ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15o14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA 454 e-125
2emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene 440 e-121
3dbj|AK121585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 3e-28
4dbj|AK119679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 3e-28
5dbj|AK099446.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 3e-28
6gb|AF012897.1|AF012897 Oryza sativa HvB12D homolog mRNA, complet... 133 3e-28
7gb|BT016635.1| Zea mays clone Contig468 mRNA sequence 127 2e-26
8gb|AF466286.1| Oryza sativa putative G-box binding protein mRNA,... 125 7e-26
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 125 7e-26
10dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 125 7e-26
11gb|AY104072.1| Zea mays PCO110104 mRNA sequence 86 6e-14
12gb|DQ226813.1| Boechera divaricarpa isolate SLW-B-F11 mRNA sequence 50 0.003
13gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome... 46 0.050
14gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, c... 44 0.20
15gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, com... 44 0.20
16ref|NM_114683.3| Arabidopsis thaliana unknown protein AT3G48140 ... 42 0.78
17gb|AC006396.1| Homo sapiens PAC clone RP4-733H1 from 7, complete... 42 0.78
18emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, B... 42 0.78
19gb|AY081326.1| Arabidopsis thaliana B12D-like protein (At3g48140... 42 0.78
20gb|AC152070.4| Pan troglodytes BAC clone RP43-135N21 from chromo... 42 0.78
21emb|BX826078.1|CNS0A53J Arabidopsis thaliana Full-length cDNA Co... 42 0.78
22emb|BX841563.1|CNS09YFD Arabidopsis thaliana Full-length cDNA Co... 42 0.78
23gb|BT001183.1| Arabidopsis thaliana B12D-like protein (At3g48140... 42 0.78
24emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chro... 42 0.78
25gb|AF099921.1| Caenorhabditis elegans cosmid M01E10, complete se... 40 3.1
26ref|XM_676154.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 3.1
27gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, co... 40 3.1
28emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 40 3.1
29emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 3.1
30gb|AC009238.4| Homo sapiens BAC clone RP11-468G5 from 2, complet... 40 3.1
31gb|AF111796.1|AF111796 Bordetella bronchiseptica strain GP1 adhe... 40 3.1 
>emb|X76604.1|HVB12D Hordeum vulgare (cv. Bomi) B12D mRNA
          Length = 502

 Score =  454 bits (229), Expect = e-125
 Identities = 239/241 (99%), Gaps = 1/241 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattactgaatgcttgaaataggtttgcacttgacc-caacagtttctaatagcgagtc 59
           ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 403 acattactgaatgcttgaaataggtttgcacttgaccacaacagttgctaatagcgagtc 344

                                                                       
Query: 60  acagacagacagtctaaagtgcttcatttcgggctggtgaagaacttgttgattcctggc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 acagacagacagtctaaagtgcttcatttcgggctggtgaagaacttgttgattcctggc 284

                                                                       
Query: 120 atgatctcgggggtcttgtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 atgatctcgggggtcttgtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctg 224

                                                                       
Query: 180 ccctcctcatggttctcaagcactcctgctgccctccccatcttgctgaccctgacttct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ccctcctcatggttctcaagcactcctgctgccctccccatcttgctgaccctgacttct 164

            
Query: 240 g 240
           |
Sbjct: 163 g 163
to top
>emb|Y09805.1|HVB12DG1 H.vulgare B12Dg1 gene
          Length = 1931

 Score =  440 bits (222), Expect = e-121
 Identities = 232/234 (99%), Gaps = 1/234 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    acattactgaatgcttgaaataggtttgcacttgacc-caacagtttctaatagcgagtc 59
            ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 1545 acattactgaatgcttgaaataggtttgcacttgaccacaacagttgctaatagcgagtc 1486

                                                                        
Query: 60   acagacagacagtctaaagtgcttcatttcgggctggtgaagaacttgttgattcctggc 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1485 acagacagacagtctaaagtgcttcatttcgggctggtgaagaacttgttgattcctggc 1426

                                                                        
Query: 120  atgatctcgggggtcttgtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctg 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1425 atgatctcgggggtcttgtcctgcacgtaggctctgaggccgtgctcggcgtagcgcctg 1366

                                                                  
Query: 180  ccctcctcatggttctcaagcactcctgctgccctccccatcttgctgaccctg 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1365 ccctcctcatggttctcaagcactcctgctgccctccccatcttgctgaccctg 1312
to top
>dbj|AK121585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037I06, full
           insert sequence
          Length = 576

 Score =  133 bits (67), Expect = 3e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                       
Query: 96  gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 155
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 328 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 269

                                                                       
Query: 156 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 215
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 268 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 209

                                  
Query: 216 cccatcttgctgaccctgacttc 238
           || | |||| | |||||||||||
Sbjct: 208 cctaccttgttaaccctgacttc 186
to top
>dbj|AK119679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-H09, full
           insert sequence
          Length = 552

 Score =  133 bits (67), Expect = 3e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                       
Query: 96  gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 155
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 325 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 266

                                                                       
Query: 156 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 215
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 265 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 206

                                  
Query: 216 cccatcttgctgaccctgacttc 238
           || | |||| | |||||||||||
Sbjct: 205 cctaccttgttaaccctgacttc 183
to top
>dbj|AK099446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021L07, full
           insert sequence
          Length = 518

 Score =  133 bits (67), Expect = 3e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                       
Query: 96  gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 155
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 322 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 263

                                                                       
Query: 156 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 215
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 262 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 203

                                  
Query: 216 cccatcttgctgaccctgacttc 238
           || | |||| | |||||||||||
Sbjct: 202 cctaccttgttaaccctgacttc 180
to top
>gb|AF012897.1|AF012897 Oryza sativa HvB12D homolog mRNA, complete cds
          Length = 545

 Score =  133 bits (67), Expect = 3e-28
 Identities = 124/143 (86%)
 Strand = Plus / Minus

                                                                       
Query: 96  gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 155
           |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 294 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 235

                                                                       
Query: 156 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 215
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 234 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 175

                                  
Query: 216 cccatcttgctgaccctgacttc 238
           || | |||| | |||||||||||
Sbjct: 174 cctaccttgttaaccctgacttc 152
to top
>gb|BT016635.1| Zea mays clone Contig468 mRNA sequence
          Length = 792

 Score =  127 bits (64), Expect = 2e-26
 Identities = 121/140 (86%)
 Strand = Plus / Minus

                                                                       
Query: 99  aagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctgagg 158
           ||||||||||||||  ||||||||||||||||||||||||| |||||  ||  |||||||
Sbjct: 483 aagaacttgttgatagctggcatgatctcgggggtcttgtcgtgcacaaagcttctgagg 424

                                                                       
Query: 159 ccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctcccc 218
           || |||  |||||| ||||| ||||||||||||||||||||||| || ||||||||||| 
Sbjct: 423 ccatgcatggcgtaacgcctcccctcctcatggttctcaagcacgccggctgccctccct 364

                               
Query: 219 atcttgctgaccctgacttc 238
             |||| | |||||||||||
Sbjct: 363 gccttgtttaccctgacttc 344
to top
>gb|AF466286.1| Oryza sativa putative G-box binding protein mRNA, complete cds
          Length = 510

 Score =  125 bits (63), Expect = 7e-26
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                       
Query: 96  gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 155
           ||||| |||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 265 gtgaaaaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 206

                                                                       
Query: 156 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 215
           || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 205 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 146

                                  
Query: 216 cccatcttgctgaccctgacttc 238
           || | |||| | |||||||||||
Sbjct: 145 cctaccttgttaaccctgacttc 123
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  125 bits (63), Expect = 7e-26
 Identities = 120/139 (86%)
 Strand = Plus / Plus

                                                                           
Query: 96      gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 155
               |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 7602745 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 7602804

                                                                           
Query: 156     aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 215
               || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 7602805 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 7602864

                                  
Query: 216     cccatcttgctgaccctga 234
               || | |||| | |||||||
Sbjct: 7602865 cctaccttgttaaccctga 7602883
to top
>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1136_C11
          Length = 124827

 Score =  125 bits (63), Expect = 7e-26
 Identities = 120/139 (86%)
 Strand = Plus / Plus

                                                                         
Query: 96    gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 155
             |||||||||||||||||  ||||||||||||| |||||||||||  |||| |||  ||| 
Sbjct: 26000 gtgaagaacttgttgatagctggcatgatctcaggggtcttgtcgcgcacatagtttctt 26059

                                                                         
Query: 156   aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 215
             || || ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 26060 agcccatgctctgcgtagcgccttccctcctcatggttctcgagcactccagctgccctc 26119

                                
Query: 216   cccatcttgctgaccctga 234
             || | |||| | |||||||
Sbjct: 26120 cctaccttgttaaccctga 26138
to top
>gb|AY104072.1| Zea mays PCO110104 mRNA sequence
          Length = 727

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 118/143 (82%)
 Strand = Plus / Minus

                                                                       
Query: 96  gtgaagaacttgttgattcctggcatgatctcgggggtcttgtcctgcacgtaggctctg 155
           |||||||||||||| | | | ||||||||||| || |||||||| |||||  ||  ||| 
Sbjct: 359 gtgaagaacttgttaactgcaggcatgatctcaggagtcttgtcgtgcacaaagcttctt 300

                                                                       
Query: 156 aggccgtgctcggcgtagcgcctgccctcctcatggttctcaagcactcctgctgccctc 215
           ||||| |||  |||||| || || ||||||||||||||||||||||| || |||||||||
Sbjct: 299 aggccatgcatggcgtaacgtctcccctcctcatggttctcaagcacaccagctgccctc 240

                                  
Query: 216 cccatcttgctgaccctgacttc 238
           ||   |||| | |||||||||||
Sbjct: 239 cctgccttgtttaccctgacttc 217
to top
>gb|DQ226813.1| Boechera divaricarpa isolate SLW-B-F11 mRNA sequence
          Length = 567

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 96  gtgaagaacttgttgattcctggcatgat 124
           |||||||||||||||||||| ||||||||
Sbjct: 310 gtgaagaacttgttgattccaggcatgat 282
to top
>gb|AC162910.2| Mus musculus BAC clone RP24-322O3 from chromosome 12, complete sequence
          Length = 183707

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 102   aacttgttgattcctggcatgat 124
             |||||||||||||||||||||||
Sbjct: 15085 aacttgttgattcctggcatgat 15107
to top
>gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, complete sequence
          Length = 168677

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 177   ctgccctcctcatggttctcaagcac 202
             |||||||||||||||||| |||||||
Sbjct: 39836 ctgccctcctcatggttcacaagcac 39861
to top
>gb|AC117805.8| Mus musculus chromosome 19, clone RP24-565L9, complete sequence
          Length = 156701

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 177   ctgccctcctcatggttctcaagcac 202
             |||||||||||||||||| |||||||
Sbjct: 10630 ctgccctcctcatggttcacaagcac 10605
to top
>ref|NM_114683.3| Arabidopsis thaliana unknown protein AT3G48140 mRNA, complete cds
          Length = 588

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 96  gtgaagaacttgttgattcctggcatgat 124
           |||||||||||||||| ||| ||||||||
Sbjct: 322 gtgaagaacttgttgagtccaggcatgat 294
to top
>gb|AC006396.1| Homo sapiens PAC clone RP4-733H1 from 7, complete sequence
          Length = 81854

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 203   tcctgctgccctccccatctt 223
             |||||||||||||||||||||
Sbjct: 46605 tcctgctgccctccccatctt 46585
to top
>emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, BAC clone T24C20
          Length = 103889

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 96    gtgaagaacttgttgattcctggcatgat 124
             |||||||||||||||| ||| ||||||||
Sbjct: 12996 gtgaagaacttgttgagtccaggcatgat 12968
to top
>gb|AY081326.1| Arabidopsis thaliana B12D-like protein (At3g48140) mRNA, complete
           cds
          Length = 558

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 96  gtgaagaacttgttgattcctggcatgat 124
           |||||||||||||||| ||| ||||||||
Sbjct: 322 gtgaagaacttgttgagtccaggcatgat 294
to top
>gb|AC152070.4| Pan troglodytes BAC clone RP43-135N21 from chromosome 7, complete
            sequence
          Length = 162075

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 203  tcctgctgccctccccatctt 223
            |||||||||||||||||||||
Sbjct: 3856 tcctgctgccctccccatctt 3876
to top
>emb|BX826078.1|CNS0A53J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZE04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 551

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 96  gtgaagaacttgttgattcctggcatgat 124
           |||||||||||||||| ||| ||||||||
Sbjct: 304 gtgaagaacttgttgagtccaggcatgat 276
to top
>emb|BX841563.1|CNS09YFD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH57ZC05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 515

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 96  gtgaagaacttgttgattcctggcatgat 124
           |||||||||||||||| ||| ||||||||
Sbjct: 212 gtgaagaacttgttgagtccaggcatgat 240
to top
>gb|BT001183.1| Arabidopsis thaliana B12D-like protein (At3g48140) mRNA, complete
           cds
          Length = 350

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 96  gtgaagaacttgttgattcctggcatgat 124
           |||||||||||||||| ||| ||||||||
Sbjct: 251 gtgaagaacttgttgagtccaggcatgat 223
to top
>emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chromosome 4, complete
              sequence
          Length = 182774

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 220    tcttgctgaccctgacttctg 240
              |||||||||||||||||||||
Sbjct: 130420 tcttgctgaccctgacttctg 130400
to top
>gb|AF099921.1| Caenorhabditis elegans cosmid M01E10, complete sequence
          Length = 39974

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   agcactcctgctgccctccc 217
             ||||||||||||||||||||
Sbjct: 18360 agcactcctgctgccctccc 18341
to top
>ref|XM_676154.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7977.2), mRNA
          Length = 921

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 192 ttctcaagcactcctgctgc 211
           ||||||||||||||||||||
Sbjct: 917 ttctcaagcactcctgctgc 898
to top
>gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, complete sequence
          Length = 215147

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 44    tttctaatagcgagtcacagacagacag 71
             ||||||| ||||||||||||||| ||||
Sbjct: 18855 tttctaaaagcgagtcacagacacacag 18882
to top
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   gccgtgctcggcgtagcgcc 177
             ||||||||||||||||||||
Sbjct: 58257 gccgtgctcggcgtagcgcc 58276
to top
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   gccgtgctcggcgtagcgcc 177
             ||||||||||||||||||||
Sbjct: 21961 gccgtgctcggcgtagcgcc 21942
to top
>gb|AC009238.4| Homo sapiens BAC clone RP11-468G5 from 2, complete sequence
          Length = 202361

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 204    cctgctgccctccccatcttgctg 227
              |||||||||||||||| |||||||
Sbjct: 117817 cctgctgccctccccaccttgctg 117794
to top
>gb|AF111796.1|AF111796 Bordetella bronchiseptica strain GP1 adhesin (fhaB) and putative
            major fimbrial structural subunit (fimA) genes, complete
            cds
          Length = 12256

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 158  gccgtgctcggcgtagcgcc 177
            ||||||||||||||||||||
Sbjct: 4564 gccgtgctcggcgtagcgcc 4545


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,294,317
Number of Sequences: 3902068
Number of extensions: 2294317
Number of successful extensions: 68653
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68600
Number of HSP's gapped (non-prelim): 51
length of query: 241
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 219
effective length of database: 17,147,199,772
effective search space: 3755236750068
effective search space used: 3755236750068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top