ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15o18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191786.1| Oryza sativa (japonica cultivar-group), predic... 90 1e-14
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
3dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
4dbj|AK102023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
5dbj|AK073213.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
6dbj|AK060700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
7ref|NM_196552.1| Oryza sativa (japonica cultivar-group) unknown ... 48 0.041
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.041
9gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) ch... 48 0.041
10dbj|AK109893.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.041
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.041
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.64
13gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.64
14emb|AL844878.4|CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb... 44 0.64
15gb|AY596534.1| Saccharum officinarum clone SCJLLR1104A08, comple... 42 2.5
16gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.5
17gb|AC128661.3| Mus musculus BAC clone RP24-567N23 from chromosom... 42 2.5
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
19gb|AC012497.8| Homo sapiens BAC clone RP11-349I7 from 2, complet... 42 2.5
20gb|AC084657.1|CBRG46J11 Caenorhabditis briggsae cosmid G46J11, c... 42 2.5
21gb|AY072286.1| Spodoptera frugiperda 60S acidic ribosomal protei... 42 2.5
22emb|BX950864.17| Zebrafish DNA sequence from clone DKEY-158B13 i... 42 2.5
23gb|AY107714.1| Zea mays PCO121192 mRNA sequence 42 2.5
24gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.5
25gb|AC147138.3| Mus musculus BAC clone RP24-230H23 from 7, comple... 42 2.5
26gb|AC146616.3| Mus musculus BAC clone RP23-9A18 from 7, complete... 42 2.5
27gb|AC109251.9| Mus musculus chromosome 1, clone RP23-350B3, comp... 40 9.9
28ref|XM_482330.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.9
29gb|AY685219.1| Spiranthes mosaic virus 2 polyprotein gene, parti... 40 9.9
30gb|DQ474300.1| Uncultured ectomycorrhiza (Cenococcum geophilum) ... 40 9.9
31emb|CR388124.15| Zebrafish DNA sequence from clone CH211-72C8 in... 40 9.9
32gb|AC124502.4| Mus musculus BAC clone RP23-414G6 from chromosome... 40 9.9
33emb|BX649269.11| Zebrafish DNA sequence from clone CH211-195G14 ... 40 9.9
34gb|AE004298.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 9.9
35emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chr... 40 9.9
36gb|AY309087.1|AY309087S1 Chlamydomonas reinhardtii PF2 (PF2) gen... 40 9.9
37emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 9.9
38emb|BX640412.1| Bordetella pertussis strain Tohama I, complete g... 40 9.9
39emb|BX571859.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 9.9
40gb|AC093497.2| Drosophila melanogaster 3L BAC RP98-1H12 (Roswell... 40 9.9
41gb|AC091209.3| Drosophila melanogaster 3L BAC RP98-3G6 (Roswell ... 40 9.9
42emb|CR354426.9| Zebrafish DNA sequence from clone DKEY-48G21 in ... 40 9.9
43gb|AF169237.1|AF169237 Rattus norvegicus truncated estrogen rece... 40 9.9
44gb|AC018499.3| Homo sapiens chromosome 3 clone RP11-267L16 map 3... 40 9.9
45gb|AC018818.5|AC018818 Homo sapiens chromosome 3 clone RP11-266E... 40 9.9
46dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 9.9
47dbj|AK099936.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.9
48gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 9.9
49gb|AE003532.3| Drosophila melanogaster chromosome 3L, section 53... 40 9.9
50gb|AC132115.2| Mus musculus BAC clone RP24-146A13 from 1, comple... 40 9.9
51gb|M84006.1|HALHSP70 Halobacterium marismortui heat shock protei... 40 9.9
52emb|AL591495.12| Mouse DNA sequence from clone RP23-61O3 on chro... 40 9.9
53gb|AC018502.6| Homo sapiens chromosome 3 clone RP11-327H17 map 3... 40 9.9
54gb|AC018495.5| Homo sapiens chromosome 3 clone RP11-193K15 map 3... 40 9.9 
>ref|NM_191786.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1353

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                       
Query: 519 gggacgcccttgggcacctccaccgtctggcctctcaggatgtgcgtcgtcctcgggttc 578
           ||||| ||||||  ||||||||  |||| | ||| ||| |||||||||||||||||||||
Sbjct: 953 gggacacccttgcacacctccagtgtctcgtctcccagaatgtgcgtcgtcctcgggttc 894

                                            
Query: 579 gcgccgtgctggatcacgcaggtgtactcttca 611
           | |||||||| |||||| |||||||||||||||
Sbjct: 893 gggccgtgctcgatcacacaggtgtactcttca 861



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                        
Query: 314  cacctcatcgatctcctcctcgacgcagaacgtccggcactcgtcgctgcagaacgcctt 373
            |||||| ||||||||||| |||| | ||  | ||| |||||||| ||||||||| |||||
Sbjct: 1155 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 1096

                                                                
Query: 374  ctcgcccaggtacatgaaggtatccatgtcgtctcgcagcctcttcctgcag 425
            ||| ||||| |||||| || ||||| |||| |   |||||||||||||||||
Sbjct: 1095 ctctcccagatacatgtagatatccctgtcctgctgcagcctcttcctgcag 1044



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 689 cctttggcagcccaagctcaagaaatggcctgatgga 725
           |||| |||| ||| |||||||||||||||||||||||
Sbjct: 784 ccttcggcaacccgagctcaagaaatggcctgatgga 748
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                            
Query: 519      gggacgcccttgggcacctccaccgtctggcctctcaggatgtgcgtcgtcctcgggttc 578
                ||||| ||||||  ||||||||  |||| | ||| ||| |||||||||||||||||||||
Sbjct: 29955661 gggacacccttgcacacctccagtgtctcgtctcccagaatgtgcgtcgtcctcgggttc 29955602

                                                 
Query: 579      gcgccgtgctggatcacgcaggtgtactcttca 611
                | |||||||| |||||| |||||||||||||||
Sbjct: 29955601 gggccgtgctcgatcacacaggtgtactcttca 29955569



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 689      cctttggcagcccaagctcaagaaatggcctgatgga 725
                |||| |||| ||| |||||||||||||||||||||||
Sbjct: 29955492 ccttcggcaacccgagctcaagaaatggcctgatgga 29955456



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                            
Query: 314      cacctcatcgatctcctcctcgacgcagaacgtccggcactcgtcgctgcagaacgcctt 373
                |||||| ||||||||||| |||| | ||  | ||| |||||||| ||||||||| |||||
Sbjct: 29955969 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 29955910

                   
Query: 374      ctc 376
                |||
Sbjct: 29955909 ctc 29955907
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>dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0480C01
          Length = 151100

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                          
Query: 519    gggacgcccttgggcacctccaccgtctggcctctcaggatgtgcgtcgtcctcgggttc 578
              ||||| ||||||  ||||||||  |||| | ||| ||| |||||||||||||||||||||
Sbjct: 100219 gggacacccttgcacacctccagtgtctcgtctcccagaatgtgcgtcgtcctcgggttc 100160

                                               
Query: 579    gcgccgtgctggatcacgcaggtgtactcttca 611
              | |||||||| |||||| |||||||||||||||
Sbjct: 100159 gggccgtgctcgatcacacaggtgtactcttca 100127



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                   
Query: 689    cctttggcagcccaagctcaagaaatggcctgatgga 725
              |||| |||| ||| |||||||||||||||||||||||
Sbjct: 100050 ccttcggcaacccgagctcaagaaatggcctgatgga 100014



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                          
Query: 314    cacctcatcgatctcctcctcgacgcagaacgtccggcactcgtcgctgcagaacgcctt 373
              |||||| ||||||||||| |||| | ||  | ||| |||||||| ||||||||| |||||
Sbjct: 100527 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 100468

                 
Query: 374    ctc 376
              |||
Sbjct: 100467 ctc 100465
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>dbj|AK102023.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080J22, full
           insert sequence
          Length = 1285

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                       
Query: 519 gggacgcccttgggcacctccaccgtctggcctctcaggatgtgcgtcgtcctcgggttc 578
           ||||| ||||||  ||||||||  |||| | ||| ||| |||||||||||||||||||||
Sbjct: 741 gggacacccttgcacacctccagtgtctcgtctcccagaatgtgcgtcgtcctcgggttc 682

                                            
Query: 579 gcgccgtgctggatcacgcaggtgtactcttca 611
           | |||||||| |||||| |||||||||||||||
Sbjct: 681 gggccgtgctcgatcacacaggtgtactcttca 649



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                       
Query: 314 cacctcatcgatctcctcctcgacgcagaacgtccggcactcgtcgctgcagaacgcctt 373
           |||||| ||||||||||| |||| | ||  | ||| |||||||| ||||||||| |||||
Sbjct: 943 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 884

                                                               
Query: 374 ctcgcccaggtacatgaaggtatccatgtcgtctcgcagcctcttcctgcag 425
           ||| ||||| |||||| || ||||| |||| |   |||||||||||||||||
Sbjct: 883 ctctcccagatacatgtagatatccctgtcctgctgcagcctcttcctgcag 832



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 689 cctttggcagcccaagctcaagaaatggcctgatgga 725
           |||| |||| ||| |||||||||||||||||||||||
Sbjct: 572 ccttcggcaacccgagctcaagaaatggcctgatgga 536
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>dbj|AK073213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033014N20, full
           insert sequence
          Length = 1420

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                       
Query: 519 gggacgcccttgggcacctccaccgtctggcctctcaggatgtgcgtcgtcctcgggttc 578
           ||||| ||||||  ||||||||  |||| | ||| ||| |||||||||||||||||||||
Sbjct: 881 gggacacccttgcacacctccagtgtctcgtctcccagaatgtgcgtcgtcctcgggttc 822

                                            
Query: 579 gcgccgtgctggatcacgcaggtgtactcttca 611
           | |||||||| |||||| |||||||||||||||
Sbjct: 821 gggccgtgctcgatcacacaggtgtactcttca 789



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                        
Query: 314  cacctcatcgatctcctcctcgacgcagaacgtccggcactcgtcgctgcagaacgcctt 373
            |||||| ||||||||||| |||| | ||  | ||| |||||||| ||||||||| |||||
Sbjct: 1083 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 1024

                                                                
Query: 374  ctcgcccaggtacatgaaggtatccatgtcgtctcgcagcctcttcctgcag 425
            ||| ||||| |||||| || ||||| |||| |   |||||||||||||||||
Sbjct: 1023 ctctcccagatacatgtagatatccctgtcctgctgcagcctcttcctgcag 972



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 689 cctttggcagcccaagctcaagaaatggcctgatgga 725
           |||| |||| ||| |||||||||||||||||||||||
Sbjct: 712 ccttcggcaacccgagctcaagaaatggcctgatgga 676
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>dbj|AK060700.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F10, full
           insert sequence
          Length = 1352

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 81/93 (87%)
 Strand = Plus / Minus

                                                                       
Query: 519 gggacgcccttgggcacctccaccgtctggcctctcaggatgtgcgtcgtcctcgggttc 578
           ||||| ||||||  ||||||||  |||| | ||| ||| |||||||||||||||||||||
Sbjct: 791 gggacacccttgcacacctccagtgtctcgtctcccagaatgtgcgtcgtcctcgggttc 732

                                            
Query: 579 gcgccgtgctggatcacgcaggtgtactcttca 611
           | |||||||| |||||| |||||||||||||||
Sbjct: 731 gggccgtgctcgatcacacaggtgtactcttca 699



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                       
Query: 314 cacctcatcgatctcctcctcgacgcagaacgtccggcactcgtcgctgcagaacgcctt 373
           |||||| ||||||||||| |||| | ||  | ||| |||||||| ||||||||| |||||
Sbjct: 993 cacctcctcgatctcctcatcgatgtagtccctcctgcactcgttgctgcagaatgcctt 934

                                                               
Query: 374 ctcgcccaggtacatgaaggtatccatgtcgtctcgcagcctcttcctgcag 425
           ||| ||||| |||||| || ||||| |||| |   |||||||||||||||||
Sbjct: 933 ctctcccagatacatgtagatatccctgtcctgctgcagcctcttcctgcag 882



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 689 cctttggcagcccaagctcaagaaatggcctgatgga 725
           |||| |||| ||| |||||||||||||||||||||||
Sbjct: 622 ccttcggcaacccgagctcaagaaatggcctgatgga 586
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>ref|NM_196552.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0075H14.8), mRNA
          Length = 3408

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 557 gatgtgcgtcgtcctcgggttcgcgccgtgctggatcacgcaggtgta 604
           ||||||||||||||||||||| || ||| ||  ||| |||||||||||
Sbjct: 918 gatgtgcgtcgtcctcgggttggccccgcgcgcgatgacgcaggtgta 871
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                                
Query: 557      gatgtgcgtcgtcctcgggttcgcgccgtgctggatcacgcaggtgta 604
                ||||||||||||||||||||| || ||| ||  ||| |||||||||||
Sbjct: 14447711 gatgtgcgtcgtcctcgggttggccccgcgcgcgatgacgcaggtgta 14447758
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>gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0075H14,
             complete sequence
          Length = 155420

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 557   gatgtgcgtcgtcctcgggttcgcgccgtgctggatcacgcaggtgta 604
             ||||||||||||||||||||| || ||| ||  ||| |||||||||||
Sbjct: 62074 gatgtgcgtcgtcctcgggttggccccgcgcgcgatgacgcaggtgta 62121
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>dbj|AK109893.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E09, full
           insert sequence
          Length = 1615

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 557 gatgtgcgtcgtcctcgggttcgcgccgtgctggatcacgcaggtgta 604
           ||||||||||||||||||||| || ||| ||  ||| |||||||||||
Sbjct: 876 gatgtgcgtcgtcctcgggttggccccgcgcgcgatgacgcaggtgta 829
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                                
Query: 557      gatgtgcgtcgtcctcgggttcgcgccgtgctggatcacgcaggtgta 604
                ||||||||||||||||||||| || ||| ||  ||| |||||||||||
Sbjct: 14455953 gatgtgcgtcgtcctcgggttggccccgcgcgcgatgacgcaggtgta 14456000
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 563      cgtcgtcctcgggttcgcgccgtgct 588
                |||||| |||||||||||||||||||
Sbjct: 23751747 cgtcgtgctcgggttcgcgccgtgct 23751772
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 563      cgtcgtcctcgggttcgcgccgtgct 588
                |||||| |||||||||||||||||||
Sbjct: 23679946 cgtcgtgctcgggttcgcgccgtgct 23679971
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>emb|AL844878.4|CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb0036A19 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 128795

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 563  cgtcgtcctcgggttcgcgccgtgct 588
            |||||| |||||||||||||||||||
Sbjct: 3863 cgtcgtgctcgggttcgcgccgtgct 3838
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>gb|AY596534.1| Saccharum officinarum clone SCJLLR1104A08, complete sequence
          Length = 1065

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 347 ccggcactcgtcgctgcagaacgcc 371
           ||||||||| |||||||||||||||
Sbjct: 414 ccggcactcctcgctgcagaacgcc 390
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>gb|AC108870.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0682E05, complete sequence
          Length = 162223

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 347   ccggcactcgtcgctgcagaacgcc 371
             |||||| ||||||||||||||||||
Sbjct: 75435 ccggcagtcgtcgctgcagaacgcc 75411
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>gb|AC128661.3| Mus musculus BAC clone RP24-567N23 from chromosome 7, complete sequence
          Length = 151249

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 198   tccaaaccaaaacaagaagaa 218
             |||||||||||||||||||||
Sbjct: 94770 tccaaaccaaaacaagaagaa 94750
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 347      ccggcactcgtcgctgcagaacgcc 371
                |||||| ||||||||||||||||||
Sbjct: 25585388 ccggcagtcgtcgctgcagaacgcc 25585364
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>gb|AC012497.8| Homo sapiens BAC clone RP11-349I7 from 2, complete sequence
          Length = 212104

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 34   accattctaacaggcacaaaa 54
            |||||||||||||||||||||
Sbjct: 7135 accattctaacaggcacaaaa 7155
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>gb|AC084657.1|CBRG46J11 Caenorhabditis briggsae cosmid G46J11, complete sequence
          Length = 36926

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 439   cagaagcagcgccatcagctggcat 463
             |||||||||| ||||||||||||||
Sbjct: 26719 cagaagcagctccatcagctggcat 26695
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>gb|AY072286.1| Spodoptera frugiperda 60S acidic ribosomal protein P2 mRNA,
           complete cds
          Length = 430

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 444 gcagcgccatcagctggcatggacg 468
           ||||||||| |||||||||||||||
Sbjct: 272 gcagcgccaccagctggcatggacg 248
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>emb|BX950864.17| Zebrafish DNA sequence from clone DKEY-158B13 in linkage group 19,
             complete sequence
          Length = 185429

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 532   gcacctccaccgtctggcctctcaggatg 560
             |||||||||||||||| |||||| |||||
Sbjct: 37641 gcacctccaccgtctgtcctctccggatg 37613
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>gb|AY107714.1| Zea mays PCO121192 mRNA sequence
          Length = 742

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 347 ccggcactcgtcgctgcagaacgcc 371
           ||||||||| |||||||||||||||
Sbjct: 357 ccggcactcctcgctgcagaacgcc 333
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 347      ccggcactcgtcgctgcagaacgcc 371
                |||||| ||||||||||||||||||
Sbjct: 25904058 ccggcagtcgtcgctgcagaacgcc 25904034
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>gb|AC147138.3| Mus musculus BAC clone RP24-230H23 from 7, complete sequence
          Length = 189381

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 198    tccaaaccaaaacaagaagaa 218
              |||||||||||||||||||||
Sbjct: 188485 tccaaaccaaaacaagaagaa 188465
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>gb|AC146616.3| Mus musculus BAC clone RP23-9A18 from 7, complete sequence
          Length = 198813

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 198    tccaaaccaaaacaagaagaa 218
              |||||||||||||||||||||
Sbjct: 135103 tccaaaccaaaacaagaagaa 135123
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>gb|AC109251.9| Mus musculus chromosome 1, clone RP23-350B3, complete sequence
          Length = 188481

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 596   gcaggtgtactcttcatctt 615
             ||||||||||||||||||||
Sbjct: 82500 gcaggtgtactcttcatctt 82519
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>ref|XM_482330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1113

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 359 gctgcagaacgccttctcgcccaggtacatgaaggt 394
           ||||||||||||| | ||||||  ||||||||||||
Sbjct: 664 gctgcagaacgccgtgtcgcccttgtacatgaaggt 629
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>gb|AY685219.1| Spiranthes mosaic virus 2 polyprotein gene, partial cds
          Length = 1630

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 605 ctcttcatcttcacaatcac 624
           ||||||||||||||||||||
Sbjct: 552 ctcttcatcttcacaatcac 533
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>gb|DQ474300.1| Uncultured ectomycorrhiza (Cenococcum geophilum) clone SWUBC100 18S
           ribosomal RNA gene, partial sequence; internal
           transcribed spacer 1, complete sequence; and 5.8S
           ribosomal RNA gene, partial sequence
          Length = 829

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 388 tgaaggtatccatgtcgtct 407
           ||||||||||||||||||||
Sbjct: 263 tgaaggtatccatgtcgtct 244
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>emb|CR388124.15| Zebrafish DNA sequence from clone CH211-72C8 in linkage group 15,
            complete sequence
          Length = 173535

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 435  gaaccagaagcagcgccatc 454
            ||||||||||||||||||||
Sbjct: 7296 gaaccagaagcagcgccatc 7315
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>gb|AC124502.4| Mus musculus BAC clone RP23-414G6 from chromosome 19, complete sequence
          Length = 219212

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   aaaccaaaacaagaagaaac 220
             ||||||||||||||||||||
Sbjct: 44930 aaaccaaaacaagaagaaac 44949
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>emb|BX649269.11| Zebrafish DNA sequence from clone CH211-195G14 in linkage group 13,
             complete sequence
          Length = 141533

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 608   ttcatcttcacaatcacaat 627
             ||||||||||||||||||||
Sbjct: 19957 ttcatcttcacaatcacaat 19938
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>gb|AE004298.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 206
            of 251 of the complete chromosome
          Length = 11695

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 486  atgggctcaatggtgaaaat 505
            ||||||||||||||||||||
Sbjct: 1830 atgggctcaatggtgaaaat 1811
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>emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chromosome 9 Contains an
              alpha type 7 proteasome subunit (PSMA7) pseudogene, the 3'
              end of a novel gene, a novel gene and a CpG island,
              complete sequence
          Length = 182653

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 607    cttcatcttcacaatcacaa 626
              ||||||||||||||||||||
Sbjct: 153670 cttcatcttcacaatcacaa 153689
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>gb|AY309087.1|AY309087S1 Chlamydomonas reinhardtii PF2 (PF2) gene, exons 1 through 11
          Length = 7433

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 396  tccatgtcgtctcgcagcctcttc 419
            |||||||||||||||||| |||||
Sbjct: 5423 tccatgtcgtctcgcagcatcttc 5400
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 361     tgcagaacgccttctcgccc 380
               ||||||||||||||||||||
Sbjct: 1118562 tgcagaacgccttctcgccc 1118581
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>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 442    aagcagcgccatcagctggc 461
              ||||||||||||||||||||
Sbjct: 124590 aagcagcgccatcagctggc 124571
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>emb|BX571859.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
             1/17
          Length = 349483

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   acaccggctaaatcaaaacc 123
             ||||||||||||||||||||
Sbjct: 83093 acaccggctaaatcaaaacc 83074
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>gb|AC093497.2| Drosophila melanogaster 3L BAC RP98-1H12 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 170071

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     aagggaatacccaatgccca 72
              ||||||||||||||||||||
Sbjct: 132687 aagggaatacccaatgccca 132706
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>gb|AC091209.3| Drosophila melanogaster 3L BAC RP98-3G6 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 194979

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    aagggaatacccaatgccca 72
             ||||||||||||||||||||
Sbjct: 45220 aagggaatacccaatgccca 45239
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>emb|CR354426.9| Zebrafish DNA sequence from clone DKEY-48G21 in linkage group 1,
             complete sequence
          Length = 196432

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   gaaccagaagcagcgccatc 454
             ||||||||||||||||||||
Sbjct: 29238 gaaccagaagcagcgccatc 29257
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>gb|AF169237.1|AF169237 Rattus norvegicus truncated estrogen receptor protein 1 gene, exon 1
            and 5' flanking sequence
          Length = 2541

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 701  caagctcaagaaatggcctg 720
            ||||||||||||||||||||
Sbjct: 2020 caagctcaagaaatggcctg 2001
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>gb|AC018499.3| Homo sapiens chromosome 3 clone RP11-267L16 map 3p, complete sequence
          Length = 198444

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  cctaccaagttccaaaccaa 207
            ||||||||||||||||||||
Sbjct: 1341 cctaccaagttccaaaccaa 1322
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>gb|AC018818.5|AC018818 Homo sapiens chromosome 3 clone RP11-266E23 map 3p, complete sequence
          Length = 156335

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    cctaccaagttccaaaccaa 207
              ||||||||||||||||||||
Sbjct: 148246 cctaccaagttccaaaccaa 148227
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 314     cacctcatcgatctcctcctcgac 337
               ||||||||||||||||| ||||||
Sbjct: 4127229 cacctcatcgatctcctgctcgac 4127206
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>dbj|AK099936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119L03, full
           insert sequence
          Length = 1113

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 359 gctgcagaacgccttctcgcccaggtacatgaaggt 394
           ||||||||||||| | ||||||  ||||||||||||
Sbjct: 664 gctgcagaacgccgtgtcgcccttgtacatgaaggt 629
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 316     cctcatcgatctcctcctcg 335
               ||||||||||||||||||||
Sbjct: 2951280 cctcatcgatctcctcctcg 2951299
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>gb|AE003532.3| Drosophila melanogaster chromosome 3L, section 53 of 83 of the complete
              sequence
          Length = 295875

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     aagggaatacccaatgccca 72
              ||||||||||||||||||||
Sbjct: 105773 aagggaatacccaatgccca 105792
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>gb|AC132115.2| Mus musculus BAC clone RP24-146A13 from 1, complete sequence
          Length = 192659

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 596    gcaggtgtactcttcatctt 615
              ||||||||||||||||||||
Sbjct: 126890 gcaggtgtactcttcatctt 126871
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>gb|M84006.1|HALHSP70 Halobacterium marismortui heat shock protein 70 (HSP70) gene,
            complete cds
          Length = 2315

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 316  cctcatcgatctcctcctcg 335
            ||||||||||||||||||||
Sbjct: 1597 cctcatcgatctcctcctcg 1578
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>emb|AL591495.12| Mouse DNA sequence from clone RP23-61O3 on chromosome 2, complete
             sequence
          Length = 239758

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 414   ctcttcctgcagaaggagca 433
             ||||||||||||||||||||
Sbjct: 96342 ctcttcctgcagaaggagca 96361
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>gb|AC018502.6| Homo sapiens chromosome 3 clone RP11-327H17 map 3p, complete sequence
          Length = 198459

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  cctaccaagttccaaaccaa 207
            ||||||||||||||||||||
Sbjct: 1345 cctaccaagttccaaaccaa 1326
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>gb|AC018495.5| Homo sapiens chromosome 3 clone RP11-193K15 map 3p, complete sequence
          Length = 173592

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   cctaccaagttccaaaccaa 207
             ||||||||||||||||||||
Sbjct: 21867 cctaccaagttccaaaccaa 21886


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,793,082
Number of Sequences: 3902068
Number of extensions: 5793082
Number of successful extensions: 114580
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114120
Number of HSP's gapped (non-prelim): 460
length of query: 725
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 702
effective length of database: 17,143,297,704
effective search space: 12034594988208
effective search space used: 12034594988208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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