>ADO1_ARATH (Q94BT6) Adagio protein 1 (Protein ZEITLUPE) (LOV kelch protein 1)|
           (Flavin-binding kelch repeat F-box protein 1-like
           protein 2) (FKF1-like protein 2) (F-box only protein 2b)
           (FBX2b) (Clock-associated PAS protein ZTL)
          Length = 609

 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 29/38 (76%), Positives = 34/38 (89%)
 Frame = -1

Query: 671 WGHSTCVMEGSKAIVLGGQTGEEWTLTEIHELSLASSL 558
           WGH TCV+ G++AIVLGGQTGEEW L+E+HELSLAS L
Sbjct: 571 WGHGTCVVGGTRAIVLGGQTGEEWMLSELHELSLASYL 608

>ADO3_ARATH (Q9C9W9) Adagio protein 3 (Flavin-binding kelch repeat F-box|
           protein 1) (F-box only protein 2a) (FBX2a)
          Length = 619

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 25/36 (69%), Positives = 30/36 (83%)
 Frame = -1

Query: 671 WGHSTCVMEGSKAIVLGGQTGEEWTLTEIHELSLAS 564
           WGHSTCV+ G++ +VLGG TGEEW L E+HEL LAS
Sbjct: 578 WGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLAS 613

>ADO2_ARATH (Q8W420) Adagio protein 2 (LOV kelch protein 2) (Flavin-binding|
           kelch repeat F-box protein 1-like protein 1) (FKF1-like
           protein 1) (F-box only protein 2c) (FBX2c)
          Length = 611

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 25/37 (67%), Positives = 31/37 (83%)
 Frame = -1

Query: 671 WGHSTCVMEGSKAIVLGGQTGEEWTLTEIHELSLASS 561
           WGH+TCV+ G++ +VLGGQTGEEW L E HEL LA+S
Sbjct: 570 WGHTTCVVGGTRLVVLGGQTGEEWMLNEAHELLLATS 606

>TKT7_CRAPL (Q42677) Transketolase 7 (EC 2.2.1.1) (TK)|
          Length = 676

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +3

Query: 105 HGAARGEHTRHTQRKSLT*PYLAVEISEQLQHHRQRHASQGVGSDGTLQASPVPF 269
           HG A G       RK+L  PY    + + ++ H  RH ++G   +    A    F
Sbjct: 273 HGNALGPKEAEATRKNLGWPYEPFHVPDDVKKHWSRHIAEGAALESAWNAKFAEF 327

>TKTC_SPIOL (O20250) Transketolase, chloroplast precursor (EC 2.2.1.1) (TK)|
          Length = 741

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 105 HGAARGEHTRHTQRKSLT*PYLAVEISEQLQHHRQRHASQG 227
           HG+A G       R++L  PY    + E+++ H  RH  +G
Sbjct: 340 HGSALGSKEVEATRQNLGWPYEPFHVPEEVKKHWSRHTPEG 380

>DAPA1_BACHD (Q9KC32) Dihydrodipicolinate synthase 1 (EC 4.2.1.52) (DHDPS 1)|
          Length = 295

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 653 VMEGSKAIVLGGQTGEEWTLTEIHELSLASSLV 555
           +  GS A+V+GG TGE  TLT   +++L  ++V
Sbjct: 33  IANGSDALVVGGTTGESPTLTTDEKMALFHTVV 65

>RAF1_HUMAN (P04049) RAF proto-oncogene serine/threonine-protein kinase (EC|
           2.7.11.1) (Raf-1) (C-RAF) (cRaf)
          Length = 648

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
 Frame = -1

Query: 323 PSMCVVLVRCFQHSDKRNKRDWRCLECPIRSNTLRCVXXXXXXXXX*NFDRQIWLC*AFA 144
           P  C V     +H  K+ + DW      +    L+            NF R+ +L  AF 
Sbjct: 93  PECCAVFRLLHEHKGKKARLDWNTDAASLIGEELQVDFLDHVPLTTHNFARKTFLKLAFC 152

Query: 143 -LCMPCMFSAGRAVT-----HSHCS 87
            +C   + +  R  T     H HCS
Sbjct: 153 DICQKFLLNGFRCQTCGYKFHEHCS 177

>GLGB_CRYNE (Q5KP87) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme)
          Length = 682

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +2

Query: 77  RQQTNNVSESRRGPRRTYKAYTTQKLNITISGGRNFRAVTTSSAEARIAGCWIGWD---T 247
           ++Q   + E   G     K Y +    I  +GG  +R   +++ EAR+ G +  W     
Sbjct: 34  QKQRTIIEEHEGGLAEFSKGYKSMGFQIDKNGGVRYREWASNATEARLIGEFNNWSHTAN 93

Query: 248 PSIASPF 268
           P   SPF
Sbjct: 94  PMTKSPF 100

>GGPPS_HEVBR (Q94ID7) Geranylgeranyl pyrophosphate synthetase, chloroplast|
           precursor (GGPP synthetase) [Includes:
           Dimethylallyltranstransferase (EC 2.5.1.1);
           Geranyltranstransferase (EC 2.5.1.10);
           Farnesyltranstransferase (EC 2.5.1.29)]
          Length = 370

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +1

Query: 379 GECIPTSYRLNEATLRRCESSQLSST*D*PAMRTSQFAYQFRLHSFEEPVSLLETVRSQT 558
           G  + TSY LN+AT  R +S   S     P       A  F     E P+S +  + ++ 
Sbjct: 7   GSWVHTSYVLNQATRSRSKSKSFSL----PFNPLKSLAISFAYRKSERPISSVSAIITKE 62

Query: 559 NELARE 576
            E  +E
Sbjct: 63  EETLQE 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,323,563
Number of Sequences: 219361
Number of extensions: 1963583
Number of successful extensions: 4727
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4727
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)