ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16d16 |
|---|---|
| Clone Library Name | barley_pub |
>FACE2_DROME (Q9U1H8) CAAX prenyl protease 2 (EC 3.4.22.-) (Prenyl| protein-specific endoprotease 2) (Farnesylated proteins-converting enzyme 2) (FACE-2) (Protein severas) Length = 302 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 19/96 (19%) Frame = -1 Query: 549 VLAPILEETVFRGFLMVSLTKWFPTPVCVILSAAVFAFAHLTP----------------- 421 V+AP+ EE VFR +M + + F V V ++ F AHL Sbjct: 154 VIAPLSEEFVFRACMMPLILQSFSPLVAVFITPLFFGVAHLHHIAERLSLGVELSTALLI 213 Query: 420 --DQFPQLFVLGVALGFTYAQTRNLLAPITIHAFWN 319 QF + G F +A+T +++API +HAF N Sbjct: 214 GLFQFIYTTLFGFYSAFLFARTGHVMAPILVHAFCN 249
>FACE2_HUMAN (Q9Y256) CAAX prenyl protease 2 (EC 3.4.22.-) (Prenyl| protein-specific endoprotease 2) (Farnesylated proteins-converting enzyme 2) (FACE-2) (hRCE1) Length = 329 Score = 33.1 bits (74), Expect = 0.69 Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 20/97 (20%) Frame = -1 Query: 549 VLAPILEETVFRGFLMVSLTKWFPTPVCVILSAAVFAFAHL------------------- 427 V+AP+ EE VFR ++ L V F AH Sbjct: 169 VIAPLTEELVFRACMLPMLAPCMGLGPAVFTCPLFFGVAHFHHIIEQLRFRQSSVGNIFL 228 Query: 426 -TPDQFPQLFVLGVALGFTYAQTRNLLAPITIHAFWN 319 QF V G F + +T +L+ P+ H+F N Sbjct: 229 SAAFQFSYTAVFGAYTAFLFIRTGHLIGPVLCHSFCN 265
>CYSK_BUCAI (P57171) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) Length = 315 Score = 32.7 bits (73), Expect = 0.90 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = +2 Query: 443 NTAALRITQTGVGNHLVKDTIRNPRNTVSSRIGA 544 NT +R+ + G GN LVK RNP +V RIGA Sbjct: 14 NTPLVRLNRIGNGNILVKIESRNPSFSVKCRIGA 47
>YAIF_LACLA (Q9CJB5) Hypothetical UPF0177 protein yaiF| Length = 218 Score = 32.7 bits (73), Expect = 0.90 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 4/96 (4%) Frame = -1 Query: 591 SSTLSTAYLVGITGVLAPILEETVFRG--FLMVSLTKWFPTPVCVILSAAVFAFAH--LT 424 SS L V ++ +LAPILEE+++R + + +W LS F++ H + Sbjct: 125 SSLLFPGQFVAVS-ILAPILEESIYRACFYKLFGYYRW-----TFFLSCFFFSYVHSGFS 178 Query: 423 PDQFPQLFVLGVALGFTYAQTRNLLAPITIHAFWNS 316 D L L +AL + Y + + L I +HA +N+ Sbjct: 179 WDILGYL-PLSIALTYVYHRRQVLTDSILLHALFNT 213
>GRN_CAVPO (P28797) Granulins precursor (Proepithelin) (PEPI) [Contains:| Acrogranin; Granulin-1; Granulin-2; Granulin-3; Granulin-4; Granulin-5; Granulin-6; Granulin-7] (Fragment) Length = 591 Score = 32.7 bits (73), Expect = 0.90 Identities = 30/124 (24%), Positives = 44/124 (35%), Gaps = 4/124 (3%) Frame = -3 Query: 613 PFTATNWLINSQHCLFGGDYWSSSTNSGGDCVPRISNGVLD*VV----SYSSLRDSQCCC 446 PF+ + HC G + S+ GG C+ R +L V + S CC Sbjct: 71 PFSQAMACGDGHHCCPYGFHCSTD---GGTCIQRPDIHLLGAVQCPGGEFECPDSSTCCH 127 Query: 445 ICLRSFDT*SIPTTVCIRCCTRIYICXXXXXXXXXXNTCILELGSYTAANLSSVARVRYQ 266 + S+ +P C C R++ C C+ LGS+ R Y Sbjct: 128 MLDGSWGCCPMPQASC--CEDRVHCCPHGASCDLVHIRCVTALGSHPLTTKLPAQRTNYT 185 Query: 265 GAIG 254 GA G Sbjct: 186 GAEG 189
>YPRA_ECOLI (P13974) Hypothetical 24.3 kDa protein (URF 1)| Length = 217 Score = 32.7 bits (73), Expect = 0.90 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 9/82 (10%) Frame = -1 Query: 549 VLAPILEETVFRGFLM------VSLTKWFPTPVCVILSAAVFAFAHLTPDQ---FPQLFV 397 +LAP+ EET+FRG ++ T W + ++++ +F AH +LF+ Sbjct: 129 ILAPLNEETLFRGIMLNVFRSRYCWTMW----LGALITSLLFVAAHSQYQNLLTLAELFL 184 Query: 396 LGVALGFTYAQTRNLLAPITIH 331 +G+ ++ LL P+ +H Sbjct: 185 VGLITSVARIRSGGLLLPVLLH 206
>FACE2_MOUSE (P57791) CAAX prenyl protease 2 (EC 3.4.22.-) (Prenyl| protein-specific endoprotease 2) (Farnesylated proteins-converting enzyme 2) (FACE-2) Length = 329 Score = 32.3 bits (72), Expect = 1.2 Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 20/97 (20%) Frame = -1 Query: 549 VLAPILEETVFRGFLMVSLTKWFPTPVCVILSAAVFAFAHL------------------- 427 V+AP+ EE VFR ++ L V F AH Sbjct: 169 VIAPLTEELVFRACMLPMLAPCTGLGPAVFTCPLFFGVAHFHHIIEQLRFRQSSVGSIFV 228 Query: 426 -TPDQFPQLFVLGVALGFTYAQTRNLLAPITIHAFWN 319 QF V G F + +T +L+ P+ H+F N Sbjct: 229 SAAFQFSYTAVFGAYTAFLFIRTGHLIGPVLCHSFCN 265
>CYSK_BUCAP (Q8KA48) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) Length = 322 Score = 30.8 bits (68), Expect = 3.4 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = +2 Query: 443 NTAALRITQTGVGNHLVKDTIRNPRNTVSSRIGA 544 NT +R+ G GN L K RNP +V RIGA Sbjct: 14 NTPLVRLNNIGNGNILAKIESRNPSFSVKCRIGA 47
>NORM_PASMU (Q9CMZ9) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 464 Score = 30.0 bits (66), Expect = 5.8 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 4/107 (3%) Frame = -1 Query: 609 LLPLIGSSTLSTAYLVGITGVLAPILEETVFRG-FLMVSLTKWFPTPVCVILSAAVFAFA 433 LL + ++TL+ + V I + + G L+++ F V V+ A+ + Sbjct: 328 LLIAVITATLTVIFRVEIAEIFVKDRDVIAMAGTLLLIAALYQFSDTVQVVAGGALRGYK 387 Query: 432 HLTPDQFPQLF---VLGVALGFTYAQTRNLLAPITIHAFWNSGVILL 301 + LF V+G+ +G+T A+T L+ + FW V+ L Sbjct: 388 DTKAILYITLFCYWVVGMPMGYTLARTDLLMPALGAEGFWIGFVVSL 434
>S29A2_RAT (O54699) Equilibrative nucleoside transporter 2 (Equilibrative| nitrobenzylmercaptopurine riboside-insensitive nucleoside transporter) (Equilibrative NBMPR-insensitive nucleoside transporter) (Nucleoside transporter, ei-type) (Solute carrier fam Length = 456 Score = 29.6 bits (65), Expect = 7.6 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Frame = -1 Query: 588 STLSTAYLVGITGVLAPI-LEETVFRGFLMVSLTKWFPTPVCVILSAAVFAFAHLTPDQF 412 S L+ L +T L + L +F M S+ WF C +L ++F P + Sbjct: 101 SLLAILLLFALTAALVKVDLSPGLFFSITMASV--WFINSFCAVLQGSLFGQLGTMPSTY 158 Query: 411 PQLFVLGVALGFTYA 367 LF+ G L +A Sbjct: 159 STLFLSGQGLAGIFA 173
>YVGT_BACSU (O32216) Hypothetical UPF0126 protein yvgT| Length = 202 Score = 29.3 bits (64), Expect = 10.0 Identities = 11/41 (26%), Positives = 19/41 (46%) Frame = -1 Query: 405 LFVLGVALGFTYAQTRNLLAPITIHAFWNSGVILLLTFLQL 283 +++LG+ F RNLL + + A W G + L + Sbjct: 32 VYILGIVTAFGGGAIRNLLIGVPVSALWEQGAYFQIALLSI 72
>YBDI_LACLA (Q9CJ67) Hypothetical UPF0177 protein ybdI| Length = 181 Score = 29.3 bits (64), Expect = 10.0 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 2/97 (2%) Frame = -1 Query: 588 STLSTAYLVGITGVLAPILEETVFRGFLMVSLT-KWFPTPVCVILSAAVFAFAHLTPD-Q 415 S L T ++ + V+API EE +FR + + KW + ILS +F H Sbjct: 84 SFLPTWFVYILMVVIAPIYEELMFREYFYRFFSHKW----LAYILSILLFTLIHTRLTWS 139 Query: 414 FPQLFVLGVALGFTYAQTRNLLAPITIHAFWNSGVIL 304 F + + V + T+ + + + I +H +N V++ Sbjct: 140 FFEYLPMSVIVTSTFHRYKRVSDSIIVHGGYNLMVLI 176 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,032,122 Number of Sequences: 219361 Number of extensions: 1822439 Number of successful extensions: 4550 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4456 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4549 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
