>RPOC_ENTFA (Q82Z41) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1217

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
 Frame = +1

Query: 145  QLTIRGKKKITTYTSFFITEVLIN*TPLLQYSSPYILPSTDPQLEKSIRRLLC--TYLLN 318
            ++TI+GK    TYT  +   + +    ++   +P    S DP+    +R +L    YLL 
Sbjct: 991  EVTIKGKTDTRTYTVPYTARMKVAEGDIIHRGAPLTEGSIDPKQLLQVRDVLSVENYLLR 1050

Query: 319  QVAR-----------RHYDNCIKDLNQERTCEDPG 390
            +V R           +H +  ++ + ++    DPG
Sbjct: 1051 EVQRVYRMQGVEIGDKHIEVMVRQMLRKIRVMDPG 1085

>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2505

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 223  PLLQYSSPYILPSTDPQLEKSIRRLLCTYLLNQVARRHYDNCI 351
            P+  YSS +IL +T+P       R LC Y+LN    R+++ CI
Sbjct: 1217 PMPPYSSMFILSTTNP------LRRLCHYILN---LRYFEMCI 1250

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 223  PLLQYSSPYILPSTDPQLEKSIRRLLCTYLLNQVARRHYDNCI 351
            P+  YSS +IL +T+P       R LC Y+LN    R+++ CI
Sbjct: 1226 PMPPYSSMFILSTTNP------LRRLCHYILN---LRYFEMCI 1259

>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2164

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 223  PLLQYSSPYILPSTDPQLEKSIRRLLCTYLLNQVARRHYDNCI 351
            P+  YSS +IL +T+P       R LC Y+LN    R+++ CI
Sbjct: 1120 PMPPYSSMFILSTTNP------LRRLCHYILN---LRYFEMCI 1153

>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 4)
            (Brain calcium channel I) (BI) (RAT brain class A)
            (RBA-I)
          Length = 2212

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 223  PLLQYSSPYILPSTDPQLEKSIRRLLCTYLLNQVARRHYDNCI 351
            P+  YSS +IL +T+P       R LC Y+LN    R+++ CI
Sbjct: 1168 PMPPYSSMFILSTTNP------LRRLCHYILN---LRYFEMCI 1201


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,182,155
Number of Sequences: 219361
Number of extensions: 1232466
Number of successful extensions: 2738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2738
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)