ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15o12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor 29 3.0
2FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor 29 3.9

>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor|
          Length = 4010

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
 Frame = -2

Query: 172 GFGIMRASLCCVLCLXQAXTC-----CVDCLPP 89
           G G  +A   C+ C  Q  TC     C  CLPP
Sbjct: 454 GLGFYQAGSLCLACQPQCSTCTNGLECSSCLPP 486



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>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor|
          Length = 4007

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
 Frame = -2

Query: 190 WAHGXSGFGIMRASLCCVLCLXQAXTC-----CVDCLPP 89
           W     G G  +A   C+ C  Q  TC     C  C PP
Sbjct: 449 WCVHSCGLGFYQAGSLCLACQPQCSTCTSGLECSSCQPP 487


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,291,447
Number of Sequences: 219361
Number of extensions: 238762
Number of successful extensions: 459
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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