ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd16e08 |
|---|---|
| Clone Library Name | barley_pub |
>YCF45_PORPU (P51281) Hypothetical 64.2 kDa protein ycf45 (ORF565)| Length = 565 Score = 195 bits (495), Expect = 1e-49 Identities = 93/159 (58%), Positives = 123/159 (77%), Gaps = 1/159 (0%) Frame = -2 Query: 660 PHAAIGGARRMQVPEPSMQHRVMIEAVENHMPEVVIVDEIGTESEAQACRSIAERGVMLI 481 PH AIG ARRMQV +P +QH+VMIEAVENHMPEV+I+DEIGTE EA A R+IAERGV L+ Sbjct: 171 PHPAIGRARRMQVAQPDLQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLV 230 Query: 480 GTAHGERLANIIKNPVLSDLVGGVETVTLGDEEARARRTQKSILERKAPPTFPFLIEMRE 301 GTAHG L ++IKNP L+DL+GG++ VTLGD+EA+ R TQKSILERKA P F IE+ + Sbjct: 231 GTAHGNYLESLIKNPTLADLIGGIQYVTLGDDEAKRRGTQKSILERKAAPAFQIAIEIHD 290 Query: 300 RHYWVTH-RTERSVDMLLHGKKPLVEVRKRDNEFQVIIE 187 R W+ H + E ++D +L G +P V+ R+ + +++I+ Sbjct: 291 RKAWIVHEKVEETIDQILQGHQPFVQKRQIQDNGRILIK 329
>YCF45_ODOSI (P49540) Hypothetical 51.9 kDa protein ycf45 (ORF455)| Length = 455 Score = 171 bits (434), Expect = 1e-42 Identities = 84/149 (56%), Positives = 110/149 (73%), Gaps = 1/149 (0%) Frame = -2 Query: 660 PHAAIGGARRMQVPEPSMQHRVMIEAVENHMPEVVIVDEIGTESEAQACRSIAERGVMLI 481 PH+AIG ARRMQV +QH++MIEAVENHMP+V+++DEIGTE EA A R+IAE+GV L+ Sbjct: 171 PHSAIGRARRMQVATTDLQHQIMIEAVENHMPQVIVIDEIGTELEALAARTIAEKGVQLV 230 Query: 480 GTAHGERLANIIKNPVLSDLVGGVETVTLGDEEARARRTQKSILERKAPPTFPFLIEMRE 301 GT HG L N+IKNP LSDL+GG+++VTL D+EA+ R TQKSI+ERKA P F IE+ Sbjct: 231 GTTHGNCLENLIKNPPLSDLIGGIQSVTLSDDEAKRRGTQKSIIERKAYPAFQIAIEINT 290 Query: 300 RHYWVTHR-TERSVDMLLHGKKPLVEVRK 217 + W H + S+D+LL +VR+ Sbjct: 291 ENSWTIHEDIKSSIDLLLRKSFTGTQVRE 319
>YCF45_CYACA (O19920) Hypothetical 37.9 kDa protein ycf45| Length = 335 Score = 142 bits (358), Expect = 9e-34 Identities = 74/148 (50%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Frame = -2 Query: 660 PHAAIGGARRMQVPEPSMQHRVMIEAVENHMPEVVIVDEIGTESEAQACRSIAERGVMLI 481 PH + G ARRM+V + QH VMIEA+ENH PE++I+DEIGTE E+QA SI++RG+ LI Sbjct: 171 PHISTGKARRMEVQSINSQHEVMIEAIENHTPEIIIIDEIGTEYESQAAISISQRGIRLI 230 Query: 480 GTAHGERLANIIKNPVLSDLVGGVETVTLGDEEARARRTQKSILERKAPPTFPFLIEM-R 304 G+AH L N+ KNP L LVGG+E+VTL D +A R+T+K+ILERK F IE+ + Sbjct: 231 GSAHSSDLFNLAKNPTLCKLVGGIESVTLSDTQAILRKTKKTILERKGCSCFNATIEINK 290 Query: 303 ERHYWVTHRTERSVDMLLHGKKPLVEVR 220 +R V E+S+D +L G+ ++R Sbjct: 291 KRTVKVYTSVEQSIDAILEGRVNNSQIR 318
>SP3AA_BACSU (Q01367) Stage III sporulation protein AA| Length = 307 Score = 41.2 bits (95), Expect = 0.003 Identities = 22/72 (30%), Positives = 39/72 (54%) Frame = -2 Query: 636 RRMQVPEPSMQHRVMIEAVENHMPEVVIVDEIGTESEAQACRSIAERGVMLIGTAHGERL 457 +R+ V + + ++ + + PEV+IVDEIG + A GV +I +AHG + Sbjct: 195 QRIDVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLEALHAGVSVIVSAHGWSI 254 Query: 456 ANIIKNPVLSDL 421 ++++K P L L Sbjct: 255 SDLMKRPSLKRL 266
>CBIO_BIFLO (Q8G838) Cobalt import ATP-binding/permease protein cbiO| Length = 780 Score = 32.7 bits (73), Expect = 0.99 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 12/90 (13%) Frame = -2 Query: 567 PEVVIVDEIGTESEAQA-------CRSIAERGVMLIGTAH----GERLAN-IIKNPVLSD 424 P+V+I+DE +AQA R++ RGV ++ H E++A+ +++ P+ + Sbjct: 450 PDVLIMDEPTASLDAQAKKRIHELLRTLKSRGVTVLIITHDREEAEQIADRVVRMPIAAP 509 Query: 423 LVGGVETVTLGDEEARARRTQKSILERKAP 334 GG T T+ + + S++ R P Sbjct: 510 ASGGPVTATVTEPAVSSNGPAHSVIHRLDP 539
>AHR_MUSMC (Q8R4S6) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 848 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +1 Query: 259 IDTPLSPMSDPIVSLPHLNKKRKCW--RGLPLQYTFLSTSCTSFLITKSDSFYSSNQVR* 432 I +P SP+ DP+ N RK W + P + +F +S S LI + +S Y Sbjct: 410 ISSPFSPIMDPLPIRTKSNTSRKDWAPQSTPSKDSFHPSSLMSALIQQDESIY------- 462 Query: 433 NWILYNVCKPFSVGSTNKHY 492 +C P S + H+ Sbjct: 463 ------LCPPSSPAPLDSHF 476
>AHR_MOUSE (P30561) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 848 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +1 Query: 259 IDTPLSPMSDPIVSLPHLNKKRKCW--RGLPLQYTFLSTSCTSFLITKSDSFYSSNQVR* 432 I +P SP+ DP+ N RK W + P + +F +S S LI + +S Y Sbjct: 410 ISSPFSPIMDPLPIRTKSNTSRKDWAPQSTPSKDSFHPSSLMSALIQQDESIY------- 462 Query: 433 NWILYNVCKPFSVGSTNKHY 492 +C P S + H+ Sbjct: 463 ------LCPPSSPAPLDSHF 476
>AHR_MUSMM (Q8R4S5) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 883 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +1 Query: 259 IDTPLSPMSDPIVSLPHLNKKRKCW--RGLPLQYTFLSTSCTSFLITKSDSFYSSNQVR* 432 I +P SP+ DP+ N RK W + P + +F +S S LI + +S Y Sbjct: 410 ISSPFSPIMDPLPIRTKSNTSRKDWAPQSTPSKDSFHPSSLMSALIQQDESIY------- 462 Query: 433 NWILYNVCKPFSVGSTNKHY 492 +C P S + H+ Sbjct: 463 ------LCPPSSPAPLDSHF 476
>AHR_MUSSP (Q8R4S2) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 854 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +1 Query: 259 IDTPLSPMSDPIVSLPHLNKKRKCW--RGLPLQYTFLSTSCTSFLITKSDSFYSSNQVR* 432 I +P SP+ DP+ N RK W + P + +F +S S LI + +S Y Sbjct: 414 ISSPFSPIMDPLPIRTKSNTSRKDWAPQSTPSKDSFHPSSLMSALIQQDESIY------- 466 Query: 433 NWILYNVCKPFSVGSTNKHY 492 +C P S + H+ Sbjct: 467 ------LCPPSSPAPLDSHF 480
>AHR_MUSSI (Q8R4S4) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 854 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +1 Query: 259 IDTPLSPMSDPIVSLPHLNKKRKCW--RGLPLQYTFLSTSCTSFLITKSDSFYSSNQVR* 432 I +P SP+ DP+ N RK W + P + +F +S S LI + +S Y Sbjct: 414 ISSPFSPIMDPLPIRTKSNTSRKDWAPQSTPSKDSFHPSSLMSALIQQDESIY------- 466 Query: 433 NWILYNVCKPFSVGSTNKHY 492 +C P S + H+ Sbjct: 467 ------LCPPSSPAPLDSHF 480
>AHR_MUSCR (Q8R4S7) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 854 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +1 Query: 259 IDTPLSPMSDPIVSLPHLNKKRKCW--RGLPLQYTFLSTSCTSFLITKSDSFYSSNQVR* 432 I +P SP+ DP+ N RK W + P + +F +S S LI + +S Y Sbjct: 414 ISSPFSPIMDPLPIRAKSNTSRKDWAPQSTPSKDSFHPSSLMSALIQQDESIY------- 466 Query: 433 NWILYNVCKPFSVGSTNKHY 492 +C P S + H+ Sbjct: 467 ------LCPPSSPAPLDSHF 480
>AHR_RAT (P41738) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 853 Score = 32.0 bits (71), Expect = 1.7 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Frame = +1 Query: 259 IDTPLSPMSDPIVSLPHLNKKRKCW--RGLPLQYTFLSTSCTSFLITKSDSFYSSNQVR* 432 I +P SP+ DP+ N RK W + P + +F S S LI + +S Y Sbjct: 414 ISSPFSPIMDPLPIRTKSNTSRKDWAPQSTPSKDSFHPNSLMSALIQQDESIY------- 466 Query: 433 NWILYNVCKPFSVGSTNKHY 492 +C P S + H+ Sbjct: 467 ------LCPPSSPAPLDSHF 480
>DRD1_RAT (P18901) D(1A) dopamine receptor| Length = 446 Score = 30.8 bits (68), Expect = 3.7 Identities = 19/63 (30%), Positives = 29/63 (46%) Frame = +2 Query: 422 KSDKTGFFIMFASLSPWAVPISITPLSAIDRQACASDSVPISSTMTTSGIWFSTASIITL 601 +S T FF++ ++S V + + P A+ A P + I STASI+ L Sbjct: 54 RSKVTNFFVISLAVSDLLVAVLVMPWKAVAEIAGFWPLGPFCNIWVAFDIMCSTASILNL 113 Query: 602 CCI 610 C I Sbjct: 114 CVI 116
>PURL_HALSA (Q9HR49) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 700 Score = 30.8 bits (68), Expect = 3.7 Identities = 15/55 (27%), Positives = 28/55 (50%) Frame = -2 Query: 654 AAIGGARRMQVPEPSMQHRVMIEAVENHMPEVVIVDEIGTESEAQACRSIAERGV 490 A +GGA V + + R+ ++AV PE+ ++ + ES+ + C +A V Sbjct: 259 AGLGGASSEMVAQGELGARITLDAVHQREPEMNAMEILLAESQERMCYEVAPADV 313
>KDPD_MYCTU (P96372) Sensor protein kdpD (EC 2.7.13.3)| Length = 860 Score = 30.4 bits (67), Expect = 4.9 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 8/81 (9%) Frame = -2 Query: 591 IEAVENHMPEVVIVDEIG--------TESEAQACRSIAERGVMLIGTAHGERLANIIKNP 436 +EAV P+VV+VDE+ Q + I + G+ +I T + + L + N Sbjct: 99 VEAVLRRHPQVVLVDELAHTNTPGSKNPKRWQDVQEILDAGITVISTVNIQHLEGL--ND 156 Query: 435 VLSDLVGGVETVTLGDEEARA 373 V+ + G + + DE RA Sbjct: 157 VVEQITGIEQKEKIPDEIVRA 177
>CARB_PSEAE (P38100) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1072 Score = 29.6 bits (65), Expect = 8.3 Identities = 15/41 (36%), Positives = 26/41 (63%) Frame = -2 Query: 594 MIEAVENHMPEVVIVDEIGTESEAQACRSIAERGVMLIGTA 472 ++E V P+ VIV + G ++ + CR++ E GV +IGT+ Sbjct: 624 VLEIVRVEQPKGVIV-QYGGQTPLKLCRALEEAGVPIIGTS 663 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,448,103 Number of Sequences: 219361 Number of extensions: 1872807 Number of successful extensions: 4984 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4841 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4979 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
