ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15o16 |
|---|---|
| Clone Library Name | barley_pub |
>EDN3_MOUSE (P48299) Endothelin-3 precursor (ET-3) (Preproendothelin-3) (PPET3)| Length = 214 Score = 32.3 bits (72), Expect = 0.52 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -2 Query: 224 LFNCQRRGDAGRQSPEQGPAQEGASQICSACWARMGLTVVTYT 96 L C + GD+GR S QGP + G+ + C A G +V+ T Sbjct: 19 LVPCPQSGDSGRASVSQGPPEAGSERGCEETVAGPGERIVSPT 61
>COBL7_ARATH (Q8GZ17) COBRA-like protein 7 precursor| Length = 661 Score = 29.6 bits (65), Expect = 3.4 Identities = 20/44 (45%), Positives = 25/44 (56%) Frame = +3 Query: 234 RWLLCGVLIVSYVRPLQQSISSLNTSPYCSNPSPSSKAPICNAV 365 R LL +LIVS PL S S NT+ +PSP S + +CN V Sbjct: 10 RLLLLSLLIVSI--PLTSSQSDANTTN--PSPSPPSDSDLCNGV 49
>MOT6_HUMAN (O15375) Monocarboxylate transporter 6 (MCT 6) (MCT 5)| Length = 505 Score = 29.3 bits (64), Expect = 4.4 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Frame = +3 Query: 243 LCGVLIVSYVRPLQQSISSLNTSPYCSNPSPSSKAPICNAVCG------LSFFFFFLKNG 404 +CG +I RP+ S++ + C P P + A C A CG L+F G Sbjct: 184 ICGAII----RPVATSVAP--ETKECPPPPPETPALGCLAACGRTIQRHLAFDILRHNTG 237 Query: 405 YCLILL 422 YC+ +L Sbjct: 238 YCVYIL 243
>IVBI_TROCA (Q6ITB0) Carinatin precursor| Length = 83 Score = 28.5 bits (62), Expect = 7.6 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Frame = +1 Query: 118 PILAQQAEQICEAPSWAGPCSGL--CLPASPRR*QLNKRQLGGCYVAFSLSRTYARC 282 P+ ++ CE P GPC G+ +P + Q + GGCY + +T C Sbjct: 21 PVSSKDRPDFCELPDDRGPCRGIFHAFYYNPDQRQCLEFIYGGCYGNANNFKTIDEC 77
>IVBI_PSEPO (Q6ITB1) Blackelin precursor| Length = 83 Score = 28.5 bits (62), Expect = 7.6 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Frame = +1 Query: 118 PILAQQAEQICEAPSWAGPCSGL--CLPASPRR*QLNKRQLGGCYVAFSLSRTYARC 282 P+ ++ CE P GPC G+ +P + Q + GGCY + +T C Sbjct: 21 PVSSKDRPDFCELPDDRGPCRGIFHAFYYNPDQRQCLEFIYGGCYGNANNFKTIDEC 77
>QCRB_STRLI (Q9ZFB6) Ubiquinol-cytochrome c reductase cytochrome b subunit| Length = 549 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Frame = +2 Query: 113 LGPFWPSKPSRFARLPPGPV-LALGF 187 + P WPS P+ R PP P L LGF Sbjct: 289 INPIWPSGPTGPTRSPPAPSRLVLGF 314
>PSIP1_FELCA (Q66T72) PC4 and SFRS1-interacting protein (Lens epithelium-derived| growth factor) (Transcription coactivator p75) (LEDGF/p75) Length = 530 Score = 28.1 bits (61), Expect = 9.9 Identities = 10/29 (34%), Positives = 19/29 (65%) Frame = -3 Query: 223 CLTVSDEATQEDKAQSKDRPRREPRKSAR 137 C + SD T+EDK++ K + ++P+K + Sbjct: 204 CPSESDMVTEEDKSKKKGQEEKQPKKQLK 232
>VMSA_HBVW9 (P17101) Major surface antigen precursor| Length = 399 Score = 28.1 bits (61), Expect = 9.9 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 19/81 (23%) Frame = +3 Query: 240 LLCGVLIVSYVRPLQQSISS-------LNTSPYC---------SNPSPSSKAPICNA--- 362 L G +++ + + QS+ S L SP C SN SP+S PIC Sbjct: 188 LQAGFFLLTRILTIPQSLDSWWTSLNFLGGSPVCLGQNSRSPTSNHSPTSCPPICPGYRW 247 Query: 363 VCGLSFFFFFLKNGYCLILLL 425 +C F F CLI LL Sbjct: 248 MCLRRFIIFLFILLLCLIFLL 268
>VMSA_HBVW2 (P03141) Major surface antigen precursor| Length = 399 Score = 28.1 bits (61), Expect = 9.9 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 19/81 (23%) Frame = +3 Query: 240 LLCGVLIVSYVRPLQQSISS-------LNTSPYC---------SNPSPSSKAPICNA--- 362 L G +++ + + QS+ S L SP C SN SP+S PIC Sbjct: 188 LQAGFFLLTRILTIPQSLDSWWTSLNFLGGSPVCLGQNSQSPTSNHSPTSCPPICPGYRW 247 Query: 363 VCGLSFFFFFLKNGYCLILLL 425 +C F F CLI LL Sbjct: 248 MCLRRFIIFLFILLLCLIFLL 268
>VMSA_HBVAW (P03142) Major surface antigen precursor| Length = 388 Score = 28.1 bits (61), Expect = 9.9 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 19/81 (23%) Frame = +3 Query: 240 LLCGVLIVSYVRPLQQSISS-------LNTSPYC---------SNPSPSSKAPICNA--- 362 L G +++ + + QS+ S L SP C SN SP+S PIC Sbjct: 177 LQAGFFLLTRILTIPQSLDSWWTSLNFLGGSPVCLGQNSQSPTSNHSPTSCPPICPGYRW 236 Query: 363 VCGLSFFFFFLKNGYCLILLL 425 +C F F CLI LL Sbjct: 237 MCLRRFIIFLFILLLCLIFLL 257
>ERG7_MOUSE (Q8BLN5) Lanosterol synthase (EC 5.4.99.7)| (Oxidosqualene--lanosterol cyclase) (2,3-epoxysqualene--lanosterol cyclase) (OSC) Length = 733 Score = 28.1 bits (61), Expect = 9.9 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 5/50 (10%) Frame = -2 Query: 233 SCRLFNCQRRGDAG-----RQSPEQGPAQEGASQICSACWARMGLTVVTY 99 +C Q+ D G ++ Q SQ+ S CWA MGL V + Sbjct: 616 ACNFLLSQQMADGGWGEDFESCEQRRYVQSARSQVHSTCWALMGLMAVRH 665
>VMSA_HBV (P31873) Major surface antigen| Length = 226 Score = 28.1 bits (61), Expect = 9.9 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 19/81 (23%) Frame = +3 Query: 240 LLCGVLIVSYVRPLQQSISS-------LNTSPYC---------SNPSPSSKAPICNA--- 362 L G +++ + + QS+ S L SP C SN SP+S PIC Sbjct: 15 LQAGFFLLTRILTIPQSLDSWWTSLNFLGGSPVCLGQNSQSPTSNHSPTSCPPICPGYRW 74 Query: 363 VCGLSFFFFFLKNGYCLILLL 425 +C F F CLI LL Sbjct: 75 MCLRRFIIFLFILLLCLIFLL 95
>HPT_RAT (P06866) Haptoglobin precursor [Contains: Haptoglobin alpha chain;| Haptoglobin beta chain] Length = 347 Score = 28.1 bits (61), Expect = 9.9 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +3 Query: 291 ISSLNTSPYCSNPSPSSKAPICNAVCG 371 I +LN+ NP+ K P C AVCG Sbjct: 65 IYTLNSEKQWVNPAAGDKLPKCEAVCG 91 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,221,732 Number of Sequences: 219361 Number of extensions: 929431 Number of successful extensions: 2779 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2703 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2779 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
