase reductase (nifH) gene, partial cds Length = 324 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtct 75
>gb|AY232321.1| Uncultured bacterium clone GN2018A1_RT dinitrogenase reductase (nifH) mRNA, partial cds Length = 324 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtct 75
>gb|AY159600.1| Uncultured Sinorhizobium sp. clone nifH102 NifH (nifH) gene, partial cds Length = 368 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtct 96
>gb|AY159587.1| Uncultured Sinorhizobium sp. clone nifH11 NifH (nifH) gene, partial cds Length = 368 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtct 96
>gb|AY360976.1| Uncultured bacterium cluster O NifH (nifH) gene, partial cds Length = 317 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 90 acgtcctcgagctcgaggtct 70
>gb|AY196404.1| Uncultured nitrogen-fixing bacterium clone g1-HW13 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtct 96
>ref|XM_804647.1| Trypanosoma cruzi strain CL Brener retrotransposon hot spot (RHS) protein (Tc00.1047053507555.80) partial mRNA Length = 2757 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 627 gtcataaataagtttattccccgcc 651 ||||| ||||||||||||||||||| Sbjct: 1221 gtcatgaataagtttattccccgcc 1197
>gb|AC119828.9| Mus musculus chromosome 10, clone RP23-186A24, complete sequence Length = 205915 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 494 agggatacgtttttgtgctttgaaa 518 |||||||||||||||||| |||||| Sbjct: 176607 agggatacgtttttgtgccttgaaa 176583
>emb|AJ716367.1| Uncultured bacterium partial nifH gene for dinitrogenase reductase, clone SERF-54B Length = 357 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 113 acgtcctcgagctcgaggtct 93
>emb|AJ716364.1| Uncultured bacterium partial nifH gene for dinitrogenase reductase, clone SERF-44A Length = 357 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 113 acgtcctcgagctcgaggtct 93
>emb|AJ716363.1| Uncultured bacterium partial nifH gene for dinitrogenase reductase, clone SERF-41B Length = 357 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 113 acgtcctcgagctcgaggtct 93
>emb|AJ716347.1| Uncultured bacterium partial nifH gene for dinitrogenase reductase, clone SERE-22A Length = 357 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 113 acgtcctcgagctcgaggtct 93
>emb|AJ716276.1| Uncultured bacterium partial nifH gene for dinitrogenase reductase, clone GYMC-29B Length = 357 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tacgtcctcgagctcgaggtc 269 ||||||||||||||||||||| Sbjct: 114 tacgtcctcgagctcgaggtc 94
>emb|AJ716274.1| Uncultured bacterium partial nifH gene for dinitrogenase reductase, clone GYMC-22B Length = 357 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tacgtcctcgagctcgaggtc 269 ||||||||||||||||||||| Sbjct: 114 tacgtcctcgagctcgaggtc 94
>emb|BX927234.8| Zebrafish DNA sequence from clone CH211-196N4 in linkage group 19, complete sequence Length = 187155 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 tattttttgtcccatattttt 128 ||||||||||||||||||||| Sbjct: 96103 tattttttgtcccatattttt 96123
>gb|AF484656.1| Sinorhizobium sp. xhj12s nitrogenase iron protein-like protein (nifH) gene, partial sequence Length = 447 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 85 acgtcctcgagctcgaggtct 65
>gb|AF484635.1| Bradyrhizobium sp. 48b nitrogenase iron protein-like protein (nifH) gene, partial sequence Length = 447 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tacgtcctcgagctcgaggtc 269 ||||||||||||||||||||| Sbjct: 85 tacgtcctcgagctcgaggtc 65
>gb|AF484634.1| Bradyrhizobium sp. 48a nitrogenase iron protein (nifH) gene, partial cds Length = 446 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tacgtcctcgagctcgaggtc 269 ||||||||||||||||||||| Sbjct: 85 tacgtcctcgagctcgaggtc 65
>gb|AF484633.1| Bradyrhizobium sp. 49b nitrogenase iron protein (nifH) gene, partial cds Length = 446 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tacgtcctcgagctcgaggtc 269 ||||||||||||||||||||| Sbjct: 85 tacgtcctcgagctcgaggtc 65
>gb|AF484632.1| Bradyrhizobium sp. 40a nitrogenase iron protein-like protien (nifH) gene, partial sequence Length = 450 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tacgtcctcgagctcgaggtc 269 ||||||||||||||||||||| Sbjct: 85 tacgtcctcgagctcgaggtc 65
>gb|AF484631.1| Bradyrhizobium sp. 125e nitrogenase iron protein (nifH) gene, partial cds Length = 445 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tacgtcctcgagctcgaggtc 269 ||||||||||||||||||||| Sbjct: 85 tacgtcctcgagctcgaggtc 65
>gb|AF484629.1| Bradyrhizobium sp. 108a1 nitrogenase iron protein (nifH) gene, partial cds Length = 445 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tacgtcctcgagctcgaggtc 269 ||||||||||||||||||||| Sbjct: 85 tacgtcctcgagctcgaggtc 65
>gb|AF484628.1| Bradyrhizobium sp. 123b nitrogenase iron protein (nifH) gene, partial cds Length = 446 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tacgtcctcgagctcgaggtc 269 ||||||||||||||||||||| Sbjct: 85 tacgtcctcgagctcgaggtc 65
>emb|BX323543.11| Zebrafish DNA sequence from clone DKEYP-67E1 in linkage group 25, complete sequence Length = 181520 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 tattttttgtcccatattttt 128 ||||||||||||||||||||| Sbjct: 138118 tattttttgtcccatattttt 138098
>dbj|AB217474.1| Sphingomonas azotifigens nifH gene for dinitrogenase reductase subunit, partial cds Length = 726 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 192 acgtcctcgagctcgaggtct 172
>dbj|AB182914.1| Pleomorphomonas oryzae nifH gene for Fe protein of nitrogenase-nifH, partial cds, strain:F-4 Length = 418 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 203 acgtcctcgagctcgaggtct 183
>gb|DQ413016.1| Sinorhizobium meliloti isolate RP254 NifH (nifH) gene, partial cds Length = 715 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 165 acgtcctcgagctcgaggtct 145
>gb|DQ426077.1| Uncultured bacterium clone 25.101 NifH-like (nifH) gene, partial sequence Length = 331 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 113 acgtcctcgagctcgaggtct 93
>gb|DQ425401.1| Uncultured bacterium clone 4.77 NifH-like (nifH) gene, partial sequence Length = 239 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 98 acgtcctcgagctcgaggtct 78
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 1704617 acgtcctcgagctcgaggtct 1704637
>dbj|AB208384.1| Uncultured nitrogen-fixing bacterium mRNA for dinitrogenase reductase, partial cds, clone: NE5L-ROR32 Length = 390 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 203 acgtcctcgagctcgaggtct 183
>gb|AF296349.1|AF296349 Xanthobacter autotrophicus clone p11xa dinitrogenase reductase (nifH) gene, partial cds Length = 403 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 177 acgtcctcgagctcgaggtct 157
>gb|AF296348.1|AF296348 Xanthobacter autotrophicus clone p10xa dinitrogenase reductase (nifH) gene, partial cds Length = 403 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 177 acgtcctcgagctcgaggtct 157
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 94 aaaccgagtggatttattttttgtcccat 122 ||||||| |||||||| |||||||||||| Sbjct: 765377 aaaccgattggatttactttttgtcccat 765349
>gb|AY795615.1| Uncultured bacterium clone nifH.Pucci.S8 dinitrogenase reductase (nifH) gene, partial cds Length = 355 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AC091522.23| Mus musculus strain C57BL/6J chromosome 10 clone rp23-199g2, complete sequence Length = 214798 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 494 agggatacgtttttgtgctttgaaa 518 |||||||||||||||||| |||||| Sbjct: 27852 agggatacgtttttgtgccttgaaa 27828
>gb|AY724114.2| Uncultured bacterium clone DUNnif031 (+1A) (OTU#032) dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY724113.2| Uncultured bacterium clone DUNnif030 (+1A) (OTU#032) dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY724112.2| Uncultured bacterium clone DUNnif029 (+1A) (OTU#032) dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY724109.2| Uncultured bacterium clone DUNnif026 (+1A) (OTU#032) dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY724102.2| Uncultured bacterium clone DUNnif021 (+1A) (OTU#032) dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY724101.2| Uncultured bacterium clone DUNnif020 (+1A) (OTU#032) dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY934877.1| Sinorhizobium sp. CCBAU 53044B nitrogenase reductase (nifH) gene, partial cds Length = 755 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 174 acgtcctcgagctcgaggtct 154
>gb|AF115283.1|AF115283 Leptospira interrogans S10-spc-alpha locus, complete sequence Length = 20709 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 94 aaaccgagtggatttattttttgtcccat 122 ||||||| |||||||| |||||||||||| Sbjct: 8933 aaaccgattggatttactttttgtcccat 8905
>gb|AY912768.1| Uncultured forest soil bacterium clone DUNnif377 dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY912583.1| Uncultured forest soil bacterium clone DUNnif192 dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY912577.1| Uncultured forest soil bacterium clone DUNnif186 dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>gb|AY912569.1| Uncultured forest soil bacterium clone DUNnif178 dinitrogenase reductase (nifH) gene, partial cds Length = 353 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 172 acgtcctcgagctcgaggtct 152
>gb|AY912555.1| Uncultured forest soil bacterium clone DUNnif164 dinitrogenase reductase (nifH) gene, partial cds Length = 352 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtct 270 ||||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtct 151
>emb|CR792419.10| Zebrafish DNA sequence from clone DKEY-11A2 in linkage group 3, complete sequence Length = 61995 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 tattttttgtcccatattttt 128 ||||||||||||||||||||| Sbjct: 5909 tattttttgtcccatattttt 5929
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 94 aaaccgagtggatttattttttgtcccat 122 ||||||| |||||||| |||||||||||| Sbjct: 3466038 aaaccgattggatttactttttgtcccat 3466066
>gb|AY829685.1| Uncultured bacterium clone TF25011 nitrogenase iron protein (nifH) gene, partial cds Length = 329 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|DQ224696.1| Uncultured bacterium clone nif1004424L92 dinitrogen reductase (nifH) gene, partial cds Length = 327 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|AY787583.1| Uncultured bacterium clone 52_Z65C nitrogenase iron protein (nifH) gene, partial cds Length = 359 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 113 acgtcctcgagctcgaggtc 94
>gb|DQ059362.1| Uncultured bacterium clone 1C-4 dinitrogenase reductase (nifH) gene, partial cds Length = 383 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 209 acgtcctcgagctcgaggtc 190
>gb|AC119244.12| Mus musculus chromosome 5, clone RP24-231P10, complete sequence Length = 210235 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 573 agcccacttttcttcttctt 592 |||||||||||||||||||| Sbjct: 12813 agcccacttttcttcttctt 12794
>gb|AC125025.7| Mus musculus chromosome 5, clone RP24-340K5, complete sequence Length = 175313 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 573 agcccacttttcttcttctt 592 |||||||||||||||||||| Sbjct: 158360 agcccacttttcttcttctt 158341
>gb|AC168148.15| Medicago truncatula clone mth2-80b11, complete sequence Length = 111889 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 tattttttgtcccatatttttcta 131 ||||||||||||||||| |||||| Sbjct: 80643 tattttttgtcccatatgtttcta 80666
>gb|DQ481381.1| Uncultured microorganism clone 19390A6 dinitrogenase reductase (nifH) gene, partial cds Length = 325 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 96 acgtcctcgagctcgaggtc 77
>gb|DQ481379.1| Uncultured microorganism clone 19390A3 dinitrogenase reductase (nifH) gene, partial cds Length = 325 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 96 acgtcctcgagctcgaggtc 77
>gb|DQ481376.1| Uncultured microorganism clone 19390A15 dinitrogenase reductase (nifH) gene, partial cds Length = 325 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 96 acgtcctcgagctcgaggtc 77
>gb|DQ481374.1| Uncultured microorganism clone 19390A13 dinitrogenase reductase (nifH) gene, partial cds Length = 325 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 96 acgtcctcgagctcgaggtc 77
>gb|DQ481034.1| Uncultured bacterium clone LT-CLY_21 dinitrogenase reductase (nifH) gene, partial cds Length = 329 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|DQ480917.1| Uncultured bacterium clone UT-CLY_45 dinitrogenase reductase (nifH) gene, partial cds Length = 329 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|DQ396875.1| Scenedesmus obliquus strain UTEX 393 chloroplast, complete genome Length = 161452 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 attttttgtcccatattttt 128 |||||||||||||||||||| Sbjct: 26139 attttttgtcccatattttt 26158
>gb|AF389713.1| Uncultured bacterium clone SIW2-3 dinitrogenase reductase (nifH) gene, partial cds Length = 414 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtc 172
>gb|AF315428.1| Uncultured temperate forest soil bacterium CF018a dinitrogenase reductase (nifH) gene, partial cds Length = 397 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 171 acgtcctcgagctcgaggtc 152
>gb|AF035492.1| Uncultured bacterium NR1608 dinitrogenase reductase (nifH) gene, partial cds Length = 324 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|AF035505.1| Uncultured bacterium NR1621 dinitrogenase reductase (nifH) gene, partial cds Length = 327 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|AY221811.1| Sinorhizobium meliloti clone CC1079A1 dinitrogenase reductase (nifH) gene, partial cds Length = 324 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 cgtcctcgagctcgaggtct 270 |||||||||||||||||||| Sbjct: 94 cgtcctcgagctcgaggtct 75
>gb|AC122399.4| Mus musculus BAC clone RP24-92B2 from chromosome 17, complete sequence Length = 184002 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 615 agtttgaaacttgtcataaa 634 |||||||||||||||||||| Sbjct: 149609 agtttgaaacttgtcataaa 149628
>gb|AY196461.1| Uncultured nitrogen-fixing bacterium clone f1-PA3 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AY196457.1| Uncultured nitrogen-fixing bacterium clone f1-HW9 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AY196456.1| Uncultured nitrogen-fixing bacterium clone f1-HW8 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AY196454.1| Uncultured nitrogen-fixing bacterium clone f1-HW5 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AY196452.1| Uncultured nitrogen-fixing bacterium clone f1-HW3 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AY196451.1| Uncultured nitrogen-fixing bacterium clone f1-HW2 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AY196450.1| Uncultured nitrogen-fixing bacterium clone f1-HW10 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AY196422.1| Uncultured nitrogen-fixing bacterium clone g1-HA1 nitrogenase iron protein (nifH) gene, partial cds Length = 368 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|AC125101.3| Mus musculus BAC clone RP24-207F9 from chromosome 19, complete sequence Length = 162162 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 575 cccacttttcttcttctttatcct 598 ||||||||||||||||||| |||| Sbjct: 128312 cccacttttcttcttctttttcct 128335
>gb|AY458644.1| Uncultured bacterium 562 clone EBAC000-45B06 genomic sequence Length = 61185 Score = 40.1 bits (20), Expect = 9.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 83 taccaagtctaaaaccgagtggatttattttttgtcccat 122 |||| ||||||||||| |||||||| |||||||||||| Sbjct: 40344 tacctagtctaaaacctgttggatttactttttgtcccat 40305
>emb|CR762383.11| Zebrafish DNA sequence from clone DKEY-28M7 in linkage group 6, complete sequence Length = 101572 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 ttgtcccatatttttctattctat 137 |||||||||||||| ||||||||| Sbjct: 63262 ttgtcccatattttactattctat 63285
>gb|AC127240.3| Mus musculus BAC clone RP24-387H11 from chromosome 8, complete sequence Length = 212579 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 567 ttccttagcccacttttctt 586 |||||||||||||||||||| Sbjct: 143246 ttccttagcccacttttctt 143227
>emb|CR388077.11| Zebrafish DNA sequence from clone CH211-286E11 in linkage group 8, complete sequence Length = 192705 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 tttagatttctttactatat 203 |||||||||||||||||||| Sbjct: 139207 tttagatttctttactatat 139226
>gb|AY372454.1| Uncultured marine gamma proteobacterium EB000-45B06 fosmid clone Length = 61173 Score = 40.1 bits (20), Expect = 9.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 83 taccaagtctaaaaccgagtggatttattttttgtcccat 122 |||| ||||||||||| |||||||| |||||||||||| Sbjct: 40343 tacctagtctaaaacctgttggatttactttttgtcccat 40304
>emb|AL355132.19| Human DNA sequence from clone RP11-181D10 on chromosome 13 Contains a ring finger protein 12 (RNF12) pseudogene, the 5' end of the FOXO1A gene for forkhead box O1A (rhabdomyosarcoma), the 3' end of the MRPS31 gene for mitochondrial ribosomal protein S31 and a CpG island, complete sequence Length = 151261 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 576 ccacttttcttcttctttat 595 |||||||||||||||||||| Sbjct: 101412 ccacttttcttcttctttat 101431
>emb|AL356374.13| Human DNA sequence from clone RP11-454P17 on chromosome 6, complete sequence Length = 21183 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 gatttattttttgtcccatatttt 127 ||||||||||||| |||||||||| Sbjct: 10235 gatttattttttgacccatatttt 10212
>emb|AL034451.26|HS191E19 Human DNA sequence from clone RP1-191E19 on chromosome 6q23.2-24.2, complete sequence Length = 110885 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 aactctttgtgctttgaaaa 486 |||||||||||||||||||| Sbjct: 86786 aactctttgtgctttgaaaa 86767
>emb|Z47547.1|MTCCGNME Chondrus crispus complete mitochondrial genome Length = 25836 Score = 40.1 bits (20), Expect = 9.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 79 gttgtaccaagtctaaaaccgagtggatttattttttgtcccat 122 ||||| ||||||||||||| | |||||| ||||||||| |||| Sbjct: 6346 gttgttccaagtctaaaacttattggattaattttttgtgccat 6303
>emb|X13327.1|CHSCPSBA Secale cereale chloroplast psbA gene for herbicide-binding protein D1 Length = 2729 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 682 cttcttaatctttctattca 701 |||||||||||||||||||| Sbjct: 2411 cttcttaatctttctattca 2430
>emb|BX323591.13| Zebrafish DNA sequence from clone CH211-208C6 in linkage group 7 Contains the gene for a novel protein similar to vertebrate suppression of tumorigenicity 5 (ST5), a novel gene, the gene for a novel protein similar to vertebrate RAS-like estrogen-regulated growth-inhibitor (RERG) and the gene for a novel protein similar to vertebrate serine/threonine kinase 33 (STK33), complete sequence Length = 201768 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 651 ctacctttactttattttga 670 |||||||||||||||||||| Sbjct: 53855 ctacctttactttattttga 53874
>gb|AC149070.3| Xenopus tropicalis clone ISB1-185H2, complete sequence Length = 99046 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 tttctttactatatttagtacaat 213 ||||||||||||||| |||||||| Sbjct: 9200 tttctttactatattgagtacaat 9223
>dbj|AB188119.1| Rubrivivax gelatinosus nifH gene for iron protein of nitrogenase, partial cds, strain:IAM 14808 Length = 416 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 182 acgtcctcgagctcgaggtc 163
>gb|DQ398434.1| Uncultured cyanobacterium clone FALLSnif02D05 dinitrogen reductase (nifH) gene, partial cds Length = 324 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|DQ398411.1| Uncultured cyanobacterium clone FALLSnif02A03 dinitrogen reductase (nifH) gene, partial cds Length = 327 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 aatgaataaattcgctttgg 332 |||||||||||||||||||| Sbjct: 1633670 aatgaataaattcgctttgg 1633651
>gb|DQ426402.1| Uncultured bacterium clone 29.170 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426393.1| Uncultured bacterium clone 29.160 NifH-like (nifH) gene, partial sequence Length = 339 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 116 acgtcctcgagctcgaggtc 97
>gb|DQ426380.1| Uncultured bacterium clone 29.145 NifH-like (nifH) gene, partial sequence Length = 336 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 113 acgtcctcgagctcgaggtc 94
>gb|DQ426374.1| Uncultured bacterium clone 29.138 NifH-like (nifH) gene, partial sequence Length = 330 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 107 acgtcctcgagctcgaggtc 88
>gb|DQ426367.1| Uncultured bacterium clone 29.130 NifH-like (nifH) gene, partial sequence Length = 333 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 110 acgtcctcgagctcgaggtc 91
>gb|DQ426354.1| Uncultured bacterium clone 29.116 NifH-like (nifH) gene, partial sequence Length = 288 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 65 acgtcctcgagctcgaggtc 46
>gb|DQ426352.1| Uncultured bacterium clone 29.114 NifH-like (nifH) gene, partial sequence Length = 333 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 110 acgtcctcgagctcgaggtc 91
>gb|DQ426346.1| Uncultured bacterium clone 29.105 NifH-like (nifH) gene, partial sequence Length = 338 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 114 acgtcctcgagctcgaggtc 95
>gb|DQ426320.1| Uncultured bacterium clone 29.76 NifH-like (nifH) gene, partial sequence Length = 318 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426319.1| Uncultured bacterium clone 29.75 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426309.1| Uncultured bacterium clone 29.65 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426297.1| Uncultured bacterium clone 29.53 NifH-like (nifH) gene, partial sequence Length = 312 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426294.1| Uncultured bacterium clone 29.48 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426289.1| Uncultured bacterium clone 29.43 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426283.1| Uncultured bacterium clone 29.36 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ426270.1| Uncultured bacterium clone 29.12 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>gb|DQ425739.1| Uncultured bacterium clone 7.142 NifH-like (nifH) gene, partial sequence Length = 315 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 92 acgtcctcgagctcgaggtc 73
>emb|X07521.1|HVD1PSBA Hordeum vulgare chloroplast psbA gene for D1 protein of photosystem II Length = 1428 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 682 cttcttaatctttctattca 701 |||||||||||||||||||| Sbjct: 1403 cttcttaatctttctattca 1422
>gb|DQ140599.1| Uncultured bacterium clone nif1003301M15 dinitrogen reductase (nifH) gene, partial cds Length = 327 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|U97122.1|U97122 Azoarcus tolulyticus nitrogenase iron protein (nifH) gene, partial cds Length = 336 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 179 acgtcctcgagctcgaggtc 160
>gb|AF216931.1|AF216931 Unidentified nitrogen-fixing bacteria clone F2 dinitrogenase reductase (nifH) gene, partial cds Length = 417 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 191 acgtcctcgagctcgaggtc 172
>gb|AC175058.1| Mus musculus BAC clone RP23-210C4 from chromosome 17, complete sequence Length = 218488 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 615 agtttgaaacttgtcataaa 634 |||||||||||||||||||| Sbjct: 128046 agtttgaaacttgtcataaa 128027
>dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence Length = 640681 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ttgtcccatatttttctatt 133 |||||||||||||||||||| Sbjct: 111779 ttgtcccatatttttctatt 111798
>emb|AL954710.27| Mouse DNA sequence from clone RP23-275J10 on chromosome 4, complete sequence Length = 202551 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 475 gtgctttgaaaacagacataggga 498 |||||||||||||| ||||||||| Sbjct: 115047 gtgctttgaaaacaaacataggga 115024
>gb|AC144364.3| Didelphis virginiana clone LB3-157N2, complete sequence Length = 140935 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 cttttcttcttctttatcct 598 |||||||||||||||||||| Sbjct: 3454 cttttcttcttctttatcct 3473
>gb|AF046840.1|AF046840 Marine proteobacterium 'Sippewissett 2-21' nitrogenase reductase (nifH) gene, partial cds Length = 324 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|AF046836.1|AF046836 Marine proteobacterium 'Bird Shoal 8-1' nitrogenase reductase (nifH) gene, partial cds Length = 324 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>gb|AF046830.1|AF046830 Marine proteobacterium 'Bird Shoal 1-2' nitrogenase reductase (nifH) gene, partial cds Length = 324 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 acgtcctcgagctcgaggtc 269 |||||||||||||||||||| Sbjct: 95 acgtcctcgagctcgaggtc 76
>emb|CT010450.15| Mouse DNA sequence from clone RP23-443B9 on chromosome 12, complete sequence Length = 193155 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ctatatttagtacaattgtt 217 |||||||||||||||||||| Sbjct: 36287 ctatatttagtacaattgtt 36268
>gb|AC138397.4| Mus musculus BAC clone RP23-65O11 from 8, complete sequence Length = 246976 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 567 ttccttagcccacttttctt 586 |||||||||||||||||||| Sbjct: 224303 ttccttagcccacttttctt 224322
>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold Length = 1751794 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 cttttcttcttctttatcct 598 |||||||||||||||||||| Sbjct: 3454 cttttcttcttctttatcct 3473 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,868,705 Number of Sequences: 3902068 Number of extensions: 7868705 Number of successful extensions: 154276 Number of sequences better than 10.0: 254 Number of HSP's better than 10.0 without gapping: 257 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 152568 Number of HSP's gapped (non-prelim): 1513 length of query: 701 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 678 effective length of database: 17,143,297,704 effective search space: 11623155843312 effective search space used: 11623155843312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
