ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16d22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189523.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1733 Score = 266 bits (134), Expect = 8e-68 Identities = 287/338 (84%) Strand = Plus / Minus Query: 316 cctccgaaggaaacgcggatgtatccggggcctccgctggcgctcccggggatcaccgcg 375 |||||||| ||||| ||||| |||||||| ||||| |||||||||||||||||||| || Sbjct: 1276 cctccgaaagaaacccggatatatccgggacctccactggcgctcccggggatcacagcc 1217 Query: 376 acgccgtgcttggtcgcgagccatctgacaacttcaaaatcgtctttacagttatctggt 435 || || |||||| | || ||||||||||||||||||||||| ||| || || || ||| Sbjct: 1216 acaccatgcttgtttgcaagccatctgacaacttcaaaatcatctgagcatttctcgggt 1157 Query: 436 agcttagcccagaggtagatggcaccctccccacccttgacagcatcctcgccaagggga 495 || || ||||||||||| ||||||||||| ||||||||||||| |||| |||||| ||| Sbjct: 1156 agttttgcccagaggtaaatggcaccctcaccacccttgacagagtccttgccaagcgga 1097 Query: 496 gacattgcctccacaagcagcttccggtttatcacgagatcttgcaccctttccctgatc 555 ||||| || |||| |||| | |||||| |||| |||||| ||||||||| |||||| Sbjct: 1096 gacatcgcttccatgagcaattcacggtttttcactagatctctcaccctttctctgatc 1037 Query: 556 cactctgggccagcctccaatgagtacagagccaggcgctgcccgatgatggaagcacag 615 || ||||| |||||||| |||| ||| || |||||||||||||||||||||||||||||| Sbjct: 1036 cattctggaccagcctctaatgcgtagagcgccaggcgctgcccgatgatggaagcacag 977 Query: 616 attggtatgttatcttgcaccttaaggagctgcgcatg 653 || ||||||||||||||||| || || ||||| ||||| Sbjct: 976 ataggtatgttatcttgcactttgagcagctgtgcatg 939
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 266 bits (134), Expect = 8e-68 Identities = 287/338 (84%) Strand = Plus / Plus Query: 316 cctccgaaggaaacgcggatgtatccggggcctccgctggcgctcccggggatcaccgcg 375 |||||||| ||||| ||||| |||||||| ||||| |||||||||||||||||||| || Sbjct: 4051342 cctccgaaagaaacccggatatatccgggacctccactggcgctcccggggatcacagcc 4051401 Query: 376 acgccgtgcttggtcgcgagccatctgacaacttcaaaatcgtctttacagttatctggt 435 || || |||||| | || ||||||||||||||||||||||| ||| || || || ||| Sbjct: 4051402 acaccatgcttgtttgcaagccatctgacaacttcaaaatcatctgagcatttctcgggt 4051461 Query: 436 agcttagcccagaggtagatggcaccctccccacccttgacagcatcctcgccaagggga 495 || || ||||||||||| ||||||||||| ||||||||||||| |||| |||||| ||| Sbjct: 4051462 agttttgcccagaggtaaatggcaccctcaccacccttgacagagtccttgccaagcgga 4051521 Query: 496 gacattgcctccacaagcagcttccggtttatcacgagatcttgcaccctttccctgatc 555 ||||| || |||| |||| | |||||| |||| |||||| ||||||||| |||||| Sbjct: 4051522 gacatcgcttccatgagcaattcacggtttttcactagatctctcaccctttctctgatc 4051581 Query: 556 cactctgggccagcctccaatgagtacagagccaggcgctgcccgatgatggaagcacag 615 || ||||| |||||||| |||| ||| || |||||||||||||||||||||||||||||| Sbjct: 4051582 cattctggaccagcctctaatgcgtagagcgccaggcgctgcccgatgatggaagcacag 4051641 Query: 616 attggtatgttatcttgcaccttaaggagctgcgcatg 653 || ||||||||||||||||| || || ||||| ||||| Sbjct: 4051642 ataggtatgttatcttgcactttgagcagctgtgcatg 4051679
>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0509B06 Length = 104515 Score = 266 bits (134), Expect = 8e-68 Identities = 287/338 (84%) Strand = Plus / Plus Query: 316 cctccgaaggaaacgcggatgtatccggggcctccgctggcgctcccggggatcaccgcg 375 |||||||| ||||| ||||| |||||||| ||||| |||||||||||||||||||| || Sbjct: 18085 cctccgaaagaaacccggatatatccgggacctccactggcgctcccggggatcacagcc 18144 Query: 376 acgccgtgcttggtcgcgagccatctgacaacttcaaaatcgtctttacagttatctggt 435 || || |||||| | || ||||||||||||||||||||||| ||| || || || ||| Sbjct: 18145 acaccatgcttgtttgcaagccatctgacaacttcaaaatcatctgagcatttctcgggt 18204 Query: 436 agcttagcccagaggtagatggcaccctccccacccttgacagcatcctcgccaagggga 495 || || ||||||||||| ||||||||||| ||||||||||||| |||| |||||| ||| Sbjct: 18205 agttttgcccagaggtaaatggcaccctcaccacccttgacagagtccttgccaagcgga 18264 Query: 496 gacattgcctccacaagcagcttccggtttatcacgagatcttgcaccctttccctgatc 555 ||||| || |||| |||| | |||||| |||| |||||| ||||||||| |||||| Sbjct: 18265 gacatcgcttccatgagcaattcacggtttttcactagatctctcaccctttctctgatc 18324 Query: 556 cactctgggccagcctccaatgagtacagagccaggcgctgcccgatgatggaagcacag 615 || ||||| |||||||| |||| ||| || |||||||||||||||||||||||||||||| Sbjct: 18325 cattctggaccagcctctaatgcgtagagcgccaggcgctgcccgatgatggaagcacag 18384 Query: 616 attggtatgttatcttgcaccttaaggagctgcgcatg 653 || ||||||||||||||||| || || ||||| ||||| Sbjct: 18385 ataggtatgttatcttgcactttgagcagctgtgcatg 18422
>dbj|AK120458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105O22, full insert sequence Length = 2063 Score = 266 bits (134), Expect = 8e-68 Identities = 287/338 (84%) Strand = Plus / Minus Query: 316 cctccgaaggaaacgcggatgtatccggggcctccgctggcgctcccggggatcaccgcg 375 |||||||| ||||| ||||| |||||||| ||||| |||||||||||||||||||| || Sbjct: 1619 cctccgaaagaaacccggatatatccgggacctccactggcgctcccggggatcacagcc 1560 Query: 376 acgccgtgcttggtcgcgagccatctgacaacttcaaaatcgtctttacagttatctggt 435 || || |||||| | || ||||||||||||||||||||||| ||| || || || ||| Sbjct: 1559 acaccatgcttgtttgcaagccatctgacaacttcaaaatcatctgagcatttctcgggt 1500 Query: 436 agcttagcccagaggtagatggcaccctccccacccttgacagcatcctcgccaagggga 495 || || ||||||||||| ||||||||||| ||||||||||||| |||| |||||| ||| Sbjct: 1499 agttttgcccagaggtaaatggcaccctcaccacccttgacagagtccttgccaagcgga 1440 Query: 496 gacattgcctccacaagcagcttccggtttatcacgagatcttgcaccctttccctgatc 555 ||||| || |||| |||| | |||||| |||| |||||| ||||||||| |||||| Sbjct: 1439 gacatcgcttccatgagcaattcacggtttttcactagatctctcaccctttctctgatc 1380 Query: 556 cactctgggccagcctccaatgagtacagagccaggcgctgcccgatgatggaagcacag 615 || ||||| |||||||| |||| ||| || |||||||||||||||||||||||||||||| Sbjct: 1379 cattctggaccagcctctaatgcgtagagcgccaggcgctgcccgatgatggaagcacag 1320 Query: 616 attggtatgttatcttgcaccttaaggagctgcgcatg 653 || ||||||||||||||||| || || ||||| ||||| Sbjct: 1319 ataggtatgttatcttgcactttgagcagctgtgcatg 1282
>dbj|AK067702.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119N03, full insert sequence Length = 1734 Score = 266 bits (134), Expect = 8e-68 Identities = 287/338 (84%) Strand = Plus / Minus Query: 316 cctccgaaggaaacgcggatgtatccggggcctccgctggcgctcccggggatcaccgcg 375 |||||||| ||||| ||||| |||||||| ||||| |||||||||||||||||||| || Sbjct: 1277 cctccgaaagaaacccggatatatccgggacctccactggcgctcccggggatcacagcc 1218 Query: 376 acgccgtgcttggtcgcgagccatctgacaacttcaaaatcgtctttacagttatctggt 435 || || |||||| | || ||||||||||||||||||||||| ||| || || || ||| Sbjct: 1217 acaccatgcttgtttgcaagccatctgacaacttcaaaatcatctgagcatttctcgggt 1158 Query: 436 agcttagcccagaggtagatggcaccctccccacccttgacagcatcctcgccaagggga 495 || || ||||||||||| ||||||||||| ||||||||||||| |||| |||||| ||| Sbjct: 1157 agttttgcccagaggtaaatggcaccctcaccacccttgacagagtccttgccaagcgga 1098 Query: 496 gacattgcctccacaagcagcttccggtttatcacgagatcttgcaccctttccctgatc 555 ||||| || |||| |||| | |||||| |||| |||||| ||||||||| |||||| Sbjct: 1097 gacatcgcttccatgagcaattcacggtttttcactagatctctcaccctttctctgatc 1038 Query: 556 cactctgggccagcctccaatgagtacagagccaggcgctgcccgatgatggaagcacag 615 || ||||| |||||||| |||| ||| || |||||||||||||||||||||||||||||| Sbjct: 1037 cattctggaccagcctctaatgcgtagagcgccaggcgctgcccgatgatggaagcacag 978 Query: 616 attggtatgttatcttgcaccttaaggagctgcgcatg 653 || ||||||||||||||||| || || ||||| ||||| Sbjct: 977 ataggtatgttatcttgcactttgagcagctgtgcatg 940
>emb|AL031678.2|HS816K17 Human DNA sequence from clone RP4-816K17 on chromosome 20p12.2-13 Contains the TGM3 gene for transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase) and the 5' end of the TGM6 gene for transglutaminase 6, complete sequence Length = 115857 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 298 gtgccttcctccttcagtcctccga 322 |||||| |||||||||||||||||| Sbjct: 23449 gtgcctgcctccttcagtcctccga 23473
>gb|AC122455.4| Mus musculus BAC clone RP24-263K11 from chromosome 8, complete sequence Length = 148213 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 tatgatacaagcacttgcacatta 116 ||||| |||||||||||||||||| Sbjct: 51456 tatgacacaagcacttgcacatta 51433
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 gatcaccgcgacgccgtgct 385 |||||||||||||||||||| Sbjct: 936038 gatcaccgcgacgccgtgct 936057
>emb|AL603914.3| Human DNA sequence from clone RP11-569A2 on chromosome 6 Contains a pseudogene similar to part of ribosomal protein L21 (RPL21) and part of gene KIAA1028, complete sequence Length = 45297 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 aaatgtactcttacatacaa 220 |||||||||||||||||||| Sbjct: 10495 aaatgtactcttacatacaa 10514
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 gatcaccgcgacgccgtgct 385 |||||||||||||||||||| Sbjct: 2254760 gatcaccgcgacgccgtgct 2254779
>emb|AL645726.22| Mouse DNA sequence from clone RP23-45M23 on chromosome 1, complete sequence Length = 231347 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 aagcagcttccggtttatca 529 |||||||||||||||||||| Sbjct: 171748 aagcagcttccggtttatca 171767
>dbj|AB192509.2| Sus scrofa genomic DNA, chromosome 7, BAC clone: L139G16, complete sequence Length = 157870 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ctattctgtagtatgataca 101 |||||||||||||||||||| Sbjct: 97540 ctattctgtagtatgataca 97559
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 gatcaccgcgacgccgtgct 385 |||||||||||||||||||| Sbjct: 1802417 gatcaccgcgacgccgtgct 1802436
>gb|AF134841.1|AF134841 Bos taurus ornithine transcarbamylase (OTC) mRNA, complete cds Length = 2132 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 497 acattgcctccacaagcagcttcc 520 ||||||||||||||||| |||||| Sbjct: 833 acattgcctccacaagctgcttcc 810
>ref|NM_177487.2| Bos taurus ornithine carbamoyltransferase (OTC), mRNA Length = 2132 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 497 acattgcctccacaagcagcttcc 520 ||||||||||||||||| |||||| Sbjct: 833 acattgcctccacaagctgcttcc 810
>gb|AC005679.1|F9K20 Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence Length = 90425 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 619 ggtatgttatcttgcacctt 638 |||||||||||||||||||| Sbjct: 80179 ggtatgttatcttgcacctt 80160 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,731,259 Number of Sequences: 3902068 Number of extensions: 4731259 Number of successful extensions: 108126 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107942 Number of HSP's gapped (non-prelim): 174 length of query: 658 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 635 effective length of database: 17,143,297,704 effective search space: 10885994042040 effective search space used: 10885994042040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
